Wall clock time and date at job start Tue Mar 31 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 120.00256 * 2 1 4 4 N 1.34777 * 120.00162 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.64383 * 359.96655 * 4 2 1 6 6 C 1.54909 * 104.82778 * 204.16048 * 5 4 2 7 7 C 1.55155 * 101.58261 * 322.99051 * 6 5 4 8 8 C 1.47019 * 125.65284 * 180.02562 * 4 2 1 9 9 H 1.09008 * 109.88109 * 298.48242 * 8 4 2 10 10 C 1.50698 * 109.88217 * 59.48955 * 8 4 2 11 11 O 1.21281 * 120.00113 * 18.54863 * 10 8 4 12 12 N 1.34777 * 120.00090 * 198.55152 * 10 8 4 13 13 C 1.46495 * 120.00154 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47293 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47090 * 179.97438 * 15 14 13 17 17 C 1.46502 * 120.00416 * 269.72181 * 16 15 14 18 18 C 1.36936 * 120.00038 * 90.00249 * 16 15 14 19 19 H 1.08003 * 119.99658 * 342.17227 * 18 16 15 20 20 C 1.38809 * 120.00286 * 162.17086 * 18 16 15 21 21 N 1.31621 * 120.00227 * 344.98982 * 20 18 16 22 22 Si 1.86802 * 120.00130 * 164.99430 * 20 18 16 23 23 H 1.48502 * 109.47123 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47253 * 119.99665 * 22 20 18 25 25 H 1.48493 * 109.47038 * 239.99824 * 22 20 18 26 26 H 1.08998 * 109.47063 * 270.00168 * 1 2 3 27 27 H 1.09004 * 109.46651 * 30.00461 * 1 2 3 28 28 H 1.09000 * 109.46739 * 150.00616 * 1 2 3 29 29 H 1.08997 * 110.36840 * 322.99224 * 5 4 2 30 30 H 1.08992 * 110.37049 * 85.21408 * 5 4 2 31 31 H 1.09005 * 111.00888 * 81.06313 * 6 5 4 32 32 H 1.09005 * 111.00633 * 204.87673 * 6 5 4 33 33 H 1.09006 * 110.71751 * 277.13658 * 7 6 5 34 34 H 1.09006 * 110.72347 * 153.86988 * 7 6 5 35 35 H 0.97001 * 119.99657 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.47380 * 60.00080 * 13 12 10 37 37 H 1.08998 * 109.47231 * 299.99987 * 13 12 10 38 38 H 1.08992 * 109.47318 * 60.00009 * 14 13 12 39 39 H 1.09000 * 109.46714 * 299.99790 * 14 13 12 40 40 H 1.09001 * 109.46989 * 59.99545 * 15 14 13 41 41 H 1.08998 * 109.47079 * 300.00025 * 15 14 13 42 42 H 1.08995 * 109.47046 * 265.24378 * 17 16 15 43 43 H 1.08998 * 109.46435 * 25.24013 * 17 16 15 44 44 H 1.08990 * 109.47241 * 145.23527 * 17 16 15 45 45 H 0.96989 * 120.00338 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.5730 -2.5103 0.0018 6 6 2.6546 -3.4344 0.6149 7 6 3.9549 -2.8232 0.0294 8 6 3.6440 -1.3120 0.0011 9 1 4.0614 -0.8622 -0.8999 10 6 4.2244 -0.6462 1.2221 11 8 3.5145 -0.4013 2.1745 12 7 5.5324 -0.3228 1.2558 13 6 6.0965 0.3250 2.4425 14 6 7.5888 0.5813 2.2229 15 6 8.1781 1.2573 3.4625 16 7 9.6070 1.5021 3.2524 17 6 10.5896 0.4893 3.6462 18 6 10.0249 2.6802 2.6932 19 1 9.3253 3.2979 2.1496 20 6 11.3474 3.0805 2.8250 21 7 12.1243 2.5025 3.7164 22 14 12.0247 4.4398 1.7373 23 1 10.9571 4.9215 0.8244 24 1 12.4959 5.5640 2.5854 25 1 13.1596 3.9140 0.9369 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8901 -0.5137 29 1 0.6735 -2.5189 0.6173 30 1 1.3384 -2.8215 -1.0160 31 1 2.6497 -3.3732 1.7032 32 1 2.5224 -4.4643 0.2830 33 1 4.1381 -3.1985 -0.9775 34 1 4.8051 -3.0298 0.6796 35 1 6.1000 -0.5183 0.4939 36 1 5.9632 -0.3236 3.3084 37 1 5.5864 1.2724 2.6164 38 1 7.7225 1.2297 1.3570 39 1 8.0985 -0.3664 2.0493 40 1 8.0444 0.6085 4.3282 41 1 7.6684 2.2049 3.6365 42 1 10.9603 0.7123 4.6465 43 1 10.1186 -0.4937 3.6440 44 1 11.4205 0.4956 2.9408 45 1 13.0483 2.7824 3.8088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689892115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:12 Heat of formation + Delta-G solvation = -75.743620 kcal Electronic energy + Delta-G solvation = -24240.205451 eV Core-core repulsion = 20678.290221 eV Total energy + Delta-G solvation = -3561.915229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75451 -39.97592 -38.29644 -37.87860 -36.19444 -33.89461 -33.10899 -31.89745 -30.85178 -29.65693 -27.98180 -26.98587 -24.88054 -23.70614 -22.75688 -22.17878 -21.48971 -20.18045 -18.77642 -18.55715 -18.12623 -17.30526 -16.93111 -16.61256 -16.31653 -16.15527 -15.75633 -15.41965 -15.13025 -14.74495 -14.61620 -14.53784 -14.33110 -13.86539 -13.70488 -13.40690 -13.31600 -13.06527 -13.05827 -12.84118 -12.67746 -12.52480 -12.33845 -12.29651 -12.13100 -12.07036 -12.00528 -11.84675 -11.53943 -11.04280 -10.98375 -10.64146 -10.14341 -9.74253 -8.85618 -7.84654 -5.28871 1.44158 1.45192 1.46108 1.56907 1.60765 1.93248 2.27996 2.50756 3.28405 3.42992 3.56829 3.61945 3.72569 3.88079 4.03784 4.06900 4.24332 4.27292 4.41945 4.43918 4.49963 4.58856 4.59887 4.71302 4.75326 4.82837 4.84472 4.87984 4.91276 4.96593 5.06363 5.21550 5.24255 5.25904 5.31503 5.41038 5.47819 5.59615 5.72301 6.29653 6.41655 6.53746 7.09941 7.13823 7.21231 7.86527 8.27791 9.19459 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025248 B = 0.002703 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.739496 B =10357.710598 C =10893.709078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.514 3.486 3 O -0.601 6.601 4 N -0.607 5.607 5 C 0.095 3.905 6 C -0.130 4.130 7 C -0.113 4.113 8 C 0.111 3.889 9 H 0.102 0.898 10 C 0.501 3.499 11 O -0.578 6.578 12 N -0.718 5.718 13 C 0.135 3.865 14 C -0.125 4.125 15 C 0.151 3.849 16 N -0.622 5.622 17 C 0.178 3.822 18 C -0.260 4.260 19 H 0.070 0.930 20 C -0.058 4.058 21 N -0.941 5.941 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.288 1.288 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.000 1.000 43 H 0.033 0.967 44 H 0.022 0.978 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 -18.006 -11.870 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.305 3.695 3 O -0.482 6.482 4 N -0.340 5.340 5 C -0.026 4.026 6 C -0.168 4.168 7 C -0.151 4.151 8 C 0.003 3.997 9 H 0.120 0.880 10 C 0.287 3.713 11 O -0.457 6.457 12 N -0.370 5.370 13 C 0.010 3.990 14 C -0.166 4.166 15 C 0.024 3.976 16 N -0.346 5.346 17 C 0.033 3.967 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.253 4.253 21 N -0.589 5.589 22 Si 0.797 3.203 23 H -0.193 1.193 24 H -0.220 1.220 25 H -0.215 1.215 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.134 0.866 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.604 -17.181 -11.148 31.251 hybrid contribution 1.240 1.271 -0.262 1.794 sum -22.365 -15.910 -11.410 29.724 Atomic orbital electron populations 1.21882 0.87518 1.06526 1.05715 1.21463 0.92338 0.81619 0.74048 1.90720 1.72159 1.33046 1.52273 1.48562 1.05305 1.07568 1.72602 1.22739 0.97482 0.79130 1.03267 1.22846 0.92875 1.00779 1.00258 1.22717 0.99554 0.87758 1.05070 1.21737 0.83133 0.99762 0.95053 0.87989 1.21530 0.81929 0.78037 0.89789 1.90642 1.60412 1.55478 1.39202 1.45967 1.09779 1.61308 1.19981 1.21110 0.93365 0.96575 0.87909 1.22143 0.92434 1.01471 1.00508 1.20750 0.83649 0.97991 0.95198 1.44223 1.01469 1.16335 1.72566 1.20563 0.90842 0.87971 0.97352 1.19580 0.94646 0.98814 1.25985 0.91188 1.25707 0.98129 1.01576 0.99845 1.70277 1.06884 1.46166 1.35549 0.85172 0.78138 0.78564 0.78389 1.19316 1.22031 1.21472 0.88180 0.88788 0.86588 0.88965 0.87556 0.92430 0.85785 0.85881 0.89640 0.75042 0.91702 0.93935 0.92597 0.90940 0.92959 0.94369 0.98211 0.94853 0.95925 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.67 71.24 0.69 -1.45 16 2 C 0.51 12.82 7.30 87.66 0.64 13.46 16 3 O -0.60 -22.22 16.72 -3.04 -0.05 -22.27 16 4 N -0.61 -11.64 2.79 -792.20 -2.21 -13.85 16 5 C 0.09 0.80 6.27 86.85 0.54 1.34 16 6 C -0.13 -1.04 7.08 31.99 0.23 -0.81 16 7 C -0.11 -1.12 6.48 31.78 0.21 -0.92 16 8 C 0.11 2.16 3.29 44.59 0.15 2.31 16 9 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 10 C 0.50 14.50 6.18 87.66 0.54 15.04 16 11 O -0.58 -21.95 15.97 -3.03 -0.05 -22.00 16 12 N -0.72 -19.14 5.56 -463.07 -2.57 -21.71 16 13 C 0.14 4.21 5.67 86.38 0.49 4.70 16 14 C -0.13 -4.20 5.65 30.60 0.17 -4.03 16 15 C 0.15 6.23 5.65 86.38 0.49 6.72 16 16 N -0.62 -31.96 2.93 -726.97 -2.13 -34.10 16 17 C 0.18 8.92 8.97 127.77 1.15 10.07 16 18 C -0.26 -14.68 9.70 84.03 0.82 -13.86 16 19 H 0.07 3.87 7.87 -2.91 -0.02 3.85 16 20 C -0.06 -3.34 5.08 84.86 0.43 -2.91 16 21 N -0.94 -56.86 10.51 21.65 0.23 -56.64 16 22 Si 0.97 46.18 29.58 68.60 2.03 48.21 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.12 0.66 7.18 -2.39 -0.02 0.64 16 29 H 0.09 0.58 7.55 -2.39 -0.02 0.56 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.08 0.95 7.82 -2.38 -0.02 0.93 16 35 H 0.41 8.53 8.47 -92.71 -0.79 7.75 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 41 H 0.04 1.64 8.04 -2.39 -0.02 1.62 16 42 H 0.00 -0.02 7.48 -2.39 -0.02 -0.04 16 43 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 44 H 0.02 1.21 7.01 -2.39 -0.02 1.19 16 45 H 0.25 14.48 8.31 -92.72 -0.77 13.71 16 Total: -1.00 -85.07 367.78 1.96 -83.11 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.18 Total: 9.58 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 6.54 Total: 29.66 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -6.69 Total: -126.30 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.10 Total: -44.27 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -85.07 1.96 -83.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689892115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.367 kcal (2) G-P(sol) polarization free energy of solvation -85.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds