Wall clock time and date at job start Tue Mar 31 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46726 * 2 1 4 4 C 1.53001 * 109.47157 * 119.99893 * 2 1 3 5 5 N 1.46490 * 109.47264 * 295.00098 * 4 2 1 6 6 C 1.36935 * 120.00121 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00139 * 0.02562 * 6 5 4 8 8 C 1.38816 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99569 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00172 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47055 * 180.02562 * 10 8 6 12 12 H 1.48505 * 109.46653 * 299.99639 * 10 8 6 13 13 H 1.48495 * 109.47483 * 60.00002 * 10 8 6 14 14 C 1.53002 * 109.47505 * 240.00409 * 2 1 3 15 15 N 1.46497 * 109.47413 * 64.99515 * 14 2 1 16 16 C 1.34774 * 120.00109 * 180.02562 * 15 14 2 17 17 O 1.21277 * 119.99900 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99623 * 180.02562 * 16 15 14 19 19 H 1.08997 * 110.02244 * 300.06516 * 18 16 15 20 20 C 1.53876 * 110.03193 * 61.45942 * 18 16 15 21 21 C 1.54262 * 106.60156 * 119.28452 * 20 18 16 22 22 C 1.54887 * 104.19748 * 23.60509 * 21 20 18 23 23 H 1.08999 * 110.75470 * 80.55806 * 22 21 20 24 24 C 1.50704 * 110.75813 * 203.74842 * 22 21 20 25 25 N 1.34782 * 119.99588 * 298.54447 * 24 22 21 26 26 O 1.21279 * 120.00081 * 118.54527 * 24 22 21 27 27 C 1.54272 * 110.02822 * 178.62245 * 18 16 15 28 28 H 1.09005 * 109.47118 * 60.00059 * 1 2 3 29 29 H 1.09007 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47555 * 299.99865 * 1 2 3 31 31 H 1.09003 * 109.46836 * 174.99805 * 4 2 1 32 32 H 1.08999 * 109.47071 * 55.00844 * 4 2 1 33 33 H 0.97000 * 120.00577 * 0.02562 * 5 4 2 34 34 H 0.97001 * 119.99885 * 359.97438 * 9 8 6 35 35 H 1.09001 * 109.47514 * 185.00110 * 14 2 1 36 36 H 1.09005 * 109.46529 * 305.00036 * 14 2 1 37 37 H 0.97005 * 119.99459 * 0.02562 * 15 14 2 38 38 H 1.09000 * 110.02768 * 238.56598 * 20 18 16 39 39 H 1.08998 * 110.03542 * 359.94576 * 20 18 16 40 40 H 1.08998 * 110.49219 * 142.28822 * 21 20 18 41 41 H 1.09008 * 110.48340 * 264.93005 * 21 20 18 42 42 H 0.96995 * 119.99941 * 0.02562 * 25 24 22 43 43 H 0.97003 * 119.99403 * 179.97438 * 25 24 22 44 44 H 1.08996 * 110.48870 * 335.78330 * 27 18 16 45 45 H 1.08998 * 110.48662 * 98.42925 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 0.0353 2.4423 6 6 2.0010 -0.4208 3.6855 7 1 2.5620 -1.3381 3.7864 8 6 1.6334 0.2958 4.8161 9 7 0.9492 1.4135 4.6932 10 14 2.1096 -0.3262 6.5120 11 1 1.6009 0.6124 7.5443 12 1 1.5170 -1.6702 6.7306 13 1 3.5886 -0.4155 6.6092 14 6 2.0400 -0.7212 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9956 -0.4135 -3.6660 17 8 2.6249 -1.4440 -3.7793 18 6 1.5974 0.3651 -4.8932 19 1 0.5120 0.4506 -4.9451 20 6 2.2352 1.7651 -4.8593 21 6 3.1377 1.8686 -6.1061 22 6 2.5425 0.8337 -7.0928 23 1 1.6725 1.2444 -7.6051 24 6 3.5822 0.3841 -8.0869 25 7 4.1473 1.2785 -8.9219 26 8 3.9104 -0.7824 -8.1354 27 6 2.1346 -0.3333 -6.1595 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 1.1482 0.8590 2.3518 34 1 0.7022 1.7366 3.8125 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7197 -1.2952 37 1 1.1488 0.8595 -2.3517 38 1 1.4594 2.5298 -4.8955 39 1 2.8321 1.8816 -3.9547 40 1 3.0893 2.8716 -6.5300 41 1 4.1662 1.6087 -5.8552 42 1 3.8850 2.2115 -8.8828 43 1 4.8167 0.9892 -9.5615 44 1 3.0010 -0.9487 -5.9173 45 1 1.3541 -0.9371 -6.6224 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698766854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:34 Heat of formation + Delta-G solvation = -123.859683 kcal Electronic energy + Delta-G solvation = -23743.825087 eV Core-core repulsion = 20179.823388 eV Total energy + Delta-G solvation = -3564.001698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.49637 -40.45725 -38.55628 -37.61240 -36.23362 -34.65637 -34.24455 -31.87853 -30.54006 -29.74062 -27.77739 -26.78350 -24.79483 -23.61466 -22.66119 -21.57763 -20.78791 -20.51141 -19.43803 -18.70722 -17.88537 -17.51021 -17.21515 -17.07482 -16.50152 -16.41417 -15.80214 -15.65145 -15.41766 -15.17407 -14.97130 -14.54322 -14.26333 -14.24778 -13.75273 -13.61858 -13.13503 -12.83427 -12.71759 -12.64482 -12.29945 -12.12901 -12.11325 -12.07822 -11.88447 -11.80722 -11.80386 -11.65559 -11.28609 -10.96216 -10.95233 -10.75078 -10.64067 -10.13298 -9.12808 -8.41818 -5.35411 1.58337 1.61700 1.65780 1.67951 1.84703 2.11974 2.65565 2.70831 3.37490 3.40062 3.46498 3.59745 3.79106 3.86170 3.97388 4.10346 4.19065 4.25969 4.35584 4.40626 4.44367 4.53544 4.57529 4.60647 4.69048 4.75241 4.83346 4.94066 4.95818 5.00887 5.09318 5.22255 5.22958 5.30082 5.32649 5.36592 5.46038 5.56594 5.91533 6.49249 6.49973 6.55033 7.08067 7.25225 7.38523 7.98277 8.08987 9.10466 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039536 B = 0.002191 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.049615 B =12775.727752 C =12884.505920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.081 0.919 4 C 0.161 3.839 5 N -0.752 5.752 6 C -0.339 4.339 7 H 0.062 0.938 8 C -0.103 4.103 9 N -0.972 5.972 10 Si 1.128 2.872 11 H -0.290 1.290 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.138 3.862 15 N -0.712 5.712 16 C 0.509 3.491 17 O -0.591 6.591 18 C -0.106 4.106 19 H 0.135 0.865 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.107 4.107 23 H 0.145 0.855 24 C 0.516 3.484 25 N -0.835 5.835 26 O -0.601 6.601 27 C -0.098 4.098 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.015 0.985 32 H 0.017 0.983 33 H 0.364 0.636 34 H 0.245 0.755 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.416 0.584 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.420 0.580 43 H 0.404 0.596 44 H 0.051 0.949 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 7.619 -29.106 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.100 0.900 4 C 0.034 3.966 5 N -0.397 5.397 6 C -0.470 4.470 7 H 0.080 0.920 8 C -0.294 4.294 9 N -0.620 5.620 10 Si 0.952 3.048 11 H -0.216 1.216 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.364 5.364 16 C 0.297 3.703 17 O -0.471 6.471 18 C -0.127 4.127 19 H 0.153 0.847 20 C -0.150 4.150 21 C -0.146 4.146 22 C -0.128 4.128 23 H 0.162 0.838 24 C 0.302 3.698 25 N -0.399 5.399 26 O -0.482 6.482 27 C -0.137 4.137 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.197 0.803 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.068 0.932 42 H 0.252 0.748 43 H 0.235 0.765 44 H 0.069 0.931 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.199 6.228 -27.431 28.130 hybrid contribution 0.174 0.010 -1.568 1.578 sum 0.372 6.238 -29.000 29.665 Atomic orbital electron populations 1.21729 0.93604 1.01934 1.01947 1.21324 0.97315 1.00013 0.92481 0.90032 1.20657 0.96318 0.94024 0.85611 1.42484 1.67533 1.27652 1.02029 1.20384 1.32285 1.07724 0.86631 0.91966 1.27215 0.99479 0.96501 1.06196 1.70996 1.42890 1.23413 1.24657 0.82623 0.76112 0.74895 0.71122 1.21588 1.20514 1.20497 1.21067 0.99170 0.95068 0.83428 1.45886 1.57564 1.28089 1.04868 1.21346 0.78099 0.85118 0.85707 1.90706 1.42099 1.27040 1.87251 1.22045 1.04137 0.96051 0.90444 0.84676 1.22219 1.00127 0.94152 0.98545 1.22380 0.98388 0.99603 0.94213 1.22350 0.98292 0.97357 0.94796 0.83760 1.21025 0.82210 0.85149 0.81458 1.43735 1.44531 1.12721 1.38886 1.90763 1.64841 1.20770 1.71802 1.22111 1.01278 0.96955 0.93318 0.89885 0.93210 0.94007 0.96667 0.96477 0.80251 0.94428 0.92775 0.92306 0.74623 0.86463 0.91863 0.86535 0.93195 0.74837 0.76487 0.93051 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 8.94 71.98 0.64 -3.04 16 2 C -0.09 -2.74 2.46 -10.80 -0.03 -2.76 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 6.56 5.65 86.38 0.49 7.05 16 5 N -0.75 -38.16 5.33 -343.47 -1.83 -39.99 16 6 C -0.34 -19.47 9.99 84.03 0.84 -18.63 16 7 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 8 C -0.10 -6.00 5.50 84.86 0.47 -5.53 16 9 N -0.97 -60.45 13.70 21.65 0.30 -60.15 16 10 Si 1.13 52.32 29.92 68.60 2.05 54.38 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.14 3.76 5.06 86.38 0.44 4.20 16 15 N -0.71 -14.87 5.13 -463.06 -2.37 -17.24 16 16 C 0.51 12.27 6.93 87.66 0.61 12.87 16 17 O -0.59 -20.90 15.41 -3.02 -0.05 -20.95 16 18 C -0.11 -1.51 3.30 -10.81 -0.04 -1.54 16 19 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 20 C -0.11 -0.95 6.36 31.32 0.20 -0.75 16 21 C -0.11 -0.83 6.22 31.67 0.20 -0.64 16 22 C -0.11 -1.16 3.29 -10.25 -0.03 -1.19 16 23 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 24 C 0.52 8.59 7.42 87.66 0.65 9.24 16 25 N -0.84 -5.87 8.82 -173.52 -1.53 -7.40 16 26 O -0.60 -17.59 16.63 -3.03 -0.05 -17.64 16 27 C -0.10 -1.87 5.17 31.67 0.16 -1.70 16 28 H 0.08 1.62 7.18 -2.38 -0.02 1.60 16 29 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.04 1.36 7.18 -2.39 -0.02 1.34 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.36 18.66 5.68 -92.71 -0.53 18.13 16 34 H 0.25 15.06 6.77 -92.71 -0.63 14.43 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.42 5.92 7.62 -92.70 -0.71 5.21 16 38 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.06 0.73 7.59 -2.39 -0.02 0.72 16 40 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.05 0.64 8.04 -2.38 -0.02 0.62 16 42 H 0.42 -0.33 8.82 -92.71 -0.82 -1.14 16 43 H 0.40 2.65 8.93 -92.71 -0.83 1.82 16 44 H 0.05 1.52 6.28 -2.39 -0.02 1.50 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -87.32 364.05 -0.59 -87.91 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -1.71 Total: 23.52 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.60 Total: -2.43 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -5.44 Total: -124.79 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.10 Total: -38.59 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.38 kcal Total: -87.32 -0.59 -87.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698766854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.945 kcal (2) G-P(sol) polarization free energy of solvation -87.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds