Wall clock time and date at job start Tue Mar 31 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47346 * 2 1 4 4 C 1.36939 * 120.00180 * 84.49293 * 3 2 1 5 5 H 1.07997 * 120.00388 * 218.13174 * 4 3 2 6 6 C 1.38808 * 119.99551 * 38.13494 * 4 3 2 7 7 N 1.31616 * 120.00737 * 21.28120 * 6 4 3 8 8 Si 1.86810 * 119.99854 * 201.28298 * 6 4 3 9 9 H 1.48492 * 109.47069 * 89.99694 * 8 6 4 10 10 H 1.48498 * 109.46939 * 209.99933 * 8 6 4 11 11 H 1.48501 * 109.46821 * 329.99928 * 8 6 4 12 12 C 1.46502 * 120.00166 * 264.50226 * 3 2 1 13 13 C 1.52999 * 109.47627 * 89.99170 * 12 3 2 14 14 N 1.46494 * 109.47184 * 179.97438 * 13 12 3 15 15 C 1.34778 * 119.99612 * 179.97438 * 14 13 12 16 16 O 1.21271 * 120.00337 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99634 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.47147 * 60.00788 * 17 15 14 19 19 C 1.53005 * 109.47330 * 300.00302 * 17 15 14 20 20 C 1.53003 * 109.46945 * 180.02562 * 17 15 14 21 21 H 1.08995 * 110.21361 * 60.47958 * 20 17 15 22 22 C 1.54479 * 110.24491 * 182.49893 * 20 17 15 23 23 C 1.54632 * 101.76441 * 144.41773 * 22 20 17 24 24 C 1.51285 * 104.19383 * 335.20092 * 23 22 20 25 25 O 1.21280 * 124.93780 * 196.23175 * 24 23 22 26 26 N 1.34419 * 110.11256 * 16.25143 * 24 23 22 27 27 H 1.09008 * 109.46562 * 60.00284 * 1 2 3 28 28 H 1.09000 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47760 * 300.00377 * 1 2 3 30 30 H 1.08998 * 109.47251 * 239.99531 * 2 1 3 31 31 H 1.08997 * 109.46987 * 119.99927 * 2 1 3 32 32 H 0.96999 * 120.00989 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47309 * 210.00005 * 12 3 2 34 34 H 1.09000 * 109.46947 * 329.99223 * 12 3 2 35 35 H 1.09001 * 109.47010 * 300.00963 * 13 12 3 36 36 H 1.09002 * 109.46520 * 60.00379 * 13 12 3 37 37 H 0.96996 * 120.00334 * 0.02562 * 14 13 12 38 38 H 1.08999 * 109.47024 * 179.97438 * 19 17 15 39 39 H 1.08990 * 109.47066 * 300.00078 * 19 17 15 40 40 H 1.09003 * 109.46526 * 60.00203 * 19 17 15 41 41 H 1.08996 * 110.97019 * 262.53612 * 22 20 17 42 42 H 1.09004 * 110.97031 * 26.29918 * 22 20 17 43 43 H 1.09003 * 110.48132 * 216.52474 * 23 22 20 44 44 H 1.08996 * 110.59584 * 93.93690 * 23 22 20 45 45 H 0.97008 * 124.34173 * 180.37873 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1393 2.0647 1.1804 5 1 1.8907 3.1147 1.2244 6 6 2.5815 1.4078 2.3205 7 7 3.2688 0.2906 2.2117 8 14 2.2010 2.1094 4.0095 9 1 0.9099 1.5593 4.4946 10 1 3.2840 1.7379 4.9552 11 1 2.1069 3.5888 3.9212 12 6 2.3771 2.0313 -1.2629 13 6 1.1484 2.7361 -1.8409 14 7 1.5074 3.3867 -3.1034 15 6 0.5769 4.0726 -3.7965 16 8 -0.5573 4.1516 -3.3747 17 6 0.9462 4.7414 -5.0955 18 1 1.3010 3.9913 -5.8024 19 6 2.0517 5.7687 -4.8441 20 6 -0.2827 5.4463 -5.6735 21 1 -0.6425 6.2056 -4.9792 22 6 0.0600 6.0857 -7.0374 23 6 -1.2598 5.8885 -7.8185 24 6 -1.9127 4.6990 -7.1495 25 8 -2.8186 4.0464 -7.6231 26 7 -1.3428 4.4709 -5.9536 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5775 -0.1686 3.0083 33 1 3.1651 2.7629 -1.0839 34 1 2.7317 1.2812 -1.9698 35 1 0.3604 2.0045 -2.0198 36 1 0.7939 3.4863 -1.1340 37 1 2.4145 3.3232 -3.4410 38 1 2.3191 6.2521 -5.7838 39 1 1.6969 6.5188 -4.1374 40 1 2.9272 5.2668 -4.4322 41 1 0.2919 7.1447 -6.9245 42 1 0.8819 5.5572 -7.5204 43 1 -1.0539 5.6712 -8.8666 44 1 -1.8933 6.7711 -7.7301 45 1 -1.5997 3.7540 -5.3528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691042690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:48 Heat of formation + Delta-G solvation = -92.059795 kcal Electronic energy + Delta-G solvation = -24430.684120 eV Core-core repulsion = 20868.061369 eV Total energy + Delta-G solvation = -3562.622752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74125 -40.43379 -38.22115 -37.66023 -35.80029 -34.24608 -33.40942 -32.11290 -31.57730 -29.22995 -27.60720 -26.32312 -25.12331 -23.46224 -22.26756 -22.17671 -21.39510 -20.91280 -18.70416 -18.38344 -18.05819 -17.32098 -17.06542 -16.61598 -16.53528 -15.97685 -15.55505 -15.47108 -15.07944 -14.85002 -14.51733 -14.34782 -13.98322 -13.92321 -13.86507 -13.59811 -13.22387 -13.16772 -12.99012 -12.83728 -12.76672 -12.45164 -12.38043 -12.29226 -12.08935 -12.00450 -11.85601 -11.62042 -11.49047 -10.93024 -10.79023 -10.54826 -10.12011 -10.02437 -8.62420 -7.84625 -5.51331 1.43757 1.47682 1.54514 1.57469 1.65061 2.18126 2.44254 2.51061 3.21036 3.37536 3.48722 3.68418 3.78926 3.90945 4.16332 4.23285 4.27730 4.29195 4.35861 4.41508 4.51989 4.66678 4.74634 4.84778 4.88402 4.89038 4.95965 5.04515 5.07792 5.12007 5.12956 5.23627 5.25965 5.39978 5.44317 5.51981 5.64961 5.82531 5.82926 6.11105 6.44596 6.60094 7.14218 7.20884 7.29466 7.81623 8.33411 9.09754 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.002901 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.550948 B = 9648.858936 C =10045.662638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.270 4.270 5 H 0.052 0.948 6 C -0.029 4.029 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.270 1.270 12 C 0.144 3.856 13 C 0.117 3.883 14 N -0.710 5.710 15 C 0.504 3.496 16 O -0.589 6.589 17 C -0.108 4.108 18 H 0.124 0.876 19 C -0.141 4.141 20 C 0.142 3.858 21 H 0.079 0.921 22 C -0.112 4.112 23 C -0.148 4.148 24 C 0.500 3.500 25 O -0.601 6.601 26 N -0.722 5.722 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.253 0.747 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.034 0.966 37 H 0.415 0.585 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 12.933 -19.909 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.318 5.318 4 C -0.401 4.401 5 H 0.070 0.930 6 C -0.228 4.228 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.195 1.195 12 C 0.017 3.983 13 C -0.010 4.010 14 N -0.362 5.362 15 C 0.291 3.709 16 O -0.470 6.470 17 C -0.130 4.130 18 H 0.142 0.858 19 C -0.199 4.199 20 C 0.037 3.963 21 H 0.097 0.903 22 C -0.150 4.150 23 C -0.187 4.187 24 C 0.288 3.712 25 O -0.483 6.483 26 N -0.375 5.375 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.251 0.749 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.144 0.856 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.181 12.635 -19.768 23.462 hybrid contribution -0.350 -0.622 1.770 1.909 sum -0.169 12.013 -17.998 21.640 Atomic orbital electron populations 1.22174 0.98953 0.99982 0.99861 1.20910 0.91555 0.86030 1.00490 1.43869 1.74491 1.11729 1.01693 1.19143 1.38368 0.94759 0.87788 0.93006 1.25805 0.96763 0.98414 1.01778 1.70087 1.36437 1.20313 1.28778 0.85504 0.77135 0.78648 0.80576 1.21489 1.21638 1.19455 1.21012 0.93374 0.95993 0.87937 1.21854 0.99475 0.95464 0.84182 1.45926 1.14310 1.52855 1.23120 1.21463 0.84571 0.78013 0.86806 1.90684 1.22293 1.62539 1.71453 1.21779 0.98000 1.00187 0.93044 0.85815 1.21824 0.95803 0.97569 1.04669 1.21748 0.85528 0.90126 0.98885 0.90261 1.22830 0.96787 1.04406 0.90938 1.22410 0.98190 0.96174 1.01952 1.21876 0.81392 0.86027 0.81872 1.90707 1.32576 1.55578 1.69483 1.46704 1.37882 1.33267 1.19615 0.94002 0.92466 0.95249 0.94302 0.92050 0.93769 0.92845 0.92488 0.93812 0.94712 0.74863 0.87505 0.92496 0.90746 0.85594 0.87370 0.86488 0.86387 0.76006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.20 10.21 71.98 0.73 -5.47 16 2 C 0.14 6.27 6.10 86.38 0.53 6.80 16 3 N -0.60 -28.51 2.43 -702.03 -1.71 -30.22 16 4 C -0.27 -14.44 9.42 84.03 0.79 -13.65 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.03 -1.60 5.00 84.86 0.42 -1.18 16 7 N -0.91 -51.90 11.43 21.65 0.25 -51.66 16 8 Si 0.95 44.00 29.60 68.60 2.03 46.04 16 9 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 C 0.14 5.40 5.82 86.38 0.50 5.91 16 13 C 0.12 4.06 6.00 86.38 0.52 4.58 16 14 N -0.71 -17.48 5.45 -463.07 -2.52 -20.00 16 15 C 0.50 12.41 6.93 87.66 0.61 13.02 16 16 O -0.59 -20.13 14.53 -3.00 -0.04 -20.18 16 17 C -0.11 -1.44 2.38 -11.54 -0.03 -1.47 16 18 H 0.12 1.21 8.13 -2.39 -0.02 1.19 16 19 C -0.14 -1.06 8.89 71.98 0.64 -0.42 16 20 C 0.14 2.04 2.56 45.45 0.12 2.16 16 21 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 22 C -0.11 -0.63 5.62 31.65 0.18 -0.45 16 23 C -0.15 -1.64 6.86 30.59 0.21 -1.43 16 24 C 0.50 11.88 8.43 87.90 0.74 12.62 16 25 O -0.60 -20.67 18.03 -3.03 -0.05 -20.73 16 26 N -0.72 -16.26 5.55 -439.45 -2.44 -18.70 16 27 H 0.04 1.64 6.66 -2.38 -0.02 1.62 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.63 7.83 -2.39 -0.02 1.61 16 31 H 0.06 3.27 5.53 -2.39 -0.01 3.26 16 32 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.05 2.00 8.04 -2.39 -0.02 1.98 16 34 H 0.06 1.93 7.86 -2.39 -0.02 1.91 16 35 H 0.04 1.67 6.65 -2.39 -0.02 1.66 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 7.26 7.89 -92.71 -0.73 6.53 16 38 H 0.11 0.13 7.32 -2.39 -0.02 0.11 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.52 7.56 -2.39 -0.02 0.50 16 41 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.11 0.21 7.88 -2.39 -0.02 0.20 16 43 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.40 11.25 7.42 -92.70 -0.69 10.56 16 Total: -1.00 -76.44 362.69 1.05 -75.39 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.42 Total: 19.04 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 5.96 Total: 21.01 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -6.42 Total: -120.57 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.10 Total: -40.90 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.04 kcal Total: -76.44 1.05 -75.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691042690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.669 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds