Wall clock time and date at job start Tue Mar 31 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00079 * 2 1 4 4 N 1.34780 * 120.00011 * 179.97438 * 2 1 3 5 5 C 1.48143 * 127.83846 * 359.97315 * 4 2 1 6 6 C 1.54386 * 104.61873 * 140.41936 * 5 4 2 7 7 C 1.54287 * 104.95819 * 23.86406 * 6 5 4 8 8 C 1.53001 * 110.34402 * 241.02361 * 7 6 5 9 9 C 1.50703 * 110.33901 * 118.87482 * 7 6 5 10 10 O 1.21271 * 120.00185 * 0.02562 * 9 7 6 11 11 N 1.34776 * 119.99577 * 179.97438 * 9 7 6 12 12 C 1.46499 * 119.99869 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47242 * 35.00655 * 12 11 9 14 14 C 1.52998 * 109.47381 * 275.00511 * 12 11 9 15 15 C 1.53001 * 109.47128 * 155.00256 * 12 11 9 16 16 N 1.46490 * 109.47264 * 305.00135 * 15 12 11 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.48141 * 127.83560 * 179.97438 * 4 2 1 26 26 H 1.09009 * 109.46958 * 239.99997 * 1 2 3 27 27 H 1.08992 * 109.47431 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46924 * 120.00398 * 1 2 3 29 29 H 1.08995 * 110.40781 * 21.62993 * 5 4 2 30 30 H 1.09000 * 110.40694 * 259.20160 * 5 4 2 31 31 H 1.09001 * 110.33895 * 265.00127 * 6 5 4 32 32 H 1.08991 * 110.43525 * 142.78245 * 6 5 4 33 33 H 1.08993 * 109.47594 * 298.53138 * 8 7 6 34 34 H 1.09004 * 109.46905 * 58.52843 * 8 7 6 35 35 H 1.08994 * 109.47511 * 178.52462 * 8 7 6 36 36 H 0.97002 * 120.00373 * 0.02562 * 11 9 7 37 37 H 1.09005 * 109.47168 * 59.99843 * 14 12 11 38 38 H 1.09000 * 109.47193 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.47450 * 300.00005 * 14 12 11 40 40 H 1.09003 * 109.46836 * 184.99842 * 15 12 11 41 41 H 1.08999 * 109.47071 * 65.00881 * 15 12 11 42 42 H 0.97000 * 120.00577 * 0.02562 * 16 15 12 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.08998 * 110.41132 * 100.79975 * 25 4 2 45 45 H 1.08993 * 110.40983 * 338.36498 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.6221 -2.5392 0.0017 6 6 2.5410 -3.3350 -0.9500 7 6 3.8772 -2.5635 -0.9510 8 6 4.2043 -2.0683 -2.3612 9 6 4.9885 -3.4401 -0.4337 10 8 4.7529 -4.5794 -0.0915 11 7 6.2445 -2.9580 -0.3522 12 6 7.3248 -3.8099 0.1513 13 1 7.1530 -4.8390 -0.1640 14 6 7.3568 -3.7433 1.6795 15 6 8.6623 -3.3216 -0.4087 16 7 8.5907 -3.2721 -1.8710 17 6 9.6772 -2.8612 -2.5962 18 1 10.5870 -2.5741 -2.0901 19 6 9.6092 -2.8138 -3.9819 20 7 8.5002 -3.1633 -4.5987 21 14 11.0915 -2.2540 -4.9712 22 1 10.7635 -2.2921 -6.4190 23 1 11.4510 -0.8667 -4.5819 24 1 12.2382 -3.1574 -4.6990 25 6 3.6485 -1.3692 0.0001 26 1 -0.3633 -0.5139 0.8901 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 0.5991 -2.5333 -0.3745 30 1 1.6564 -2.9627 1.0055 31 1 2.1169 -3.3594 -1.9538 32 1 2.6889 -4.3484 -0.5771 33 1 4.3112 -2.9219 -3.0305 34 1 3.3983 -1.4264 -2.7169 35 1 5.1364 -1.5036 -2.3409 36 1 6.4330 -2.0468 -0.6262 37 1 6.4039 -4.0911 2.0784 38 1 8.1603 -4.3774 2.0540 39 1 7.5287 -2.7141 1.9948 40 1 9.4545 -4.0068 -0.1066 41 1 8.8764 -2.3255 -0.0214 42 1 7.7735 -3.5297 -2.3256 43 1 7.7306 -3.4544 -4.0849 44 1 3.9994 -1.6100 1.0036 45 1 4.1543 -0.4806 -0.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699384816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:08 Heat of formation + Delta-G solvation = -64.964876 kcal Electronic energy + Delta-G solvation = -25191.355461 eV Core-core repulsion = 21629.907633 eV Total energy + Delta-G solvation = -3561.447828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83477 -39.40401 -37.51981 -36.20670 -33.99714 -33.33520 -31.34661 -30.16820 -29.97403 -29.38265 -26.48905 -25.44715 -23.93818 -23.04033 -22.48389 -20.54368 -19.62065 -19.36974 -17.53225 -17.25115 -17.02531 -16.07977 -15.76601 -15.57404 -14.92674 -14.78608 -14.23184 -14.09650 -13.84368 -13.76002 -13.50502 -13.22620 -12.91913 -12.64858 -12.63783 -12.53350 -12.44878 -12.31823 -12.16050 -12.04626 -11.59273 -11.42163 -11.11430 -10.93082 -10.76627 -10.65647 -10.56144 -10.13954 -10.01109 -9.58206 -9.23106 -8.99279 -8.95459 -8.83012 -7.06728 -6.14150 -3.14973 2.39747 2.62112 2.79763 3.34701 3.49946 3.53186 3.70663 4.12305 4.32689 4.55409 4.62600 4.64844 4.84224 4.93787 5.00575 5.05754 5.07367 5.17275 5.26871 5.36181 5.47447 5.49717 5.50248 5.54626 5.59394 5.68789 5.76319 5.77794 5.91005 5.92439 5.97686 6.03703 6.09431 6.23253 6.27521 6.37142 6.58485 6.81737 7.30470 7.71193 7.76320 7.91870 8.36819 8.71763 9.17218 10.03919 10.18467 11.33705 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.003866 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.213766 B = 7240.369860 C = 7987.055245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.531 3.469 3 O -0.546 6.546 4 N -0.623 5.623 5 C 0.102 3.898 6 C -0.124 4.124 7 C -0.094 4.094 8 C -0.136 4.136 9 C 0.529 3.471 10 O -0.543 6.543 11 N -0.708 5.708 12 C 0.131 3.869 13 H 0.086 0.914 14 C -0.157 4.157 15 C 0.150 3.850 16 N -0.742 5.742 17 C -0.335 4.335 18 H 0.065 0.935 19 C -0.043 4.043 20 N -0.941 5.941 21 Si 1.080 2.920 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.118 3.882 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.404 0.596 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.369 0.631 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 1.656 11.238 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.321 3.679 3 O -0.423 6.423 4 N -0.358 5.358 5 C -0.021 4.021 6 C -0.162 4.162 7 C -0.098 4.098 8 C -0.193 4.193 9 C 0.314 3.686 10 O -0.421 6.421 11 N -0.358 5.358 12 C 0.026 3.974 13 H 0.104 0.896 14 C -0.216 4.216 15 C 0.022 3.978 16 N -0.388 5.388 17 C -0.466 4.466 18 H 0.083 0.917 19 C -0.240 4.240 20 N -0.586 5.586 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.223 1.223 25 C -0.005 4.005 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.239 0.761 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.202 0.798 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.104 1.862 10.057 18.241 hybrid contribution -0.579 -0.040 1.321 1.442 sum -15.683 1.822 11.377 19.461 Atomic orbital electron populations 1.21888 0.91247 1.05441 1.04217 1.20478 0.90306 0.81712 0.75448 1.90748 1.70811 1.30529 1.50210 1.49030 1.07413 1.05955 1.73384 1.22483 0.98212 0.81085 1.00339 1.22654 0.92244 1.00713 1.00635 1.21702 0.94927 0.95422 0.97780 1.21851 1.02511 1.02009 0.92956 1.20112 0.83582 0.87495 0.77396 1.90639 1.82915 1.18838 1.49688 1.46028 1.07368 1.17322 1.65075 1.21293 0.87033 0.95724 0.93313 0.89557 1.22091 1.02124 1.02015 0.95328 1.20917 0.92726 0.98130 0.86057 1.42341 1.14951 1.81610 0.99936 1.20018 0.93127 1.41835 0.91624 0.91746 1.25774 1.03665 1.00851 0.93750 1.70897 1.03047 1.47330 1.37309 0.83243 0.73813 0.75601 0.76283 1.21024 1.22249 1.22275 1.22293 0.81706 0.97605 0.98898 0.89458 0.88885 0.89336 0.89876 0.90660 0.90124 0.87674 0.91177 0.91615 0.91292 0.76073 0.92427 0.91573 0.92497 0.94793 0.95681 0.79765 0.93481 0.90781 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.30 36.01 0.33 -0.82 16 2 C 0.53 6.16 8.02 -10.98 -0.09 6.07 16 3 O -0.55 -8.82 17.35 5.56 0.10 -8.72 16 4 N -0.62 -6.63 3.32 -169.32 -0.56 -7.19 16 5 C 0.10 0.83 6.92 -2.41 -0.02 0.81 16 6 C -0.12 -1.27 6.24 -25.33 -0.16 -1.43 16 7 C -0.09 -1.15 0.87 -154.26 -0.13 -1.29 16 8 C -0.14 -1.78 8.13 37.16 0.30 -1.48 16 9 C 0.53 7.97 6.36 -10.98 -0.07 7.90 16 10 O -0.54 -9.58 14.92 5.57 0.08 -9.49 16 11 N -0.71 -10.80 4.39 -53.81 -0.24 -11.04 16 12 C 0.13 2.13 2.73 -67.93 -0.19 1.95 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 14 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 15 C 0.15 2.89 5.82 -4.05 -0.02 2.87 16 16 N -0.74 -18.09 5.43 -59.91 -0.33 -18.42 16 17 C -0.34 -9.29 9.99 -15.06 -0.15 -9.44 16 18 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 20 N -0.94 -28.59 13.70 55.49 0.76 -27.83 16 21 Si 1.08 25.67 29.92 -169.99 -5.09 20.58 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.12 1.39 6.12 -2.42 -0.01 1.38 16 26 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.09 0.46 7.95 -51.93 -0.41 0.04 16 29 H 0.08 0.47 7.30 -51.93 -0.38 0.09 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 32 H 0.10 1.22 6.46 -51.93 -0.34 0.89 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.98 7.50 -51.93 -0.39 0.59 16 36 H 0.40 6.06 7.94 -40.82 -0.32 5.73 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.37 9.29 6.17 -40.82 -0.25 9.03 16 43 H 0.25 7.62 6.77 -40.82 -0.28 7.35 16 44 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 45 H 0.09 1.19 7.60 -51.93 -0.39 0.80 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -34.64 365.88 -7.10 -41.75 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.40 Total: 11.37 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.05 Total: 3.48 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.36 Total: -64.48 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.21 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.64 -7.10 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699384816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.219 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds