Wall clock time and date at job start Tue Mar 31 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46726 * 2 1 4 4 C 1.53001 * 109.47157 * 119.99893 * 2 1 3 5 5 N 1.46490 * 109.47264 * 295.00098 * 4 2 1 6 6 C 1.36935 * 120.00121 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99569 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00172 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47055 * 180.02562 * 10 8 6 12 12 H 1.48505 * 109.46653 * 299.99639 * 10 8 6 13 13 H 1.48495 * 109.47483 * 60.00002 * 10 8 6 14 14 C 1.53002 * 109.47505 * 240.00409 * 2 1 3 15 15 N 1.46497 * 109.47413 * 64.99515 * 14 2 1 16 16 C 1.34774 * 120.00109 * 180.02562 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 H 1.08997 * 110.02244 * 300.06516 * 18 16 15 20 20 C 1.53876 * 110.03193 * 61.45942 * 18 16 15 21 21 C 1.54262 * 106.60156 * 119.28452 * 20 18 16 22 22 C 1.54887 * 104.19748 * 23.60509 * 21 20 18 23 23 H 1.08999 * 110.75470 * 80.55806 * 22 21 20 24 24 C 1.50704 * 110.75813 * 203.74842 * 22 21 20 25 25 N 1.34782 * 119.99588 * 298.54447 * 24 22 21 26 26 O 1.21279 * 120.00081 * 118.54527 * 24 22 21 27 27 C 1.54272 * 110.02822 * 178.62245 * 18 16 15 28 28 H 1.09005 * 109.47118 * 60.00059 * 1 2 3 29 29 H 1.09007 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47555 * 299.99865 * 1 2 3 31 31 H 1.09003 * 109.46836 * 174.99805 * 4 2 1 32 32 H 1.08999 * 109.47071 * 55.00844 * 4 2 1 33 33 H 0.97000 * 120.00577 * 0.02562 * 5 4 2 34 34 H 0.97001 * 119.99885 * 359.97438 * 9 8 6 35 35 H 1.09001 * 109.47514 * 185.00110 * 14 2 1 36 36 H 1.09005 * 109.46529 * 305.00036 * 14 2 1 37 37 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 38 38 H 1.09000 * 110.02768 * 238.56598 * 20 18 16 39 39 H 1.08998 * 110.03542 * 359.94576 * 20 18 16 40 40 H 1.08998 * 110.49219 * 142.28822 * 21 20 18 41 41 H 1.09008 * 110.48340 * 264.93005 * 21 20 18 42 42 H 0.96995 * 119.99941 * 0.02562 * 25 24 22 43 43 H 0.97003 * 119.99403 * 179.97438 * 25 24 22 44 44 H 1.08996 * 110.48870 * 335.78330 * 27 18 16 45 45 H 1.08998 * 110.48662 * 98.42925 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 0.0353 2.4423 6 6 2.0010 -0.4208 3.6855 7 1 2.5620 -1.3381 3.7864 8 6 1.6334 0.2958 4.8161 9 7 0.9492 1.4135 4.6932 10 14 2.1096 -0.3262 6.5120 11 1 1.6009 0.6124 7.5443 12 1 1.5170 -1.6702 6.7306 13 1 3.5886 -0.4155 6.6092 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9956 -0.4135 -3.6660 17 8 2.6249 -1.4440 -3.7793 18 6 1.5974 0.3651 -4.8932 19 1 0.5120 0.4506 -4.9451 20 6 2.2352 1.7651 -4.8593 21 6 3.1377 1.8686 -6.1061 22 6 2.5425 0.8337 -7.0928 23 1 1.6725 1.2444 -7.6051 24 6 3.5822 0.3841 -8.0869 25 7 4.1473 1.2785 -8.9219 26 8 3.9104 -0.7824 -8.1354 27 6 2.1346 -0.3333 -6.1595 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 1.1482 0.8590 2.3518 34 1 0.7022 1.7366 3.8125 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7197 -1.2952 37 1 1.1488 0.8595 -2.3517 38 1 1.4594 2.5298 -4.8955 39 1 2.8321 1.8816 -3.9547 40 1 3.0893 2.8716 -6.5300 41 1 4.1662 1.6087 -5.8552 42 1 3.8850 2.2115 -8.8828 43 1 4.8167 0.9892 -9.5615 44 1 3.0010 -0.9487 -5.9173 45 1 1.3541 -0.9371 -6.6224 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698766854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:34 Heat of formation + Delta-G solvation = -93.162819 kcal Electronic energy + Delta-G solvation = -23742.493971 eV Core-core repulsion = 20179.823388 eV Total energy + Delta-G solvation = -3562.670583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70726 -39.59768 -37.38254 -36.61446 -34.57909 -34.04922 -32.70709 -30.34686 -29.53512 -29.17596 -26.56776 -25.06526 -23.23324 -22.59424 -21.82690 -20.37073 -20.16026 -19.54199 -18.09525 -17.42307 -17.17366 -16.62994 -16.45546 -16.00154 -15.34237 -14.90478 -14.70473 -14.53477 -14.13513 -13.90744 -13.68293 -13.59844 -13.16812 -12.84575 -12.54145 -12.38025 -12.23472 -11.98710 -11.66848 -11.54157 -11.21989 -11.08458 -11.01181 -10.84326 -10.64822 -10.61990 -10.38261 -10.22805 -10.08195 -9.98188 -9.78523 -9.17494 -9.05357 -8.88416 -7.00712 -6.11054 -3.10342 2.28001 2.58788 3.00118 3.24393 3.52442 3.55953 3.73174 3.99807 4.03322 4.34934 4.66674 4.73880 4.75018 4.83952 4.95535 5.04273 5.05797 5.12648 5.13724 5.23468 5.29148 5.39051 5.52825 5.61322 5.71886 5.72720 5.82587 5.85616 5.92958 5.95379 6.11390 6.15859 6.28340 6.37808 6.45588 6.52093 6.67931 6.77852 6.91410 7.45878 7.81342 7.89473 8.18689 8.75422 9.22530 10.08828 10.23689 11.37582 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039536 B = 0.002191 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.049615 B =12775.727752 C =12884.505920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.166 3.834 5 N -0.742 5.742 6 C -0.330 4.330 7 H 0.065 0.935 8 C -0.047 4.047 9 N -0.945 5.945 10 Si 1.081 2.919 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.295 1.295 14 C 0.126 3.874 15 N -0.726 5.726 16 C 0.514 3.486 17 O -0.536 6.536 18 C -0.115 4.115 19 H 0.102 0.898 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.118 4.118 23 H 0.106 0.894 24 C 0.523 3.477 25 N -0.858 5.858 26 O -0.536 6.536 27 C -0.091 4.091 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.367 0.633 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.399 0.601 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.401 0.599 43 H 0.400 0.600 44 H 0.100 0.900 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 5.444 -27.783 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.388 5.388 6 C -0.461 4.461 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.591 5.591 10 Si 0.911 3.089 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.223 1.223 14 C 0.003 3.997 15 N -0.377 5.377 16 C 0.300 3.700 17 O -0.413 6.413 18 C -0.137 4.137 19 H 0.120 0.880 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.139 4.139 23 H 0.124 0.876 24 C 0.308 3.692 25 N -0.421 5.421 26 O -0.411 6.411 27 C -0.129 4.129 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.200 0.800 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.234 0.766 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.229 0.771 43 H 0.231 0.769 44 H 0.119 0.881 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.203 3.981 -26.053 26.382 hybrid contribution -0.182 0.715 -1.894 2.033 sum 1.021 4.696 -27.947 28.357 Atomic orbital electron populations 1.21782 0.94705 1.02035 1.01272 1.21562 0.96641 1.00398 0.94413 0.90714 1.20513 0.96684 0.94137 0.84919 1.42340 1.67580 1.27352 1.01523 1.20045 1.33058 1.07958 0.85053 0.91741 1.25793 0.99535 0.96658 1.02417 1.70897 1.41051 1.22080 1.25029 0.83229 0.75446 0.74881 0.75299 1.21039 1.22255 1.22254 1.21394 1.00136 0.95306 0.82910 1.46067 1.57840 1.27875 1.05939 1.20508 0.79312 0.85621 0.84548 1.90717 1.39657 1.24427 1.86495 1.21980 1.02183 0.95704 0.93824 0.88012 1.22147 0.99305 0.95055 0.98917 1.22343 0.99936 0.98095 0.94619 1.22336 0.97608 0.98534 0.95438 0.87633 1.20552 0.81995 0.85671 0.80973 1.43904 1.45668 1.12224 1.40342 1.90783 1.62591 1.17955 1.69818 1.22174 1.03218 0.95994 0.91527 0.93741 0.92688 0.91608 0.96039 0.95895 0.79968 0.93535 0.91387 0.91337 0.76606 0.90268 0.90625 0.90520 0.90804 0.77120 0.76929 0.88148 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.94 37.15 0.33 -1.69 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.17 3.34 5.65 -4.05 -0.02 3.32 16 5 N -0.74 -18.65 5.33 -59.91 -0.32 -18.97 16 6 C -0.33 -9.43 9.99 -15.06 -0.15 -9.58 16 7 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 8 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 9 N -0.94 -29.19 13.70 55.49 0.76 -28.43 16 10 Si 1.08 26.11 29.92 -169.99 -5.09 21.02 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.73 -8.16 5.13 -60.29 -0.31 -8.47 16 16 C 0.51 6.35 6.93 -10.99 -0.08 6.27 16 17 O -0.54 -9.08 15.41 5.56 0.09 -8.99 16 18 C -0.12 -0.96 3.30 -90.65 -0.30 -1.25 16 19 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 20 C -0.12 -0.71 6.36 -25.61 -0.16 -0.87 16 21 C -0.11 -0.61 6.22 -25.08 -0.16 -0.77 16 22 C -0.12 -0.78 3.29 -89.77 -0.30 -1.07 16 23 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 24 C 0.52 4.54 7.42 -10.98 -0.08 4.46 16 25 N -0.86 -3.84 8.82 31.22 0.28 -3.57 16 26 O -0.54 -7.43 16.63 5.56 0.09 -7.34 16 27 C -0.09 -0.88 5.17 -25.07 -0.13 -1.01 16 28 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.10 7.18 -51.93 -0.37 0.72 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.37 9.27 5.68 -40.82 -0.23 9.04 16 34 H 0.25 7.66 6.77 -40.82 -0.28 7.38 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.49 7.62 -40.82 -0.31 3.18 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.54 7.59 -51.93 -0.39 0.15 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.52 8.04 -51.92 -0.42 0.10 16 42 H 0.40 0.53 8.82 -40.82 -0.36 0.17 16 43 H 0.40 1.58 8.93 -40.82 -0.36 1.21 16 44 H 0.10 1.37 6.28 -51.93 -0.33 1.04 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -37.75 364.05 -7.68 -45.43 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.28 Total: 7.68 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.38 Total: -3.85 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.41 Total: -59.43 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.18 Total: -16.34 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.09 Total: 21.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.75 -7.68 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698766854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.736 kcal (2) G-P(sol) polarization free energy of solvation -37.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds