Wall clock time and date at job start Tue Mar 31 2020 03:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21277 * 120.00110 * 2 1 4 4 N 1.34774 * 119.99539 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00124 * 5.24891 * 4 2 1 6 6 C 1.46504 * 119.99877 * 185.24294 * 4 2 1 7 7 C 1.50696 * 109.47624 * 270.00201 * 6 4 2 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 4 9 9 N 1.34768 * 120.00196 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00292 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.01098 * 326.38788 * 10 9 7 12 12 C 1.54259 * 110.07327 * 87.80674 * 10 9 7 13 13 C 1.54894 * 104.19184 * 142.92010 * 12 10 9 14 14 C 1.54890 * 102.74801 * 322.05653 * 13 12 10 15 15 H 1.09005 * 110.59551 * 279.20567 * 14 13 12 16 16 C 1.53006 * 110.48476 * 156.62442 * 14 13 12 17 17 N 1.46503 * 109.47097 * 70.22148 * 16 14 13 18 18 C 1.36929 * 119.99558 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00417 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99985 * 179.72546 * 18 17 16 21 21 N 1.31617 * 119.99487 * 0.27629 * 20 18 17 22 22 Si 1.86795 * 120.00290 * 180.27461 * 20 18 17 23 23 H 1.48501 * 109.46908 * 90.00195 * 22 20 18 24 24 H 1.48499 * 109.47319 * 209.99825 * 22 20 18 25 25 H 1.48500 * 109.47458 * 330.00466 * 22 20 18 26 26 C 1.53870 * 110.03103 * 205.00309 * 10 9 7 27 27 H 1.08996 * 109.46826 * 264.66036 * 1 2 3 28 28 H 1.08998 * 109.46616 * 24.65796 * 1 2 3 29 29 H 1.08994 * 109.47313 * 144.65782 * 1 2 3 30 30 H 1.09001 * 109.47370 * 274.55285 * 5 4 2 31 31 H 1.08995 * 109.47248 * 34.55681 * 5 4 2 32 32 H 1.09003 * 109.47220 * 154.55796 * 5 4 2 33 33 H 1.09002 * 109.46758 * 149.99755 * 6 4 2 34 34 H 1.09003 * 109.46449 * 30.00684 * 6 4 2 35 35 H 0.97006 * 119.99989 * 359.97438 * 9 7 6 36 36 H 1.08999 * 110.48839 * 261.59433 * 12 10 9 37 37 H 1.09003 * 110.48858 * 24.24135 * 12 10 9 38 38 H 1.08998 * 110.75199 * 203.74110 * 13 12 10 39 39 H 1.08996 * 110.75507 * 80.37214 * 13 12 10 40 40 H 1.09009 * 109.46571 * 310.22479 * 16 14 13 41 41 H 1.08993 * 109.46923 * 190.22683 * 16 14 13 42 42 H 0.97001 * 120.00250 * 0.02562 * 17 16 14 43 43 H 0.97005 * 119.99516 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.03447 * 121.37874 * 26 10 9 45 45 H 1.09001 * 110.03875 * 359.94556 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4529 -2.4332 -0.1172 6 6 3.6413 -1.1700 0.1154 7 6 4.2546 -1.1054 -1.2596 8 8 3.5419 -1.0618 -2.2399 9 7 5.5949 -1.0960 -1.3999 10 6 6.1912 -1.0326 -2.7366 11 1 5.5651 -1.5684 -3.4500 12 6 6.3530 0.4375 -3.1750 13 6 7.6923 0.4566 -3.9527 14 6 8.5747 -0.5216 -3.1380 15 1 8.9902 -0.0240 -2.2617 16 6 9.6955 -1.0870 -4.0128 17 7 10.6675 -0.0304 -4.3045 18 6 11.7652 -0.3041 -5.0760 19 1 11.9142 -1.2987 -5.4698 20 6 12.6833 0.6984 -5.3571 21 7 12.5015 1.9105 -4.8776 22 14 14.1767 0.3271 -6.4159 23 1 13.8455 0.5730 -7.8425 24 1 15.3022 1.2068 -6.0103 25 1 14.5696 -1.0938 -6.2369 26 6 7.6037 -1.6424 -2.7130 27 1 -0.3633 -0.0956 1.0232 28 1 -0.3632 0.9340 -0.4287 29 1 -0.3633 -0.8382 -0.5944 30 1 1.1207 -2.7536 0.8703 31 1 0.5872 -2.2962 -0.7650 32 1 2.1093 -3.1919 -0.5435 33 1 3.9643 -2.0835 0.6148 34 1 3.9611 -0.3054 0.6970 35 1 6.1649 -1.1305 -0.6157 36 1 5.5301 0.7345 -3.8251 37 1 6.4078 1.0913 -2.3045 38 1 8.1243 1.4574 -3.9534 39 1 7.5528 0.0942 -4.9712 40 1 9.2743 -1.4610 -4.9461 41 1 10.1916 -1.9019 -3.4858 42 1 10.5339 0.8627 -3.9505 43 1 13.1433 2.6110 -5.0738 44 1 7.6632 -2.4740 -3.4152 45 1 7.8461 -1.9847 -1.7069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676909095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:39 Heat of formation + Delta-G solvation = -66.038393 kcal Electronic energy + Delta-G solvation = -23890.347276 eV Core-core repulsion = 20328.852897 eV Total energy + Delta-G solvation = -3561.494379 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58846 -39.46483 -37.91808 -35.74303 -34.77840 -33.39226 -31.35016 -30.82512 -28.75671 -28.71079 -27.45937 -26.13868 -24.28994 -22.14307 -21.34957 -20.30823 -19.70814 -19.48167 -17.60902 -17.36749 -17.01131 -16.78613 -15.97813 -15.60976 -15.11670 -14.85727 -14.40807 -14.12053 -13.83413 -13.67726 -13.46032 -13.34657 -13.14845 -13.01637 -12.80649 -12.74262 -12.41660 -12.18028 -12.14850 -11.70679 -11.28167 -11.05483 -10.83425 -10.67521 -10.53914 -10.28428 -10.24908 -10.19214 -10.13887 -9.92447 -9.64506 -9.08479 -9.01471 -8.83350 -6.87615 -5.73241 -3.01331 2.24072 2.50209 2.53666 3.20788 3.45567 3.50405 3.52232 4.23979 4.53100 4.60275 4.62320 4.69400 4.79286 4.83517 4.87349 4.91651 5.01286 5.07985 5.12966 5.25489 5.51765 5.56475 5.57591 5.65480 5.68162 5.70059 5.91648 5.92398 5.93568 6.14587 6.19415 6.29344 6.36017 6.55815 6.59641 6.65082 6.83657 6.94518 6.97201 7.38459 7.72745 7.82881 8.11561 8.46045 9.56981 10.16309 10.50934 11.49782 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.045864 B = 0.002277 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.350127 B =12293.573450 C =12585.492251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.540 6.540 4 N -0.603 5.603 5 C 0.082 3.918 6 C 0.095 3.905 7 C 0.496 3.504 8 O -0.533 6.533 9 N -0.722 5.722 10 C 0.142 3.858 11 H 0.088 0.912 12 C -0.133 4.133 13 C -0.111 4.111 14 C -0.097 4.097 15 H 0.075 0.925 16 C 0.160 3.840 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.121 4.121 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.016 0.984 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.362 -10.381 14.083 29.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.337 5.337 5 C -0.060 4.060 6 C -0.032 4.032 7 C 0.280 3.720 8 O -0.409 6.409 9 N -0.374 5.374 10 C 0.038 3.962 11 H 0.106 0.894 12 C -0.172 4.172 13 C -0.149 4.149 14 C -0.116 4.116 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.160 4.160 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.234 0.766 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.462 -9.891 13.271 29.536 hybrid contribution 1.174 0.016 -0.161 1.185 sum -23.289 -9.875 13.110 28.491 Atomic orbital electron populations 1.21948 0.91380 1.05308 1.04503 1.20847 0.90807 0.82868 0.75010 1.90741 1.70699 1.31089 1.49056 1.47457 1.05434 1.07212 1.73588 1.21842 0.97631 0.85037 1.01526 1.21328 0.81334 1.05440 0.95099 1.21140 0.82662 0.76194 0.92001 1.90696 1.61022 1.48797 1.40365 1.46245 1.06399 1.75123 1.09635 1.21705 0.94134 0.97006 0.83386 0.89403 1.22783 0.98459 0.95560 1.00388 1.22468 0.93369 1.00341 0.98678 1.22153 0.95186 0.95317 0.98925 0.90653 1.20698 0.89050 0.91900 0.95097 1.42353 1.24284 1.09235 1.61723 1.19238 0.99061 0.95501 1.23114 0.91263 1.24745 0.99364 0.95709 1.01356 1.69663 1.37625 1.01379 1.49606 0.86187 0.82643 0.77154 0.80198 1.21762 1.21811 1.20814 1.22426 0.92788 0.98909 1.01875 0.88834 0.88912 0.89699 0.92215 0.90667 0.90819 0.87454 0.86967 0.76609 0.91650 0.91460 0.90901 0.91235 0.96299 0.96578 0.78258 0.93559 0.90583 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 9.69 36.01 0.35 -0.70 16 2 C 0.52 5.47 7.76 -10.98 -0.09 5.38 16 3 O -0.54 -8.25 16.73 5.56 0.09 -8.15 16 4 N -0.60 -5.16 2.36 -182.95 -0.43 -5.59 16 5 C 0.08 0.40 10.11 59.85 0.60 1.00 16 6 C 0.09 0.78 5.83 -5.19 -0.03 0.75 16 7 C 0.50 5.80 7.89 -10.99 -0.09 5.71 16 8 O -0.53 -8.47 16.09 5.56 0.09 -8.38 16 9 N -0.72 -7.47 5.04 -52.73 -0.27 -7.73 16 10 C 0.14 1.78 3.24 -66.82 -0.22 1.56 16 11 H 0.09 1.22 7.56 -51.93 -0.39 0.82 16 12 C -0.13 -1.89 6.53 -25.07 -0.16 -2.06 16 13 C -0.11 -1.77 6.19 -24.74 -0.15 -1.93 16 14 C -0.10 -1.54 2.89 -88.96 -0.26 -1.79 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 16 C 0.16 3.22 5.54 -4.04 -0.02 3.20 16 17 N -0.73 -18.76 5.49 -59.90 -0.33 -19.09 16 18 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 22 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.12 -1.49 6.14 -25.62 -0.16 -1.65 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.35 6.09 -51.93 -0.32 0.04 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.31 6.16 -51.93 -0.32 -0.01 16 32 H 0.07 0.35 8.04 -51.93 -0.42 -0.06 16 33 H 0.11 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.11 0.95 7.50 -51.93 -0.39 0.56 16 35 H 0.40 3.00 8.32 -40.82 -0.34 2.66 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.16 7.97 -51.93 -0.41 0.74 16 40 H 0.02 0.39 8.02 -51.92 -0.42 -0.03 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.38 10.33 7.64 -40.82 -0.31 10.01 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 45 H 0.07 0.71 7.62 -51.93 -0.40 0.31 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -37.48 368.95 -7.51 -44.99 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.46 Total: 6.63 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.47 Total: 2.00 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.30 Total: -60.34 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.53 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.48 -7.51 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676909095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.044 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds