Wall clock time and date at job start Tue Mar 31 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46668 * 2 1 4 4 C 1.52996 * 109.47132 * 240.00573 * 2 1 3 5 5 N 1.46899 * 109.47321 * 184.99709 * 4 2 1 6 6 C 1.46899 * 111.00123 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47138 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99866 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99665 * 180.02562 * 7 6 5 10 10 C 1.37103 * 119.99433 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00015 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99642 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00204 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47041 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47254 * 119.99636 * 14 12 10 17 17 H 1.48497 * 109.46716 * 240.00078 * 14 12 10 18 18 N 1.46492 * 109.47265 * 120.00201 * 2 1 3 19 19 C 1.34782 * 120.00416 * 274.99957 * 18 2 1 20 20 O 1.21285 * 119.99747 * 0.02562 * 19 18 2 21 21 C 1.50699 * 120.00318 * 180.02562 * 19 18 2 22 22 H 1.09000 * 109.46995 * 300.00347 * 21 19 18 23 23 C 1.52999 * 109.46873 * 60.00124 * 21 19 18 24 24 C 1.52998 * 109.46861 * 179.97438 * 21 19 18 25 25 C 1.53000 * 117.49463 * 111.38053 * 24 21 19 26 26 C 1.52997 * 60.00347 * 107.48750 * 25 24 21 27 27 H 1.09000 * 109.47798 * 59.99456 * 1 2 3 28 28 H 1.09007 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47295 * 299.98986 * 1 2 3 30 30 H 1.09004 * 109.46832 * 304.99779 * 4 2 1 31 31 H 1.09005 * 109.47575 * 64.99237 * 4 2 1 32 32 H 1.00897 * 111.00020 * 56.04780 * 5 4 2 33 33 H 1.08997 * 109.47424 * 300.00376 * 6 5 4 34 34 H 1.09002 * 109.47042 * 59.99646 * 6 5 4 35 35 H 0.96993 * 119.99972 * 0.02562 * 9 7 6 36 36 H 0.97000 * 119.99769 * 180.02562 * 13 12 10 37 37 H 0.97003 * 119.99930 * 95.00156 * 18 2 1 38 38 H 1.09004 * 109.46979 * 299.99433 * 23 21 19 39 39 H 1.08993 * 109.47403 * 60.00058 * 23 21 19 40 40 H 1.09000 * 109.46771 * 180.02562 * 23 21 19 41 41 H 1.08990 * 115.56470 * 325.69103 * 24 21 19 42 42 H 1.09002 * 117.49696 * 214.97963 * 25 24 21 43 43 H 1.09002 * 117.50343 * 359.97438 * 25 24 21 44 44 H 1.08999 * 117.49685 * 252.51237 * 26 25 24 45 45 H 1.08997 * 117.50044 * 107.48590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5040 -0.8265 -1.1905 6 6 4.0302 -1.5156 -2.3763 7 6 5.5316 -1.6040 -2.2810 8 8 6.1066 -1.1391 -1.3196 9 7 6.2354 -2.1997 -3.2641 10 6 7.6012 -2.2805 -3.1771 11 1 8.1131 -1.8673 -2.3206 12 6 8.3268 -2.8941 -4.1909 13 7 7.7038 -3.3974 -5.2328 14 14 10.1877 -3.0050 -4.0720 15 1 10.6420 -2.3679 -2.8098 16 1 10.6004 -4.4314 -4.0834 17 1 10.8002 -2.3032 -5.2285 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8582 1.1583 2.4118 21 6 2.6500 -0.7287 3.5874 22 1 1.9779 -1.5510 3.8324 23 6 4.0527 -1.2785 3.3212 24 6 2.7020 0.2546 4.7585 25 6 1.7083 0.0435 5.9026 26 6 3.1900 -0.2783 6.1072 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.6053 -1.7197 -1.2952 31 1 1.7515 -0.1582 -2.1370 32 1 3.7996 -1.2883 -0.3435 33 1 3.6094 -2.5196 -2.4298 34 1 3.7555 -0.9585 -3.2721 35 1 5.7755 -2.5711 -4.0331 36 1 8.2104 -3.8260 -5.9403 37 1 2.2491 -1.6318 1.1525 38 1 4.0161 -1.9789 2.4867 39 1 4.7249 -0.4562 3.0761 40 1 4.4163 -1.7927 4.2108 41 1 2.9607 1.2812 4.4995 42 1 1.3133 0.9314 6.3963 43 1 1.0173 -0.7955 5.8208 44 1 3.4741 -1.3293 6.1600 45 1 3.7699 0.3978 6.7354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699355833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:25 Heat of formation + Delta-G solvation = -61.191708 kcal Electronic energy + Delta-G solvation = -23992.395470 eV Core-core repulsion = 20431.111259 eV Total energy + Delta-G solvation = -3561.284211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21538 -38.39295 -37.68152 -36.48186 -34.27269 -33.67379 -32.65223 -31.23491 -30.43431 -27.61328 -25.31881 -24.98280 -23.33263 -22.47566 -22.21028 -20.64831 -19.82571 -19.25501 -17.95063 -17.55504 -16.50003 -16.15307 -15.42656 -15.34247 -15.17775 -14.60396 -14.51029 -14.27985 -13.91537 -13.86704 -13.52761 -13.08718 -13.07373 -12.67750 -12.54404 -12.33053 -12.08165 -11.92187 -11.73594 -11.63538 -11.62463 -11.47415 -11.11547 -11.07419 -10.96662 -10.53770 -10.35633 -10.24216 -10.18651 -9.69103 -9.53797 -9.13124 -8.48862 -8.10517 -7.97969 -6.43687 -3.84461 2.65401 3.06486 3.15070 3.25872 3.33161 3.65335 3.88334 4.03735 4.26425 4.40865 4.53924 4.70607 4.82526 4.89423 4.99852 5.07241 5.17481 5.18517 5.23988 5.28217 5.30403 5.42261 5.43028 5.55931 5.61739 5.62368 5.66486 5.74827 5.78447 5.91337 5.92881 5.96950 6.07904 6.08524 6.18475 6.23941 6.46782 7.13490 7.44375 7.53752 7.58738 8.04597 8.22310 8.59193 9.16166 9.52246 10.03541 10.74116 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.002958 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.918854 B = 9463.108737 C =10797.033823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.097 0.903 4 C 0.050 3.950 5 N -0.666 5.666 6 C 0.049 3.951 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.723 5.723 19 C 0.525 3.475 20 O -0.538 6.538 21 C -0.080 4.080 22 H 0.093 0.907 23 C -0.143 4.143 24 C -0.132 4.132 25 C -0.180 4.180 26 C -0.178 4.178 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.347 0.653 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.396 0.604 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.024 0.880 13.917 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.115 0.885 4 C -0.080 4.080 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.375 5.375 19 C 0.312 3.688 20 O -0.414 6.414 21 C -0.101 4.101 22 H 0.111 0.889 23 C -0.200 4.200 24 C -0.151 4.151 25 C -0.217 4.217 26 C -0.215 4.215 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.167 0.833 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.647 2.584 14.164 20.539 hybrid contribution 0.447 -1.789 -0.509 1.913 sum -14.201 0.796 13.655 19.717 Atomic orbital electron populations 1.22146 0.95148 1.01973 1.02699 1.21020 0.93328 0.98522 0.83219 0.88479 1.22306 0.88830 0.98937 0.97891 1.60016 1.07494 1.57495 1.04932 1.21699 0.95178 0.96928 0.94511 1.19798 0.88057 0.84273 0.85335 1.90530 1.71103 1.51419 1.33522 1.41872 1.07435 1.50879 1.19868 1.19754 0.81497 1.35012 1.06531 0.87865 1.25267 1.00711 0.96795 0.95206 1.69621 1.36623 1.38685 1.09409 0.85802 0.82221 0.77869 0.78481 1.19189 1.20768 1.20726 1.46025 1.67752 1.13862 1.09870 1.20463 0.76826 0.87206 0.84334 1.90675 1.49776 1.15976 1.84954 1.20872 0.99105 0.97773 0.92376 0.88875 1.21763 0.94337 1.01667 1.02275 1.22043 1.04509 1.00413 0.88098 1.22999 0.92546 1.03186 1.02922 1.22973 0.97080 1.02009 0.99474 0.91439 0.92626 0.91949 0.95053 0.89504 0.83282 0.93887 0.89469 0.77477 0.91919 0.76960 0.91886 0.91316 0.91438 0.86561 0.88872 0.89048 0.88720 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.14 1.63 2.88 -67.94 -0.20 1.44 16 3 H 0.10 1.37 7.58 -51.93 -0.39 0.98 16 4 C 0.05 0.58 5.30 -3.83 -0.02 0.56 16 5 N -0.67 -10.39 6.12 -115.06 -0.70 -11.09 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.24 7.82 -10.98 -0.09 10.16 16 8 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 N -0.72 -7.85 4.25 -53.81 -0.23 -8.07 16 19 C 0.53 6.59 7.12 -10.98 -0.08 6.51 16 20 O -0.54 -8.70 15.31 5.55 0.09 -8.62 16 21 C -0.08 -0.79 2.88 -91.77 -0.26 -1.05 16 22 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 23 C -0.14 -1.41 8.93 37.16 0.33 -1.07 16 24 C -0.13 -1.36 4.76 -90.62 -0.43 -1.79 16 25 C -0.18 -1.55 10.18 -26.73 -0.27 -1.82 16 26 C -0.18 -1.47 9.73 -26.73 -0.26 -1.73 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.35 5.50 7.28 -39.29 -0.29 5.22 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.40 3.54 7.57 -40.82 -0.31 3.23 16 38 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.56 7.29 -51.93 -0.38 0.19 16 41 H 0.12 1.44 7.47 -51.93 -0.39 1.05 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 44 H 0.09 0.69 7.61 -51.93 -0.40 0.30 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -32.85 374.18 -8.10 -40.96 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -7.43 Total: 15.76 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.19 Total: 2.91 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.27 Total: -57.01 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.17 Total: -24.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.85 -8.10 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699355833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.236 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds