Wall clock time and date at job start Tue Mar 31 2020 03:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46668 * 2 1 4 4 C 1.52996 * 109.47132 * 240.00573 * 2 1 3 5 5 N 1.46899 * 109.47321 * 184.99709 * 4 2 1 6 6 C 1.46899 * 111.00123 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47138 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99866 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99665 * 180.02562 * 7 6 5 10 10 C 1.37103 * 119.99433 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00015 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99642 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00204 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47041 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47254 * 119.99636 * 14 12 10 17 17 H 1.48497 * 109.46716 * 240.00078 * 14 12 10 18 18 N 1.46492 * 109.47265 * 120.00201 * 2 1 3 19 19 C 1.34782 * 120.00416 * 274.99957 * 18 2 1 20 20 O 1.21285 * 119.99747 * 0.02562 * 19 18 2 21 21 C 1.50699 * 120.00318 * 180.02562 * 19 18 2 22 22 H 1.09000 * 109.46995 * 300.00347 * 21 19 18 23 23 C 1.52999 * 109.46873 * 60.00124 * 21 19 18 24 24 C 1.52998 * 109.46861 * 179.97438 * 21 19 18 25 25 C 1.53000 * 117.49463 * 111.38053 * 24 21 19 26 26 C 1.52997 * 60.00347 * 107.48750 * 25 24 21 27 27 H 1.09000 * 109.47798 * 59.99456 * 1 2 3 28 28 H 1.09007 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47295 * 299.98986 * 1 2 3 30 30 H 1.09004 * 109.46832 * 304.99779 * 4 2 1 31 31 H 1.09005 * 109.47575 * 64.99237 * 4 2 1 32 32 H 1.00897 * 111.00020 * 56.04780 * 5 4 2 33 33 H 1.08997 * 109.47424 * 300.00376 * 6 5 4 34 34 H 1.09002 * 109.47042 * 59.99646 * 6 5 4 35 35 H 0.96993 * 119.99972 * 0.02562 * 9 7 6 36 36 H 0.97000 * 119.99769 * 180.02562 * 13 12 10 37 37 H 0.97003 * 119.99930 * 95.00156 * 18 2 1 38 38 H 1.09004 * 109.46979 * 299.99433 * 23 21 19 39 39 H 1.08993 * 109.47403 * 60.00058 * 23 21 19 40 40 H 1.09000 * 109.46771 * 180.02562 * 23 21 19 41 41 H 1.08990 * 115.56470 * 325.69103 * 24 21 19 42 42 H 1.09002 * 117.49696 * 214.97963 * 25 24 21 43 43 H 1.09002 * 117.50343 * 359.97438 * 25 24 21 44 44 H 1.08999 * 117.49685 * 252.51237 * 26 25 24 45 45 H 1.08997 * 117.50044 * 107.48590 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5040 -0.8265 -1.1905 6 6 4.0302 -1.5156 -2.3763 7 6 5.5316 -1.6040 -2.2810 8 8 6.1066 -1.1391 -1.3196 9 7 6.2354 -2.1997 -3.2641 10 6 7.6012 -2.2805 -3.1771 11 1 8.1131 -1.8673 -2.3206 12 6 8.3268 -2.8941 -4.1909 13 7 7.7038 -3.3974 -5.2328 14 14 10.1877 -3.0050 -4.0720 15 1 10.6420 -2.3679 -2.8098 16 1 10.6004 -4.4314 -4.0834 17 1 10.8002 -2.3032 -5.2285 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0183 2.3571 20 8 1.8582 1.1583 2.4118 21 6 2.6500 -0.7287 3.5874 22 1 1.9779 -1.5510 3.8324 23 6 4.0527 -1.2785 3.3212 24 6 2.7020 0.2546 4.7585 25 6 1.7083 0.0435 5.9026 26 6 3.1900 -0.2783 6.1072 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.6053 -1.7197 -1.2952 31 1 1.7515 -0.1582 -2.1370 32 1 3.7996 -1.2883 -0.3435 33 1 3.6094 -2.5196 -2.4298 34 1 3.7555 -0.9585 -3.2721 35 1 5.7755 -2.5711 -4.0331 36 1 8.2104 -3.8260 -5.9403 37 1 2.2491 -1.6318 1.1525 38 1 4.0161 -1.9789 2.4867 39 1 4.7249 -0.4562 3.0761 40 1 4.4163 -1.7927 4.2108 41 1 2.9607 1.2812 4.4995 42 1 1.3133 0.9314 6.3963 43 1 1.0173 -0.7955 5.8208 44 1 3.4741 -1.3293 6.1600 45 1 3.7699 0.3978 6.7354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699355833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:24 Heat of formation + Delta-G solvation = -85.429874 kcal Electronic energy + Delta-G solvation = -23993.446515 eV Core-core repulsion = 20431.111259 eV Total energy + Delta-G solvation = -3562.335257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17425 -40.14202 -38.57753 -37.56636 -36.02139 -35.09262 -33.55110 -33.23137 -31.33019 -28.97244 -26.72440 -26.06596 -24.67484 -23.20151 -23.04628 -21.58757 -21.10725 -20.61385 -19.90661 -18.58297 -17.74909 -17.41677 -16.88554 -16.42172 -16.23391 -16.06361 -15.93862 -15.38050 -15.32049 -14.98553 -14.79184 -14.32636 -14.04118 -13.91010 -13.56097 -13.39771 -13.17254 -13.08222 -13.03179 -12.88388 -12.79859 -12.63950 -12.40156 -12.28939 -12.11778 -11.96039 -11.85860 -11.51228 -11.27459 -10.92331 -10.66818 -10.36160 -10.06508 -10.01014 -9.32028 -8.46895 -5.95245 1.36466 1.42111 1.55983 1.67878 2.05790 2.19172 2.29196 2.88885 2.94412 3.20764 3.50103 3.66124 3.71252 3.88153 4.00937 4.13371 4.20065 4.27607 4.32586 4.37498 4.48683 4.50770 4.52282 4.59857 4.67596 4.75337 4.77737 4.79847 4.85835 4.95548 5.04087 5.11757 5.26387 5.27157 5.29542 5.36567 5.41426 5.56614 5.87290 6.09295 6.38440 6.55766 6.60567 7.13221 7.29131 7.56924 8.12444 8.70680 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.002958 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.918854 B = 9463.108737 C =10797.033823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.062 0.938 4 C 0.057 3.943 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.332 4.332 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.274 1.274 16 H -0.269 1.269 17 H -0.272 1.272 18 N -0.714 5.714 19 C 0.518 3.482 20 O -0.582 6.582 21 C -0.070 4.070 22 H 0.122 0.878 23 C -0.139 4.139 24 C -0.156 4.156 25 C -0.174 4.174 26 C -0.165 4.165 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.343 0.657 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.408 0.592 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.048 -0.947 13.861 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.072 4.072 5 N -0.321 5.321 6 C -0.068 4.068 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.210 5.210 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.194 1.194 17 H -0.198 1.198 18 N -0.366 5.366 19 C 0.306 3.694 20 O -0.462 6.462 21 C -0.091 4.091 22 H 0.140 0.860 23 C -0.197 4.197 24 C -0.175 4.175 25 C -0.211 4.211 26 C -0.202 4.202 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.701 0.724 14.078 21.101 hybrid contribution 0.733 -1.172 -0.478 1.463 sum -14.968 -0.448 13.600 20.229 Atomic orbital electron populations 1.22050 0.93165 1.03168 1.02561 1.20964 0.94744 0.96794 0.83505 0.91965 1.22355 0.86202 1.00570 0.98100 1.59983 1.10255 1.57632 1.04205 1.21557 0.90216 0.99174 0.95805 1.20933 0.90725 0.82126 0.83829 1.90502 1.72851 1.52656 1.34977 1.41932 1.06834 1.51643 1.20634 1.19677 0.83114 1.36747 1.06613 0.90470 1.26013 1.04793 0.95883 0.94542 1.69672 1.38165 1.38583 1.09685 0.84897 0.77045 0.78338 0.78231 1.19880 1.19443 1.19754 1.45988 1.66965 1.14341 1.09352 1.21019 0.76138 0.86823 0.85429 1.90653 1.51847 1.17961 1.85724 1.20857 0.99374 0.98038 0.90852 0.86048 1.21748 0.93810 1.00777 1.03361 1.21947 1.07034 0.99224 0.89303 1.23092 0.92989 1.03680 1.01360 1.23059 0.96878 1.02839 0.97410 0.90080 0.90651 0.93632 0.92163 0.88447 0.83724 0.90856 0.87718 0.76917 0.91307 0.75577 0.91408 0.94176 0.89499 0.89736 0.88956 0.87553 0.87100 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.14 3.16 2.88 44.99 0.13 3.29 16 3 H 0.06 1.82 7.58 -2.38 -0.02 1.80 16 4 C 0.06 1.16 5.30 86.30 0.46 1.61 16 5 N -0.69 -20.50 6.12 -517.93 -3.17 -23.67 16 6 C 0.06 2.08 6.17 85.56 0.53 2.61 16 7 C 0.44 20.31 7.82 87.66 0.69 21.00 16 8 O -0.62 -34.27 15.78 -3.06 -0.05 -34.32 16 9 N -0.57 -28.90 5.29 -306.98 -1.62 -30.52 16 10 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 14 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 N -0.71 -14.97 4.25 -442.54 -1.88 -16.85 16 19 C 0.52 13.17 7.12 87.66 0.62 13.79 16 20 O -0.58 -19.84 15.31 -3.04 -0.05 -19.89 16 21 C -0.07 -1.34 2.88 -11.54 -0.03 -1.37 16 22 H 0.12 1.63 7.90 -2.39 -0.02 1.61 16 23 C -0.14 -2.67 8.93 71.98 0.64 -2.03 16 24 C -0.16 -3.23 4.76 -10.79 -0.05 -3.28 16 25 C -0.17 -2.80 10.18 30.59 0.31 -2.49 16 26 C -0.17 -2.51 9.73 30.60 0.30 -2.21 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.34 10.59 7.28 -89.70 -0.65 9.94 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 35 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 36 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.41 6.59 7.57 -92.71 -0.70 5.88 16 38 H 0.07 1.21 7.57 -2.38 -0.02 1.19 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.31 7.29 -2.39 -0.02 1.29 16 41 H 0.08 2.28 7.47 -2.39 -0.02 2.26 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 1.39 8.05 -2.39 -0.02 1.37 16 44 H 0.11 1.33 7.61 -2.39 -0.02 1.32 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.53 374.18 0.02 -73.52 By element: Atomic # 1 Polarization: 45.96 SS G_CDS: -1.08 Total: 44.88 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.55 Total: 10.95 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -6.39 Total: -119.85 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.09 Total: -54.21 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.53 0.02 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699355833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.914 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds