Wall clock time and date at job start Tue Mar 31 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21279 * 120.00508 * 2 1 4 4 N 1.34783 * 119.99563 * 179.97438 * 2 1 3 5 5 C 1.47422 * 125.64802 * 0.04441 * 4 2 1 6 6 C 1.54916 * 104.82787 * 204.09283 * 5 4 2 7 7 C 1.55157 * 101.58266 * 322.98725 * 6 5 4 8 8 C 1.47022 * 125.64364 * 180.02562 * 4 2 1 9 9 H 1.09003 * 109.88350 * 298.54363 * 8 4 2 10 10 C 1.50696 * 109.88600 * 59.56018 * 8 4 2 11 11 O 1.21287 * 119.99868 * 18.54477 * 10 8 4 12 12 N 1.34771 * 120.00122 * 198.54469 * 10 8 4 13 13 C 1.46505 * 120.00035 * 359.97438 * 12 10 8 14 14 C 1.46506 * 120.00092 * 179.97438 * 12 10 8 15 15 H 1.08996 * 109.46660 * 0.02562 * 14 12 10 16 16 C 1.52997 * 109.47289 * 239.99940 * 14 12 10 17 17 C 1.52999 * 109.46684 * 119.99866 * 14 12 10 18 18 N 1.46496 * 109.47535 * 305.00097 * 17 14 12 19 19 C 1.36941 * 119.99960 * 180.02562 * 18 17 14 20 20 H 1.07996 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38818 * 119.99491 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99517 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47372 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46952 * 120.00259 * 23 21 19 26 26 H 1.48493 * 109.47338 * 239.99942 * 23 21 19 27 27 H 1.09000 * 109.46992 * 270.00403 * 1 2 3 28 28 H 1.09001 * 109.46473 * 30.00191 * 1 2 3 29 29 H 1.09002 * 109.47284 * 150.00056 * 1 2 3 30 30 H 1.09002 * 110.36814 * 322.92850 * 5 4 2 31 31 H 1.08997 * 110.36974 * 85.14298 * 5 4 2 32 32 H 1.08997 * 111.00531 * 81.06733 * 6 5 4 33 33 H 1.09005 * 111.00166 * 204.88063 * 6 5 4 34 34 H 1.09004 * 110.72311 * 277.14729 * 7 6 5 35 35 H 1.08997 * 110.72038 * 153.86881 * 7 6 5 36 36 H 1.08999 * 109.46723 * 270.00200 * 13 12 10 37 37 H 1.08997 * 109.46979 * 29.99903 * 13 12 10 38 38 H 1.09005 * 109.46961 * 150.00254 * 13 12 10 39 39 H 1.09002 * 109.47153 * 179.97438 * 16 14 12 40 40 H 1.09001 * 109.46832 * 60.00146 * 16 14 12 41 41 H 1.09004 * 109.47261 * 300.00128 * 16 14 12 42 42 H 1.08998 * 109.47565 * 65.00686 * 17 14 12 43 43 H 1.09000 * 109.46738 * 185.00167 * 17 14 12 44 44 H 0.97001 * 120.00379 * 0.02562 * 18 17 14 45 45 H 0.96999 * 119.99982 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.5729 -2.5103 0.0002 6 6 2.6544 -3.4353 0.6123 7 6 3.9548 -2.8234 0.0276 8 6 3.6439 -1.3120 0.0011 9 1 4.0614 -0.8613 -0.8993 10 6 4.2242 -0.6477 1.2230 11 8 3.5142 -0.4040 2.1756 12 7 5.5321 -0.3245 1.2572 13 6 6.3899 -0.6194 0.1067 14 6 6.0962 0.3219 2.4448 15 1 5.3129 0.4588 3.1903 16 6 6.6761 1.6836 2.0575 17 6 7.2047 -0.5579 3.0262 18 7 6.6775 -1.8998 3.2862 19 6 7.4933 -2.8660 3.8117 20 1 8.5254 -2.6390 4.0341 21 6 6.9937 -4.1376 4.0576 22 7 5.7363 -4.4148 3.7851 23 14 8.1068 -5.4559 4.7738 24 1 9.4649 -4.8945 4.9877 25 1 7.5533 -5.9196 6.0715 26 1 8.1868 -6.6013 3.8322 27 1 -0.3633 0.0001 1.0277 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.6732 -2.5197 0.6156 31 1 1.3383 -2.8203 -1.0181 32 1 2.6493 -3.3753 1.7006 33 1 2.5221 -4.4647 0.2792 34 1 4.1380 -3.1974 -0.9798 35 1 4.8048 -3.0308 0.6776 36 1 6.8200 -1.6145 0.2199 37 1 5.7975 -0.5815 -0.8074 38 1 7.1905 0.1184 0.0518 39 1 7.0953 2.1647 2.9412 40 1 5.8863 2.3104 1.6433 41 1 7.4595 1.5462 1.3120 42 1 8.0280 -0.6226 2.3148 43 1 7.5635 -0.1216 3.9584 44 1 5.7505 -2.1039 3.0861 45 1 5.3872 -5.3033 3.9573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698864335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:06 Heat of formation + Delta-G solvation = -72.956430 kcal Electronic energy + Delta-G solvation = -26217.602408 eV Core-core repulsion = 22655.808040 eV Total energy + Delta-G solvation = -3561.794368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85976 -40.19348 -38.37280 -37.56217 -35.84346 -33.81622 -32.93325 -31.93389 -30.79605 -29.51423 -27.85255 -27.36967 -25.11081 -24.44964 -23.24563 -22.03614 -20.69557 -19.70350 -19.08014 -18.60240 -18.07900 -17.52091 -16.76152 -16.37195 -16.28544 -16.10525 -15.51485 -15.29664 -15.10253 -14.67869 -14.52210 -14.12683 -14.01289 -13.79618 -13.70234 -13.63800 -13.30483 -13.27546 -13.08573 -13.04603 -12.99247 -12.81071 -12.54943 -12.25883 -12.11194 -12.08838 -11.99772 -11.82293 -11.72907 -11.00067 -10.98717 -10.81401 -9.67542 -9.57383 -8.98147 -7.90769 -5.20855 1.46503 1.48118 1.51403 1.57563 1.67357 1.93524 2.22626 2.56300 3.39023 3.41132 3.55788 3.62284 3.84070 3.89498 3.97083 4.07190 4.18759 4.26647 4.33110 4.42823 4.44276 4.47439 4.59959 4.66633 4.69097 4.73542 4.80162 4.81335 4.86355 4.92856 4.96285 5.01310 5.07752 5.11245 5.23463 5.25387 5.32633 5.49704 5.66125 6.28297 6.42285 6.53343 7.11229 7.26236 7.35201 8.08974 8.35032 9.31782 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015887 B = 0.005484 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.069021 B = 5104.203694 C = 6259.317443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.516 3.484 3 O -0.597 6.597 4 N -0.605 5.605 5 C 0.103 3.897 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.121 3.879 9 H 0.110 0.890 10 C 0.505 3.495 11 O -0.584 6.584 12 N -0.598 5.598 13 C 0.075 3.925 14 C 0.130 3.870 15 H 0.057 0.943 16 C -0.142 4.142 17 C 0.146 3.854 18 N -0.739 5.739 19 C -0.246 4.246 20 H 0.075 0.925 21 C -0.069 4.069 22 N -0.961 5.961 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.299 1.299 26 H -0.289 1.289 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.038 0.962 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.026 0.974 44 H 0.372 0.628 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 4.606 -14.823 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.308 3.692 3 O -0.478 6.478 4 N -0.339 5.339 5 C -0.018 4.018 6 C -0.167 4.167 7 C -0.150 4.150 8 C 0.013 3.987 9 H 0.128 0.872 10 C 0.293 3.707 11 O -0.464 6.464 12 N -0.330 5.330 13 C -0.067 4.067 14 C 0.026 3.974 15 H 0.075 0.925 16 C -0.200 4.200 17 C 0.019 3.981 18 N -0.382 5.382 19 C -0.378 4.378 20 H 0.093 0.907 21 C -0.262 4.262 22 N -0.611 5.611 23 Si 0.801 3.199 24 H -0.193 1.193 25 H -0.226 1.226 26 H -0.216 1.216 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.057 0.943 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.204 0.796 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.712 5.311 -14.274 16.643 hybrid contribution 0.391 -0.788 1.100 1.408 sum -6.321 4.523 -13.174 15.296 Atomic orbital electron populations 1.21885 0.87407 1.06704 1.05590 1.21437 0.92305 0.81409 0.74050 1.90667 1.72120 1.32602 1.52384 1.48594 1.05239 1.07580 1.72502 1.22662 0.96682 0.79209 1.03206 1.22729 0.93652 1.00758 0.99546 1.22581 0.99130 0.89279 1.04042 1.21651 0.83087 0.98462 0.95482 0.87229 1.21367 0.82114 0.77588 0.89611 1.90611 1.60593 1.55956 1.39231 1.47758 1.08396 1.59464 1.17406 1.21986 0.95533 1.02021 0.87136 1.21206 0.95530 0.93362 0.87296 0.92501 1.21955 1.01194 0.93689 1.03175 1.21144 0.94675 0.85191 0.97137 1.42477 1.11438 1.07677 1.76615 1.19639 0.93797 0.91159 1.33211 0.90718 1.25510 0.97615 0.99735 1.03325 1.69861 1.14730 1.20911 1.55585 0.85104 0.78374 0.79280 0.77119 1.19267 1.22622 1.21608 0.88535 0.88097 0.86744 0.89042 0.86685 0.94342 0.86707 0.85812 0.92151 0.92892 0.89347 0.88941 0.90024 0.92965 0.89937 0.94315 0.95584 0.79644 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.67 71.24 0.69 -2.29 16 2 C 0.52 16.05 7.30 87.66 0.64 16.69 16 3 O -0.60 -24.39 16.73 -3.03 -0.05 -24.44 16 4 N -0.61 -17.37 2.79 -792.16 -2.21 -19.58 16 5 C 0.10 2.08 6.27 86.86 0.54 2.62 16 6 C -0.13 -3.40 7.08 31.99 0.23 -3.17 16 7 C -0.11 -3.14 6.26 31.78 0.20 -2.94 16 8 C 0.12 3.76 2.51 44.60 0.11 3.87 16 9 H 0.11 2.95 6.36 -2.39 -0.02 2.94 16 10 C 0.51 20.67 5.74 87.66 0.50 21.18 16 11 O -0.58 -29.53 15.30 -3.05 -0.05 -29.58 16 12 N -0.60 -21.93 2.24 -822.58 -1.85 -23.78 16 13 C 0.08 2.06 9.24 127.77 1.18 3.24 16 14 C 0.13 4.98 2.80 44.99 0.13 5.10 16 15 H 0.06 2.64 6.90 -2.39 -0.02 2.62 16 16 C -0.14 -4.02 9.17 71.98 0.66 -3.36 16 17 C 0.15 6.13 5.55 86.38 0.48 6.61 16 18 N -0.74 -39.22 5.43 -343.46 -1.87 -41.09 16 19 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 22 N -0.96 -58.67 13.06 21.65 0.28 -58.39 16 23 Si 0.97 46.17 29.55 68.60 2.03 48.19 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.11 1.31 7.18 -2.39 -0.02 1.29 16 30 H 0.09 1.60 7.55 -2.39 -0.02 1.58 16 31 H 0.12 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.06 2.26 7.82 -2.39 -0.02 2.24 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.94 5.96 -2.39 -0.01 1.93 16 38 H 0.09 2.08 6.43 -2.38 -0.02 2.07 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.92 6.66 -2.38 -0.02 1.91 16 42 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.37 21.71 7.06 -92.71 -0.65 21.06 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -84.56 360.82 3.29 -81.27 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.33 Total: 36.43 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 6.67 Total: 30.95 kcal Atomic # 7 Polarization: -137.19 SS G_CDS: -5.64 Total: -142.83 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.10 Total: -54.02 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -84.56 3.29 -81.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698864335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.314 kcal (2) G-P(sol) polarization free energy of solvation -84.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds