Wall clock time and date at job start Tue Mar 31 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00357 * 2 1 4 4 N 1.34774 * 120.00396 * 179.97438 * 2 1 3 5 5 C 1.46489 * 120.00698 * 186.37101 * 4 2 1 6 6 C 1.53002 * 109.47137 * 54.56404 * 5 4 2 7 7 C 1.53002 * 109.47346 * 294.56609 * 5 4 2 8 8 C 1.50697 * 109.47588 * 174.56039 * 5 4 2 9 9 O 1.21280 * 120.00221 * 142.32088 * 8 5 4 10 10 N 1.34782 * 120.00006 * 322.32830 * 8 5 4 11 11 C 1.46496 * 120.00088 * 185.24674 * 10 8 5 12 12 C 1.53005 * 109.47334 * 83.31277 * 11 10 8 13 13 H 1.08997 * 109.87531 * 297.15126 * 12 11 10 14 14 C 1.54321 * 110.01074 * 176.04724 * 12 11 10 15 15 C 1.55155 * 102.94379 * 218.31807 * 14 12 11 16 16 C 1.54690 * 101.67364 * 35.34047 * 15 14 12 17 17 N 1.47024 * 109.87866 * 58.16759 * 12 11 10 18 18 C 1.36940 * 125.64500 * 298.47674 * 17 12 11 19 19 H 1.08001 * 119.99751 * 316.38560 * 18 17 12 20 20 C 1.38808 * 120.00179 * 136.39188 * 18 17 12 21 21 N 1.31622 * 119.99854 * 346.42160 * 20 18 17 22 22 Si 1.86800 * 120.00155 * 166.41918 * 20 18 17 23 23 H 1.48502 * 109.47390 * 175.15732 * 22 20 18 24 24 H 1.48499 * 109.47194 * 55.15830 * 22 20 18 25 25 H 1.48497 * 109.47197 * 295.16133 * 22 20 18 26 26 H 1.08995 * 109.47193 * 274.98128 * 1 2 3 27 27 H 1.09008 * 109.46952 * 34.97722 * 1 2 3 28 28 H 1.09000 * 109.47053 * 154.97403 * 1 2 3 29 29 H 0.97003 * 119.99207 * 6.37687 * 4 2 1 30 30 H 1.09000 * 109.47798 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.46587 * 299.99936 * 6 5 4 32 32 H 1.08995 * 109.47095 * 59.99970 * 6 5 4 33 33 H 1.09003 * 109.46997 * 299.99778 * 7 5 4 34 34 H 1.08991 * 109.47470 * 59.99521 * 7 5 4 35 35 H 1.08999 * 109.47139 * 179.97438 * 7 5 4 36 36 H 0.97002 * 119.99523 * 5.24016 * 10 8 5 37 37 H 1.09001 * 109.47018 * 323.31860 * 11 10 8 38 38 H 1.08994 * 109.47213 * 203.31973 * 11 10 8 39 39 H 1.08998 * 110.72346 * 336.68427 * 14 12 11 40 40 H 1.09002 * 110.71629 * 99.95513 * 14 12 11 41 41 H 1.08999 * 111.00369 * 153.57665 * 15 14 12 42 42 H 1.08991 * 111.00804 * 277.43301 * 15 14 12 43 43 H 1.09005 * 110.39232 * 204.36385 * 16 15 14 44 44 H 1.09006 * 110.23914 * 82.11458 * 16 15 14 45 45 H 0.96997 * 120.00020 * 1.89639 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6390 -1.1711 0.1413 6 6 4.0315 -0.4020 1.4044 7 6 4.2712 -0.5014 -1.0805 8 6 4.1299 -2.5920 0.2456 9 8 5.1709 -2.9146 -0.2866 10 7 3.4120 -3.5045 0.9301 11 6 3.9434 -4.8550 1.1295 12 6 4.8892 -4.8587 2.3322 13 1 5.7413 -4.2080 2.1355 14 6 5.3792 -6.2945 2.6143 15 6 5.4035 -6.3552 4.1645 16 6 4.1807 -5.4814 4.5311 17 7 4.1745 -4.3979 3.5316 18 6 3.6028 -3.1643 3.6952 19 1 4.1334 -2.2774 3.3818 20 6 2.3414 -3.0538 4.2640 21 7 1.5851 -4.1224 4.4003 22 14 1.7174 -1.3887 4.8362 23 1 0.3108 -1.5179 5.2944 24 1 1.7848 -0.4216 3.7113 25 1 2.5607 -0.9028 5.9578 26 1 -0.3633 0.0892 1.0237 27 1 -0.3633 0.8421 -0.5892 28 1 -0.3633 -0.9312 -0.4347 29 1 1.7003 -2.0046 -0.0924 30 1 5.1165 -0.4045 1.5090 31 1 3.6765 0.6258 1.3290 32 1 3.5812 -0.8790 2.2749 33 1 3.9916 -1.0493 -1.9804 34 1 3.9163 0.5263 -1.1560 35 1 5.3561 -0.5040 -0.9755 36 1 2.5435 -3.2668 1.2909 37 1 4.4881 -5.1664 0.2381 38 1 3.1205 -5.5460 1.3122 39 1 4.6802 -7.0270 2.2106 40 1 6.3784 -6.4480 2.2067 41 1 5.2746 -7.3783 4.5175 42 1 6.3221 -5.9205 4.5582 43 1 4.2942 -5.0712 5.5346 44 1 3.2641 -6.0673 4.4613 45 1 1.9197 -4.9913 4.1286 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691102932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:40 Heat of formation + Delta-G solvation = -58.908487 kcal Electronic energy + Delta-G solvation = -26622.092390 eV Core-core repulsion = 23060.907186 eV Total energy + Delta-G solvation = -3561.185203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38078 -38.87810 -37.63654 -35.17923 -33.93130 -32.87917 -31.90752 -29.34701 -28.91151 -28.82237 -26.96291 -25.25722 -24.15673 -22.38503 -20.50837 -20.30073 -19.65662 -19.02828 -18.07669 -17.35021 -16.37478 -15.52533 -15.19798 -14.99036 -14.97518 -14.37926 -14.05630 -13.96276 -13.50411 -13.50174 -13.16348 -12.77598 -12.61569 -12.39251 -12.24685 -12.03837 -11.89779 -11.74249 -11.61004 -11.50079 -11.25564 -10.92138 -10.90407 -10.60436 -10.56001 -10.30763 -10.12063 -9.97273 -9.79175 -9.42418 -9.09426 -8.98392 -8.52253 -8.38255 -6.77007 -6.08372 -3.52209 2.77321 2.88432 3.34435 3.40324 3.49090 3.54874 3.75089 4.40815 4.87339 5.05619 5.21984 5.24662 5.26774 5.34103 5.34426 5.46576 5.49326 5.55204 5.70634 5.81364 5.94581 5.99733 6.04949 6.06376 6.11385 6.18102 6.21164 6.27053 6.36732 6.42689 6.46028 6.50652 6.61825 6.72538 6.88916 6.96799 7.02001 7.13013 7.60761 8.03123 8.11877 8.35149 8.48539 8.73913 8.93647 9.68866 10.40562 11.11752 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.007242 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.251559 B = 3865.173542 C = 5154.771218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.518 3.482 3 O -0.543 6.543 4 N -0.722 5.722 5 C 0.165 3.835 6 C -0.168 4.168 7 C -0.144 4.144 8 C 0.516 3.484 9 O -0.552 6.552 10 N -0.686 5.686 11 C 0.114 3.886 12 C 0.139 3.861 13 H 0.038 0.962 14 C -0.124 4.124 15 C -0.135 4.135 16 C 0.134 3.866 17 N -0.590 5.590 18 C -0.321 4.321 19 H 0.050 0.950 20 C -0.014 4.014 21 N -0.916 5.916 22 Si 1.056 2.944 23 H -0.284 1.284 24 H -0.285 1.285 25 H -0.291 1.291 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.400 0.600 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.028 0.972 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 0.711 -7.388 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.420 6.420 4 N -0.377 5.377 5 C 0.076 3.924 6 C -0.226 4.226 7 C -0.202 4.202 8 C 0.300 3.700 9 O -0.430 6.430 10 N -0.334 5.334 11 C -0.012 4.012 12 C 0.032 3.968 13 H 0.056 0.944 14 C -0.163 4.163 15 C -0.174 4.174 16 C 0.009 3.991 17 N -0.316 5.316 18 C -0.450 4.450 19 H 0.068 0.932 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.885 3.115 23 H -0.210 1.210 24 H -0.211 1.211 25 H -0.218 1.218 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.242 0.758 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.278 2.093 -7.024 7.440 hybrid contribution 0.673 -1.238 -0.284 1.437 sum -0.605 0.856 -7.308 7.383 Atomic orbital electron populations 1.21904 0.91829 1.04412 1.05225 1.20710 0.90439 0.83340 0.74924 1.90640 1.70485 1.31450 1.49441 1.46218 1.07092 1.09272 1.75114 1.20544 0.80003 0.93499 0.98360 1.22327 1.02241 1.01965 0.96027 1.21991 1.01390 1.01410 0.95424 1.20266 0.84882 0.86339 0.78498 1.90644 1.24189 1.79835 1.48305 1.45708 1.22211 1.12222 1.53256 1.21920 0.98189 0.82692 0.98386 1.21499 0.94021 0.92834 0.88485 0.94438 1.22504 1.00173 0.97059 0.96530 1.22726 0.99870 0.99265 0.95531 1.21637 0.93835 0.90116 0.93546 1.44376 1.65667 1.12592 1.08950 1.19579 0.99179 0.82751 1.43511 0.93218 1.26088 0.92091 1.04707 0.98933 1.70777 1.36615 1.00317 1.47834 0.83650 0.76445 0.74490 0.76884 1.21000 1.21134 1.21838 0.88440 0.89048 0.90352 0.76524 0.91653 0.89727 0.89858 0.92807 0.90346 0.91011 0.75751 0.91870 0.91287 0.91871 0.92090 0.92230 0.92163 0.94152 0.95426 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.33 36.00 0.37 -1.45 16 2 C 0.52 7.60 7.34 -10.99 -0.08 7.52 16 3 O -0.54 -9.63 13.35 5.55 0.07 -9.56 16 4 N -0.72 -10.54 4.78 -48.69 -0.23 -10.77 16 5 C 0.16 2.79 0.98 -132.98 -0.13 2.66 16 6 C -0.17 -3.08 8.27 37.16 0.31 -2.77 16 7 C -0.14 -2.29 7.98 37.16 0.30 -2.00 16 8 C 0.52 9.68 6.56 -10.98 -0.07 9.61 16 9 O -0.55 -11.73 15.72 5.56 0.09 -11.64 16 10 N -0.69 -12.64 3.57 -60.30 -0.22 -12.86 16 11 C 0.11 2.11 5.58 -4.04 -0.02 2.09 16 12 C 0.14 2.80 3.44 -66.95 -0.23 2.57 16 13 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.12 -2.09 6.48 -24.90 -0.16 -2.25 16 15 C -0.14 -2.35 7.07 -24.70 -0.17 -2.53 16 16 C 0.13 2.89 6.04 -2.65 -0.02 2.87 16 17 N -0.59 -13.50 2.73 -162.71 -0.44 -13.95 16 18 C -0.32 -7.92 7.66 -15.06 -0.12 -8.04 16 19 H 0.05 1.29 5.91 -52.49 -0.31 0.98 16 20 C -0.01 -0.35 5.33 -17.43 -0.09 -0.45 16 21 N -0.92 -24.62 13.44 55.49 0.75 -23.87 16 22 Si 1.06 23.40 29.52 -169.99 -5.02 18.39 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -5.95 6.91 56.52 0.39 -5.56 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 28 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.40 5.06 7.44 -40.82 -0.30 4.76 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.56 6.00 -51.93 -0.31 1.25 16 32 H 0.08 1.69 5.45 -51.93 -0.28 1.41 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.26 6.36 -51.93 -0.33 0.93 16 35 H 0.07 1.16 7.88 -51.93 -0.41 0.76 16 36 H 0.41 7.59 7.10 -40.82 -0.29 7.30 16 37 H 0.06 1.13 7.56 -51.93 -0.39 0.73 16 38 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 39 H 0.06 0.98 7.83 -51.93 -0.41 0.58 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.64 6.49 -51.93 -0.34 0.30 16 45 H 0.27 7.36 5.66 -40.82 -0.23 7.13 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -30.06 350.45 -6.90 -36.96 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -7.06 Total: 14.18 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -0.12 Total: 7.84 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.15 Total: -61.45 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.16 Total: -21.20 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.06 -6.90 -36.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691102932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.950 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds