Wall clock time and date at job start Tue Mar 31 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00079 * 2 1 4 4 N 1.34780 * 120.00011 * 179.97438 * 2 1 3 5 5 C 1.48143 * 127.83846 * 359.97315 * 4 2 1 6 6 C 1.54386 * 104.61873 * 140.41936 * 5 4 2 7 7 C 1.54287 * 104.95819 * 23.86406 * 6 5 4 8 8 C 1.53001 * 110.34402 * 241.02361 * 7 6 5 9 9 C 1.50703 * 110.33901 * 118.87482 * 7 6 5 10 10 O 1.21271 * 120.00185 * 0.02562 * 9 7 6 11 11 N 1.34776 * 119.99577 * 179.97438 * 9 7 6 12 12 C 1.46499 * 119.99869 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47242 * 35.00655 * 12 11 9 14 14 C 1.52998 * 109.47381 * 275.00511 * 12 11 9 15 15 C 1.53001 * 109.47128 * 155.00256 * 12 11 9 16 16 N 1.46490 * 109.47264 * 305.00135 * 15 12 11 17 17 C 1.36935 * 120.00121 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.48141 * 127.83560 * 179.97438 * 4 2 1 26 26 H 1.09009 * 109.46958 * 239.99997 * 1 2 3 27 27 H 1.08992 * 109.47431 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46924 * 120.00398 * 1 2 3 29 29 H 1.08995 * 110.40781 * 21.62993 * 5 4 2 30 30 H 1.09000 * 110.40694 * 259.20160 * 5 4 2 31 31 H 1.09001 * 110.33895 * 265.00127 * 6 5 4 32 32 H 1.08991 * 110.43525 * 142.78245 * 6 5 4 33 33 H 1.08993 * 109.47594 * 298.53138 * 8 7 6 34 34 H 1.09004 * 109.46905 * 58.52843 * 8 7 6 35 35 H 1.08994 * 109.47511 * 178.52462 * 8 7 6 36 36 H 0.97002 * 120.00373 * 0.02562 * 11 9 7 37 37 H 1.09005 * 109.47168 * 59.99843 * 14 12 11 38 38 H 1.09000 * 109.47193 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.47450 * 300.00005 * 14 12 11 40 40 H 1.09003 * 109.46836 * 184.99842 * 15 12 11 41 41 H 1.08999 * 109.47071 * 65.00881 * 15 12 11 42 42 H 0.97000 * 120.00577 * 0.02562 * 16 15 12 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.08998 * 110.41132 * 100.79975 * 25 4 2 45 45 H 1.08993 * 110.40983 * 338.36498 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.6221 -2.5392 0.0017 6 6 2.5410 -3.3350 -0.9500 7 6 3.8772 -2.5635 -0.9510 8 6 4.2043 -2.0683 -2.3612 9 6 4.9885 -3.4401 -0.4337 10 8 4.7529 -4.5794 -0.0915 11 7 6.2445 -2.9580 -0.3522 12 6 7.3248 -3.8099 0.1513 13 1 7.1530 -4.8390 -0.1640 14 6 7.3568 -3.7433 1.6795 15 6 8.6623 -3.3216 -0.4087 16 7 8.5907 -3.2721 -1.8710 17 6 9.6772 -2.8612 -2.5962 18 1 10.5870 -2.5741 -2.0901 19 6 9.6092 -2.8138 -3.9819 20 7 8.5002 -3.1633 -4.5987 21 14 11.0915 -2.2540 -4.9712 22 1 10.7635 -2.2921 -6.4190 23 1 11.4510 -0.8667 -4.5819 24 1 12.2382 -3.1574 -4.6990 25 6 3.6485 -1.3692 0.0001 26 1 -0.3633 -0.5139 0.8901 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 0.5991 -2.5333 -0.3745 30 1 1.6564 -2.9627 1.0055 31 1 2.1169 -3.3594 -1.9538 32 1 2.6889 -4.3484 -0.5771 33 1 4.3112 -2.9219 -3.0305 34 1 3.3983 -1.4264 -2.7169 35 1 5.1364 -1.5036 -2.3409 36 1 6.4330 -2.0468 -0.6262 37 1 6.4039 -4.0911 2.0784 38 1 8.1603 -4.3774 2.0540 39 1 7.5287 -2.7141 1.9948 40 1 9.4545 -4.0068 -0.1066 41 1 8.8764 -2.3255 -0.0214 42 1 7.7735 -3.5297 -2.3256 43 1 7.7306 -3.4544 -4.0849 44 1 3.9994 -1.6100 1.0036 45 1 4.1543 -0.4806 -0.3773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699384816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:08 Heat of formation + Delta-G solvation = -89.822904 kcal Electronic energy + Delta-G solvation = -25192.433386 eV Core-core repulsion = 21629.907633 eV Total energy + Delta-G solvation = -3562.525753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89489 -40.47340 -38.63015 -37.66957 -35.78666 -34.40442 -32.90267 -31.48382 -30.81510 -30.39724 -27.46987 -27.14721 -25.00753 -24.68265 -23.77329 -21.87486 -20.56803 -20.43231 -19.38259 -18.47808 -17.97697 -17.44560 -16.88930 -16.54192 -16.22869 -16.10817 -15.79585 -15.38202 -15.31824 -14.89255 -14.80462 -14.29668 -14.13855 -13.85593 -13.68140 -13.53295 -13.38680 -13.32124 -13.17214 -12.96451 -12.86059 -12.66970 -12.60180 -12.31849 -12.12749 -11.98124 -11.88859 -11.84159 -11.27900 -11.12777 -10.98373 -10.76977 -10.15511 -9.88596 -9.13761 -8.39826 -5.34824 1.44964 1.58316 1.58647 1.67910 1.83963 1.84527 2.17236 2.70125 3.22530 3.37312 3.40358 3.60825 3.67362 3.79603 3.86723 3.97537 4.14812 4.19808 4.23055 4.37504 4.42119 4.48884 4.49876 4.60450 4.66677 4.69394 4.72182 4.74756 4.77558 4.83721 4.87826 5.01557 5.05654 5.10260 5.11242 5.22316 5.25251 5.48028 5.58396 6.44399 6.48292 6.49497 7.05990 7.06414 7.11769 7.96986 8.07966 9.11051 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.003866 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.213766 B = 7240.369860 C = 7987.055245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.522 3.478 3 O -0.602 6.602 4 N -0.621 5.621 5 C 0.107 3.893 6 C -0.123 4.123 7 C -0.086 4.086 8 C -0.129 4.129 9 C 0.528 3.472 10 O -0.569 6.569 11 N -0.707 5.707 12 C 0.139 3.861 13 H 0.063 0.937 14 C -0.145 4.145 15 C 0.150 3.850 16 N -0.753 5.753 17 C -0.337 4.337 18 H 0.068 0.932 19 C -0.100 4.100 20 N -0.971 5.971 21 Si 1.127 2.873 22 H -0.294 1.294 23 H -0.277 1.277 24 H -0.279 1.279 25 C 0.120 3.880 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.405 0.595 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.361 0.639 43 H 0.242 0.758 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 1.790 12.295 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.315 3.685 3 O -0.483 6.483 4 N -0.355 5.355 5 C -0.015 4.015 6 C -0.161 4.161 7 C -0.091 4.091 8 C -0.187 4.187 9 C 0.314 3.686 10 O -0.448 6.448 11 N -0.358 5.358 12 C 0.034 3.966 13 H 0.081 0.919 14 C -0.204 4.204 15 C 0.023 3.977 16 N -0.399 5.399 17 C -0.468 4.468 18 H 0.086 0.914 19 C -0.292 4.292 20 N -0.618 5.618 21 Si 0.952 3.048 22 H -0.220 1.220 23 H -0.203 1.203 24 H -0.206 1.206 25 C -0.004 4.004 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.241 0.759 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.194 0.806 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.205 1.971 11.172 19.781 hybrid contribution -0.209 -0.125 1.049 1.077 sum -16.414 1.846 12.220 20.546 Atomic orbital electron populations 1.21925 0.87103 1.06249 1.06551 1.21439 0.92183 0.80861 0.74033 1.90723 1.72256 1.32499 1.52865 1.49138 1.06750 1.06990 1.72615 1.22641 0.99313 0.78960 1.00566 1.22668 0.91373 1.00071 1.01986 1.21635 0.95026 0.95464 0.96932 1.21773 1.02139 1.01354 0.93429 1.20560 0.83873 0.87420 0.76703 1.90624 1.83332 1.19994 1.50869 1.46042 1.07470 1.17185 1.65055 1.21128 0.85792 0.94362 0.95300 0.91851 1.21996 1.02712 1.03244 0.92457 1.21058 0.94590 0.98638 0.83369 1.42508 1.13942 1.81470 1.01951 1.20376 0.93922 1.40372 0.92129 0.91398 1.27149 1.05326 1.01264 0.95451 1.71006 1.03662 1.49692 1.37478 0.82631 0.71456 0.76374 0.74340 1.22049 1.20326 1.20560 1.22153 0.83068 0.96498 0.98647 0.86833 0.89014 0.86922 0.86168 0.89579 0.89007 0.88818 0.92547 0.90372 0.93046 0.75948 0.92417 0.90155 0.91161 0.94588 0.94668 0.80633 0.94730 0.90539 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.30 71.24 0.66 -1.00 16 2 C 0.52 11.34 8.02 87.66 0.70 12.04 16 3 O -0.60 -19.53 17.35 -3.03 -0.05 -19.58 16 4 N -0.62 -12.15 3.32 -808.01 -2.68 -14.83 16 5 C 0.11 1.42 6.92 86.53 0.60 2.02 16 6 C -0.12 -2.33 6.24 31.50 0.20 -2.13 16 7 C -0.09 -2.11 0.87 -52.02 -0.05 -2.15 16 8 C -0.13 -3.48 8.13 71.98 0.58 -2.89 16 9 C 0.53 16.07 6.36 87.66 0.56 16.63 16 10 O -0.57 -20.18 14.92 -3.00 -0.04 -20.22 16 11 N -0.71 -21.93 4.39 -442.54 -1.94 -23.87 16 12 C 0.14 4.52 2.73 44.99 0.12 4.64 16 13 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 14 C -0.15 -3.66 9.48 71.98 0.68 -2.98 16 15 C 0.15 5.76 5.82 86.38 0.50 6.26 16 16 N -0.75 -37.20 5.43 -343.47 -1.87 -39.07 16 17 C -0.34 -18.68 9.99 84.03 0.84 -17.84 16 18 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 19 C -0.10 -5.76 5.50 84.86 0.47 -5.29 16 20 N -0.97 -60.14 13.70 21.65 0.30 -59.84 16 21 Si 1.13 51.57 29.92 68.60 2.05 53.63 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 C 0.12 2.80 6.12 86.53 0.53 3.33 16 26 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 28 H 0.11 0.67 7.95 -2.39 -0.02 0.65 16 29 H 0.12 0.77 7.30 -2.39 -0.02 0.75 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.54 7.71 -2.39 -0.02 1.52 16 32 H 0.09 2.08 6.46 -2.39 -0.02 2.06 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.05 1.54 7.50 -2.39 -0.02 1.52 16 36 H 0.41 12.46 7.94 -92.71 -0.74 11.72 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.36 18.76 6.17 -92.71 -0.57 18.19 16 43 H 0.24 15.04 6.77 -92.71 -0.63 14.41 16 44 H 0.08 1.74 7.85 -2.39 -0.02 1.72 16 45 H 0.08 2.03 7.60 -2.39 -0.02 2.01 16 Total: -1.00 -76.43 365.88 1.99 -74.44 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.18 Total: 38.70 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.40 Total: 10.64 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -6.19 Total: -137.60 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.10 Total: -39.81 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.63 kcal Total: -76.43 1.99 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699384816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.382 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds