Wall clock time and date at job start Tue Mar 31 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 120.00256 * 2 1 4 4 N 1.34777 * 120.00162 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.64383 * 359.96655 * 4 2 1 6 6 C 1.54909 * 104.82778 * 204.16048 * 5 4 2 7 7 C 1.55155 * 101.58261 * 322.99051 * 6 5 4 8 8 C 1.47019 * 125.65284 * 180.02562 * 4 2 1 9 9 H 1.09008 * 109.88109 * 298.48242 * 8 4 2 10 10 C 1.50698 * 109.88217 * 59.48955 * 8 4 2 11 11 O 1.21281 * 120.00113 * 18.54863 * 10 8 4 12 12 N 1.34777 * 120.00090 * 198.55152 * 10 8 4 13 13 C 1.46495 * 120.00154 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47293 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47090 * 179.97438 * 15 14 13 17 17 C 1.46502 * 120.00416 * 269.72181 * 16 15 14 18 18 C 1.36936 * 120.00038 * 90.00249 * 16 15 14 19 19 H 1.08003 * 119.99658 * 342.17227 * 18 16 15 20 20 C 1.38809 * 120.00286 * 162.17086 * 18 16 15 21 21 N 1.31621 * 120.00227 * 344.98982 * 20 18 16 22 22 Si 1.86802 * 120.00130 * 164.99430 * 20 18 16 23 23 H 1.48502 * 109.47123 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47253 * 119.99665 * 22 20 18 25 25 H 1.48493 * 109.47038 * 239.99824 * 22 20 18 26 26 H 1.08998 * 109.47063 * 270.00168 * 1 2 3 27 27 H 1.09004 * 109.46651 * 30.00461 * 1 2 3 28 28 H 1.09000 * 109.46739 * 150.00616 * 1 2 3 29 29 H 1.08997 * 110.36840 * 322.99224 * 5 4 2 30 30 H 1.08992 * 110.37049 * 85.21408 * 5 4 2 31 31 H 1.09005 * 111.00888 * 81.06313 * 6 5 4 32 32 H 1.09005 * 111.00633 * 204.87673 * 6 5 4 33 33 H 1.09006 * 110.71751 * 277.13658 * 7 6 5 34 34 H 1.09006 * 110.72347 * 153.86988 * 7 6 5 35 35 H 0.97001 * 119.99657 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.47380 * 60.00080 * 13 12 10 37 37 H 1.08998 * 109.47231 * 299.99987 * 13 12 10 38 38 H 1.08992 * 109.47318 * 60.00009 * 14 13 12 39 39 H 1.09000 * 109.46714 * 299.99790 * 14 13 12 40 40 H 1.09001 * 109.46989 * 59.99545 * 15 14 13 41 41 H 1.08998 * 109.47079 * 300.00025 * 15 14 13 42 42 H 1.08995 * 109.47046 * 265.24378 * 17 16 15 43 43 H 1.08998 * 109.46435 * 25.24013 * 17 16 15 44 44 H 1.08990 * 109.47241 * 145.23527 * 17 16 15 45 45 H 0.96989 * 120.00338 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.5730 -2.5103 0.0018 6 6 2.6546 -3.4344 0.6149 7 6 3.9549 -2.8232 0.0294 8 6 3.6440 -1.3120 0.0011 9 1 4.0614 -0.8622 -0.8999 10 6 4.2244 -0.6462 1.2221 11 8 3.5145 -0.4013 2.1745 12 7 5.5324 -0.3228 1.2558 13 6 6.0965 0.3250 2.4425 14 6 7.5888 0.5813 2.2229 15 6 8.1781 1.2573 3.4625 16 7 9.6070 1.5021 3.2524 17 6 10.5896 0.4893 3.6462 18 6 10.0249 2.6802 2.6932 19 1 9.3253 3.2979 2.1496 20 6 11.3474 3.0805 2.8250 21 7 12.1243 2.5025 3.7164 22 14 12.0247 4.4398 1.7373 23 1 10.9571 4.9215 0.8244 24 1 12.4959 5.5640 2.5854 25 1 13.1596 3.9140 0.9369 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8901 -0.5137 29 1 0.6735 -2.5189 0.6173 30 1 1.3384 -2.8215 -1.0160 31 1 2.6497 -3.3732 1.7032 32 1 2.5224 -4.4643 0.2830 33 1 4.1381 -3.1985 -0.9775 34 1 4.8051 -3.0298 0.6796 35 1 6.1000 -0.5183 0.4939 36 1 5.9632 -0.3236 3.3084 37 1 5.5864 1.2724 2.6164 38 1 7.7225 1.2297 1.3570 39 1 8.0985 -0.3664 2.0493 40 1 8.0444 0.6085 4.3282 41 1 7.6684 2.2049 3.6365 42 1 10.9603 0.7123 4.6465 43 1 10.1186 -0.4937 3.6440 44 1 11.4205 0.4956 2.9408 45 1 13.0483 2.7824 3.8088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689892115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:12 Heat of formation + Delta-G solvation = -48.504649 kcal Electronic energy + Delta-G solvation = -24239.024280 eV Core-core repulsion = 20678.290221 eV Total energy + Delta-G solvation = -3560.734059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85746 -38.87876 -37.38107 -36.17769 -34.69097 -32.50768 -31.93690 -30.60513 -29.80929 -28.87610 -25.96184 -25.40590 -24.00282 -22.40630 -21.75980 -20.82692 -20.22814 -19.24343 -17.61460 -17.31312 -16.70396 -16.20596 -15.51685 -15.37491 -15.25604 -14.77203 -14.66627 -14.11265 -13.77525 -13.70257 -13.27935 -13.25976 -13.04870 -12.89406 -12.75121 -12.62574 -12.30670 -11.82355 -11.68637 -11.58387 -11.43347 -11.37503 -10.98673 -10.77212 -10.75811 -10.43610 -10.14343 -10.06227 -9.93466 -9.80574 -9.77425 -8.90856 -8.88813 -8.50011 -6.77084 -5.69116 -3.10842 2.38131 2.58094 2.77018 3.32731 3.40594 3.47781 3.50268 4.02898 4.09718 4.47354 4.53486 4.56156 4.69196 4.81194 4.92665 5.01618 5.13206 5.15760 5.26029 5.29398 5.37723 5.45161 5.47020 5.50758 5.52783 5.70920 5.84648 5.89403 5.95561 6.14770 6.23562 6.44538 6.62921 6.77150 6.80321 6.96704 7.21892 7.45020 7.58837 7.74541 7.85691 7.98379 8.30599 8.41312 9.27561 9.91877 10.38651 11.36514 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002703 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.739496 B =10357.710598 C =10893.709078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.530 3.470 3 O -0.533 6.533 4 N -0.605 5.605 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.121 4.121 8 C 0.117 3.883 9 H 0.097 0.903 10 C 0.508 3.492 11 O -0.531 6.531 12 N -0.724 5.724 13 C 0.122 3.878 14 C -0.149 4.149 15 C 0.156 3.844 16 N -0.605 5.605 17 C 0.164 3.836 18 C -0.251 4.251 19 H 0.071 0.929 20 C -0.003 4.003 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.027 0.973 43 H -0.004 1.004 44 H 0.046 0.954 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.969 -15.778 -9.916 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.320 3.680 3 O -0.409 6.409 4 N -0.340 5.340 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.159 4.159 8 C 0.009 3.991 9 H 0.115 0.885 10 C 0.292 3.708 11 O -0.407 6.407 12 N -0.376 5.376 13 C -0.001 4.001 14 C -0.190 4.190 15 C 0.027 3.973 16 N -0.328 5.328 17 C 0.020 3.980 18 C -0.380 4.380 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.557 5.557 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.217 1.217 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.014 0.986 44 H 0.065 0.935 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.028 -14.881 -9.160 28.117 hybrid contribution 0.823 0.631 -0.915 1.383 sum -21.205 -14.250 -10.075 27.463 Atomic orbital electron populations 1.21860 0.91141 1.04625 1.04892 1.20504 0.90382 0.81940 0.75199 1.90765 1.70552 1.30592 1.48964 1.48317 1.05097 1.06340 1.74296 1.22358 0.97189 0.81591 1.00955 1.22810 0.93598 0.99018 1.01692 1.22628 0.99239 0.90983 1.03087 1.21521 0.82828 0.97379 0.97397 0.88544 1.20674 0.82298 0.78846 0.89011 1.90673 1.59405 1.53512 1.37128 1.46075 1.09449 1.61894 1.20186 1.21432 0.94647 0.97270 0.86775 1.22519 0.91734 1.01685 1.03072 1.20581 0.85961 0.97706 0.93009 1.43971 0.99621 1.16737 1.72468 1.20800 0.91193 0.86321 0.99717 1.19288 0.94405 0.98079 1.26266 0.91139 1.24926 0.97740 0.98949 0.98468 1.70120 1.06888 1.44554 1.34095 0.86189 0.78841 0.81436 0.80148 1.20348 1.21800 1.21679 0.88688 0.88840 0.90294 0.90196 0.90881 0.90039 0.89240 0.89183 0.89287 0.76727 0.91949 0.91728 0.91497 0.92234 0.94414 0.93346 0.95502 0.98591 0.93479 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.67 36.01 0.35 -0.91 16 2 C 0.53 6.71 7.30 -10.98 -0.08 6.63 16 3 O -0.53 -9.49 16.72 5.56 0.09 -9.39 16 4 N -0.60 -6.28 2.79 -164.33 -0.46 -6.74 16 5 C 0.10 0.61 6.27 -2.53 -0.02 0.59 16 6 C -0.13 -0.76 7.08 -24.58 -0.17 -0.93 16 7 C -0.12 -0.79 6.48 -24.90 -0.16 -0.95 16 8 C 0.12 1.22 3.29 -68.11 -0.22 0.99 16 9 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 10 C 0.51 7.37 6.18 -10.99 -0.07 7.30 16 11 O -0.53 -9.85 15.97 5.56 0.09 -9.76 16 12 N -0.72 -9.83 5.56 -60.30 -0.33 -10.17 16 13 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 14 C -0.15 -2.57 5.65 -26.73 -0.15 -2.72 16 15 C 0.16 3.24 5.65 -4.04 -0.02 3.22 16 16 N -0.61 -15.53 2.93 -181.13 -0.53 -16.06 16 17 C 0.16 4.12 8.97 59.85 0.54 4.66 16 18 C -0.25 -7.04 9.70 -15.06 -0.15 -7.19 16 19 H 0.07 1.94 7.87 -52.48 -0.41 1.53 16 20 C 0.00 -0.10 5.08 -17.43 -0.09 -0.19 16 21 N -0.91 -27.07 10.51 55.49 0.58 -26.49 16 22 Si 0.90 22.28 29.58 -169.99 -5.03 17.25 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.36 7.18 -51.93 -0.37 -0.01 16 29 H 0.08 0.39 7.55 -51.93 -0.39 0.00 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.61 7.82 -51.93 -0.41 0.20 16 35 H 0.40 4.37 8.47 -40.82 -0.35 4.02 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.03 0.73 7.48 -51.93 -0.39 0.34 16 43 H 0.00 -0.10 8.04 -51.93 -0.42 -0.51 16 44 H 0.05 1.27 7.01 -51.93 -0.36 0.90 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -37.47 367.78 -8.04 -45.51 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.72 Total: -2.09 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -0.27 Total: 12.40 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.74 Total: -59.46 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.18 Total: -19.15 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.47 -8.04 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689892115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.999 kcal (2) G-P(sol) polarization free energy of solvation -37.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds