Wall clock time and date at job start Tue Mar 31 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47003 * 2 1 4 4 C 1.53001 * 109.47372 * 240.00163 * 2 1 3 5 5 N 1.46501 * 109.47305 * 185.00128 * 4 2 1 6 6 C 1.36935 * 119.99746 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00066 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99849 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00400 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46823 * 59.99878 * 10 8 6 12 12 H 1.48506 * 109.47053 * 300.00240 * 10 8 6 13 13 H 1.48502 * 109.47227 * 179.97438 * 10 8 6 14 14 N 1.46500 * 109.47365 * 120.00054 * 2 1 3 15 15 C 1.46505 * 119.99784 * 59.99932 * 14 2 1 16 16 C 1.34771 * 120.00356 * 240.00201 * 14 2 1 17 17 O 1.21287 * 119.99781 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00406 * 179.97438 * 16 14 2 19 19 H 1.08994 * 109.30017 * 329.56267 * 18 16 14 20 20 C 1.52923 * 109.29844 * 89.14234 * 18 16 14 21 21 C 1.53265 * 108.71350 * 171.26588 * 20 18 16 22 22 C 1.53078 * 108.24651 * 292.18235 * 21 20 18 23 23 C 1.50179 * 109.88844 * 48.96473 * 22 21 20 24 24 O 1.21283 * 118.24090 * 162.39490 * 23 22 21 25 25 N 1.33355 * 123.50819 * 342.42286 * 23 22 21 26 26 C 1.46494 * 117.94266 * 182.24324 * 25 23 22 27 27 H 1.08997 * 109.47325 * 60.00285 * 1 2 3 28 28 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47404 * 299.99820 * 1 2 3 30 30 H 1.09002 * 109.47073 * 64.99837 * 4 2 1 31 31 H 1.09003 * 109.46928 * 305.00057 * 4 2 1 32 32 H 0.96989 * 120.00007 * 359.97438 * 5 4 2 33 33 H 0.97001 * 119.99621 * 0.02562 * 9 8 6 34 34 H 1.08998 * 109.46996 * 90.00099 * 15 14 2 35 35 H 1.09004 * 109.46934 * 210.00177 * 15 14 2 36 36 H 1.09002 * 109.46931 * 329.99934 * 15 14 2 37 37 H 1.09002 * 109.60299 * 290.82032 * 20 18 16 38 38 H 1.09000 * 109.60664 * 51.31004 * 20 18 16 39 39 H 1.09004 * 109.71013 * 172.53756 * 21 20 18 40 40 H 1.08997 * 109.85267 * 51.90817 * 21 20 18 41 41 H 1.09003 * 109.39776 * 288.84299 * 22 21 20 42 42 H 1.08995 * 109.40107 * 169.09638 * 22 21 20 43 43 H 1.09004 * 109.47183 * 274.70097 * 26 25 23 44 44 H 1.09003 * 109.47747 * 34.70509 * 26 25 23 45 45 H 1.09003 * 109.47218 * 154.70337 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1838 -1.4388 -2.2067 7 1 3.6467 -1.8439 -3.0516 8 6 5.5672 -1.5380 -2.1514 9 7 6.2218 -1.0438 -1.1220 10 14 6.5000 -2.3728 -3.5379 11 1 6.2426 -1.6532 -4.8112 12 1 6.0442 -3.7805 -3.6639 13 1 7.9549 -2.3477 -3.2412 14 7 2.0183 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0865 1.1254 1.8912 18 6 3.2951 -0.7459 3.3140 19 1 2.5713 -1.5041 3.6128 20 6 4.6316 -1.4192 2.9993 21 6 5.2352 -1.9482 4.3050 22 6 5.6247 -0.7492 5.1733 23 6 4.4800 0.2199 5.2494 24 8 4.4869 1.0477 6.1357 25 7 3.4563 0.2185 4.3948 26 6 2.4295 1.2516 4.5520 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7516 -0.1582 -2.1370 31 1 1.6054 -1.7198 -1.2952 32 1 3.9824 -0.4622 -0.4320 33 1 5.7374 -0.6106 -0.4018 34 1 2.4157 -2.7377 0.9716 35 1 1.6238 -2.2853 2.5002 36 1 0.6904 -2.3002 0.9846 37 1 4.4698 -2.2497 2.3122 38 1 5.3088 -0.6943 2.5476 39 1 6.1203 -2.5452 4.0854 40 1 4.5017 -2.5593 4.8310 41 1 6.4913 -0.2525 4.7369 42 1 5.8741 -1.0946 6.1766 43 1 1.6930 0.9232 5.2853 44 1 2.8941 2.1769 4.8928 45 1 1.9374 1.4234 3.5946 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698855843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:57 Heat of formation + Delta-G solvation = -46.634283 kcal Electronic energy + Delta-G solvation = -26186.709536 eV Core-core repulsion = 22626.056582 eV Total energy + Delta-G solvation = -3560.652954 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06139 -39.45937 -36.88868 -36.03565 -34.38477 -34.00442 -32.28765 -30.19641 -29.53448 -27.12182 -26.87105 -25.56141 -25.00873 -22.78145 -22.28243 -21.39267 -19.13685 -18.59529 -17.42799 -17.27777 -16.76539 -16.47911 -15.91379 -15.52730 -14.96943 -14.71423 -14.27088 -13.82757 -13.81022 -13.62795 -13.61011 -13.45805 -13.18789 -12.76349 -12.57631 -12.47406 -12.22343 -12.09854 -11.96057 -11.76362 -11.54936 -11.42327 -11.05665 -10.95616 -10.78341 -10.67760 -10.51787 -10.01276 -9.96785 -9.54322 -9.22149 -8.92480 -8.66633 -8.45903 -7.02401 -6.11536 -3.11520 2.54652 2.59839 2.91287 3.25121 3.48692 3.52559 3.70065 4.34109 4.48722 4.62131 4.64539 4.68885 4.80521 4.99157 5.08003 5.19049 5.25652 5.29800 5.41721 5.47191 5.53985 5.58169 5.58987 5.65953 5.72918 5.78327 5.83689 5.88891 5.90815 5.93918 5.96315 5.99921 6.18611 6.21394 6.29828 6.32201 6.57688 6.78352 7.36375 7.49819 7.77541 8.13393 8.27063 8.74176 9.21100 10.07765 10.23525 11.36083 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.005523 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.592142 B = 5068.592536 C = 6387.412269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.100 0.900 4 C 0.150 3.850 5 N -0.738 5.738 6 C -0.333 4.333 7 H 0.063 0.937 8 C -0.044 4.044 9 N -0.940 5.940 10 Si 1.079 2.921 11 H -0.296 1.296 12 H -0.296 1.296 13 H -0.285 1.285 14 N -0.592 5.592 15 C 0.073 3.927 16 C 0.507 3.493 17 O -0.526 6.526 18 C 0.128 3.872 19 H 0.095 0.905 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.136 4.136 23 C 0.522 3.478 24 O -0.557 6.557 25 N -0.585 5.585 26 C 0.076 3.924 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.022 0.978 32 H 0.368 0.632 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 -4.244 10.195 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.118 0.882 4 C 0.022 3.978 5 N -0.384 5.384 6 C -0.464 4.464 7 H 0.081 0.919 8 C -0.241 4.241 9 N -0.585 5.585 10 Si 0.910 3.090 11 H -0.224 1.224 12 H -0.223 1.223 13 H -0.210 1.210 14 N -0.325 5.325 15 C -0.070 4.070 16 C 0.294 3.706 17 O -0.403 6.403 18 C 0.021 3.979 19 H 0.112 0.888 20 C -0.166 4.166 21 C -0.156 4.156 22 C -0.176 4.176 23 C 0.311 3.689 24 O -0.436 6.436 25 N -0.318 5.318 26 C -0.066 4.066 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.202 0.798 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.689 -3.732 9.803 13.621 hybrid contribution -1.543 0.402 0.420 1.649 sum -10.233 -3.329 10.223 14.843 Atomic orbital electron populations 1.22051 0.94881 1.02162 1.02243 1.21458 0.93514 0.98477 0.84557 0.88240 1.20928 0.86586 0.96829 0.93479 1.42276 1.00308 1.70971 1.24866 1.20000 0.92219 1.33732 1.00413 0.91923 1.25739 0.93350 1.01763 1.03295 1.70881 1.37327 1.40589 1.09744 0.83254 0.76310 0.75231 0.74195 1.22351 1.22344 1.21042 1.47729 1.49950 1.12387 1.22422 1.21888 1.02009 0.82061 1.01082 1.20563 0.78360 0.87225 0.84497 1.90732 1.56599 1.16792 1.76138 1.21090 1.00022 0.90857 0.85948 0.88773 1.21840 0.94139 1.01859 0.98715 1.21630 1.02047 0.96998 0.94903 1.21701 0.97058 0.95847 1.02947 1.20169 0.82614 0.85316 0.80842 1.90693 1.78240 1.39809 1.34831 1.46941 1.24249 1.31125 1.29479 1.21806 0.90758 0.91915 1.02144 0.91229 0.92223 0.92559 0.95391 0.96010 0.79796 0.93445 0.91300 0.91446 0.90785 0.88575 0.89365 0.89601 0.91081 0.87847 0.88157 0.93157 0.90533 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.17 37.16 0.34 -1.47 16 2 C 0.12 1.96 2.80 -67.93 -0.19 1.77 16 3 H 0.10 1.85 6.90 -51.93 -0.36 1.49 16 4 C 0.15 2.90 5.56 -4.04 -0.02 2.88 16 5 N -0.74 -18.19 5.43 -59.91 -0.33 -18.51 16 6 C -0.33 -9.20 9.99 -15.06 -0.15 -9.35 16 7 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 8 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 9 N -0.94 -28.55 13.70 55.49 0.76 -27.79 16 10 Si 1.08 25.51 29.92 -169.99 -5.09 20.43 16 11 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.30 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.59 -8.73 2.24 -173.93 -0.39 -9.12 16 15 C 0.07 0.83 9.43 59.85 0.56 1.39 16 16 C 0.51 8.25 5.34 -10.99 -0.06 8.20 16 17 O -0.53 -10.59 14.19 5.55 0.08 -10.52 16 18 C 0.13 1.72 2.57 -69.53 -0.18 1.54 16 19 H 0.09 0.99 5.85 -51.93 -0.30 0.68 16 20 C -0.13 -1.72 5.27 -26.63 -0.14 -1.86 16 21 C -0.12 -1.24 6.04 -26.55 -0.16 -1.40 16 22 C -0.14 -1.61 6.02 -28.09 -0.17 -1.78 16 23 C 0.52 8.02 7.46 -11.87 -0.09 7.93 16 24 O -0.56 -10.32 16.30 5.55 0.09 -10.23 16 25 N -0.59 -8.60 2.95 -176.51 -0.52 -9.12 16 26 C 0.08 1.09 9.50 59.84 0.57 1.66 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.62 6.66 -51.93 -0.35 0.27 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 32 H 0.37 9.59 5.90 -40.82 -0.24 9.35 16 33 H 0.25 7.74 6.77 -40.82 -0.28 7.46 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.58 5.78 -51.93 -0.30 0.28 16 36 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 41 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.20 7.37 -51.93 -0.38 0.81 16 45 H 0.08 1.17 5.42 -51.93 -0.28 0.89 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -35.29 352.96 -6.94 -42.23 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.08 Total: 9.15 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.22 Total: 8.17 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -0.48 Total: -64.55 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.09 Total: 20.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.29 -6.94 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698855843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.403 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds