Wall clock time and date at job start Tue Mar 31 2020 03:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00467 * 2 1 4 4 N 1.34783 * 119.99758 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99693 * 4.96057 * 4 2 1 6 6 C 1.46494 * 119.99994 * 184.95374 * 4 2 1 7 7 C 1.50702 * 109.47542 * 270.00325 * 6 4 2 8 8 O 1.21287 * 119.99750 * 0.02562 * 7 6 4 9 9 N 1.34768 * 120.00277 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99984 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47032 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49787 * 305.06053 * 11 10 9 13 13 C 1.53037 * 109.49496 * 185.00037 * 11 10 9 14 14 C 1.53049 * 109.53736 * 178.68428 * 13 11 10 15 15 C 1.53191 * 109.31061 * 61.36208 * 14 13 11 16 16 N 1.46925 * 108.77716 * 305.36566 * 15 14 13 17 17 C 1.36935 * 120.62874 * 233.60946 * 16 15 14 18 18 H 1.08003 * 119.99830 * 152.27604 * 17 16 15 19 19 C 1.38811 * 119.99959 * 332.27266 * 17 16 15 20 20 N 1.31614 * 120.00587 * 343.74544 * 19 17 16 21 21 Si 1.86809 * 119.99811 * 163.75115 * 19 17 16 22 22 H 1.48493 * 109.47147 * 59.99506 * 21 19 17 23 23 H 1.48496 * 109.46886 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46869 * 299.99709 * 21 19 17 25 25 C 1.46923 * 118.73690 * 53.61125 * 16 15 14 26 26 H 1.09005 * 109.46870 * 264.53235 * 1 2 3 27 27 H 1.08998 * 109.46703 * 24.52784 * 1 2 3 28 28 H 1.08993 * 109.47379 * 144.53096 * 1 2 3 29 29 H 1.09006 * 109.46931 * 274.61658 * 5 4 2 30 30 H 1.08991 * 109.47336 * 34.62207 * 5 4 2 31 31 H 1.09001 * 109.46875 * 154.62296 * 5 4 2 32 32 H 1.09002 * 109.47428 * 30.00331 * 6 4 2 33 33 H 1.09002 * 109.46965 * 150.00465 * 6 4 2 34 34 H 0.96994 * 120.00219 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.46850 * 300.00136 * 10 9 7 36 36 H 1.09002 * 109.47083 * 59.99989 * 10 9 7 37 37 H 1.08996 * 109.46257 * 298.70304 * 13 11 10 38 38 H 1.09002 * 109.46435 * 58.67812 * 13 11 10 39 39 H 1.08998 * 109.49540 * 181.31592 * 14 13 11 40 40 H 1.08996 * 109.49600 * 301.41214 * 14 13 11 41 41 H 1.08999 * 109.58323 * 65.15606 * 15 14 13 42 42 H 1.09005 * 109.58009 * 185.57685 * 15 14 13 43 43 H 0.96995 * 120.00626 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58355 * 186.60333 * 25 16 15 45 45 H 1.08997 * 109.58968 * 66.18089 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4524 -2.4336 -0.1086 6 6 3.6417 -1.1697 0.1101 7 6 4.2490 -1.1097 -1.2679 8 8 3.5320 -1.0685 -2.2453 9 7 5.5887 -1.1018 -1.4141 10 6 6.1790 -1.0430 -2.7537 11 6 7.7047 -1.0456 -2.6392 12 1 8.0221 -0.2314 -1.9876 13 6 8.3213 -0.8587 -4.0273 14 6 9.8470 -0.8283 -3.9098 15 6 10.3377 -2.1622 -3.3382 16 7 9.6399 -2.4191 -2.0711 17 6 10.3449 -2.6881 -0.9284 18 1 9.9254 -2.4412 0.0357 19 6 11.5987 -3.2783 -1.0093 20 7 11.9784 -3.8672 -2.1234 21 14 12.7472 -3.2369 0.4635 22 1 12.1024 -3.9202 1.6134 23 1 14.0150 -3.9306 0.1221 24 1 13.0374 -1.8261 0.8253 25 6 8.1712 -2.3819 -2.0533 26 1 -0.3633 -0.0979 1.0231 27 1 -0.3633 0.9349 -0.4266 28 1 -0.3634 -0.8369 -0.5963 29 1 1.1235 -2.7501 0.8813 30 1 0.5845 -2.2991 -0.7541 31 1 2.1073 -3.1940 -0.5341 32 1 3.9642 -0.3031 0.6873 33 1 3.9670 -2.0814 0.6111 34 1 6.1621 -1.1344 -0.6325 35 1 5.8561 -1.9091 -3.3314 36 1 5.8541 -0.1307 -3.2541 37 1 8.0232 -1.6859 -4.6715 38 1 7.9717 0.0802 -4.4567 39 1 10.2848 -0.6718 -4.8957 40 1 10.1446 -0.0166 -3.2461 41 1 10.1208 -2.9640 -4.0440 42 1 11.4118 -2.1102 -3.1599 43 1 12.8547 -4.2792 -2.1800 44 1 7.8158 -2.4749 -1.0271 45 1 7.7776 -3.2017 -2.6542 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690374515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:22 Heat of formation + Delta-G solvation = -54.754069 kcal Electronic energy + Delta-G solvation = -24480.291955 eV Core-core repulsion = 20919.286900 eV Total energy + Delta-G solvation = -3561.005054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39542 -39.11086 -37.75001 -35.66328 -34.74245 -33.02533 -31.21432 -30.46403 -30.23756 -28.25567 -26.51406 -25.33899 -24.82525 -22.14729 -21.14004 -20.63791 -19.53694 -19.01317 -17.39971 -17.25215 -16.74099 -16.52232 -15.53489 -15.29400 -15.22914 -14.82835 -14.28838 -13.86489 -13.65012 -13.52365 -13.42338 -13.29833 -13.01871 -12.81670 -12.72283 -12.38610 -12.34108 -12.20039 -12.17600 -11.82479 -11.30294 -11.01969 -10.72087 -10.51889 -10.26695 -10.19630 -10.14141 -10.06111 -9.92518 -9.61268 -9.44164 -8.91284 -8.88653 -8.48707 -6.70027 -5.81079 -3.24598 2.35874 2.66046 2.68828 3.35493 3.41488 3.41959 3.42589 4.35494 4.45633 4.72482 4.79388 4.86168 4.99601 5.03149 5.11299 5.13670 5.26776 5.29613 5.37707 5.43866 5.46408 5.60372 5.61266 5.83001 5.95082 5.98907 6.06898 6.23118 6.32681 6.37475 6.51685 6.57977 6.69899 6.76517 6.85581 6.94924 7.07172 7.39387 7.58100 7.66478 7.75655 7.93593 8.28673 8.42154 9.18348 9.81840 10.38531 11.26972 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021542 B = 0.003068 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.498805 B = 9123.314327 C = 9875.995570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.516 3.484 3 O -0.543 6.543 4 N -0.602 5.602 5 C 0.082 3.918 6 C 0.094 3.906 7 C 0.496 3.504 8 O -0.540 6.540 9 N -0.722 5.722 10 C 0.129 3.871 11 C -0.118 4.118 12 H 0.073 0.927 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.168 3.832 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.155 3.845 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.403 0.597 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.255 0.745 44 H 0.050 0.950 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.203 3.361 3.679 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.305 3.695 3 O -0.419 6.419 4 N -0.335 5.335 5 C -0.061 4.061 6 C -0.033 4.033 7 C 0.280 3.720 8 O -0.416 6.416 9 N -0.374 5.374 10 C 0.005 3.995 11 C -0.139 4.139 12 H 0.092 0.908 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.028 3.972 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -19.239 3.834 2.944 19.837 hybrid contribution 0.996 -0.196 0.984 1.413 sum -18.243 3.638 3.928 19.013 Atomic orbital electron populations 1.21944 0.91481 1.05217 1.04481 1.20823 0.90762 0.82898 0.75045 1.90725 1.70732 1.31139 1.49342 1.47457 1.05519 1.07158 1.73394 1.21853 0.97613 0.85102 1.01537 1.21340 0.81115 1.05648 0.95169 1.21087 0.82583 0.76390 0.91947 1.90677 1.60835 1.49390 1.40739 1.46051 1.06378 1.74735 1.10280 1.21442 0.93369 1.01564 0.83122 1.21960 0.91508 1.01692 0.98706 0.90840 1.21341 0.96796 1.00263 0.95379 1.22177 0.94427 1.01795 0.99709 1.20822 0.98683 0.90235 0.85995 1.44032 0.98984 1.81397 1.06986 1.19125 0.99605 1.33724 0.85947 0.91772 1.25042 0.99902 0.97537 0.97126 1.70011 1.20409 1.37761 1.26513 0.86367 0.80383 0.77709 0.82268 1.20898 1.21630 1.21020 1.20884 0.86287 0.92262 0.97728 0.88863 0.89003 0.89693 0.92191 0.90736 0.90668 0.86962 0.87218 0.76198 0.91695 0.92117 0.92521 0.93464 0.93189 0.92755 0.96489 0.89377 0.93543 0.93180 0.96419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.68 36.01 0.35 -0.87 16 2 C 0.52 6.12 7.77 -10.98 -0.09 6.03 16 3 O -0.54 -8.88 16.73 5.56 0.09 -8.79 16 4 N -0.60 -6.19 2.36 -182.96 -0.43 -6.62 16 5 C 0.08 0.54 10.11 59.85 0.61 1.14 16 6 C 0.09 0.98 5.83 -5.20 -0.03 0.95 16 7 C 0.50 6.96 7.90 -10.99 -0.09 6.88 16 8 O -0.54 -9.60 16.43 5.55 0.09 -9.51 16 9 N -0.72 -9.66 5.33 -60.29 -0.32 -9.98 16 10 C 0.13 1.93 5.07 -4.04 -0.02 1.91 16 11 C -0.12 -1.95 2.37 -90.50 -0.21 -2.16 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.10 -1.66 5.17 -26.69 -0.14 -1.80 16 14 C -0.14 -2.68 6.08 -26.61 -0.16 -2.85 16 15 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 16 N -0.59 -14.38 3.00 -172.32 -0.52 -14.90 16 17 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 18 H 0.06 1.65 7.88 -52.48 -0.41 1.24 16 19 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 20 N -0.90 -25.85 11.12 55.49 0.62 -25.24 16 21 Si 0.90 21.26 29.58 -169.99 -5.03 16.23 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.16 3.07 5.60 -3.71 -0.02 3.05 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.44 6.10 -51.93 -0.32 0.12 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.41 6.16 -51.93 -0.32 0.09 16 31 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.11 1.18 7.50 -51.93 -0.39 0.79 16 33 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.40 4.68 7.71 -40.82 -0.31 4.37 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.33 6.00 -51.93 -0.31 2.02 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -35.10 361.89 -7.58 -42.68 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.48 Total: 1.38 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.05 Total: 9.29 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.65 Total: -56.74 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.18 Total: -18.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.10 -7.58 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690374515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.078 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds