Wall clock time and date at job start Tue Mar 31 2020 03:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21278 * 119.99684 * 2 1 4 4 N 1.34777 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99686 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47084 * 59.99964 * 5 4 2 7 7 C 1.52996 * 109.47125 * 299.99935 * 5 4 2 8 8 C 1.50699 * 109.46890 * 179.97438 * 5 4 2 9 9 O 1.21277 * 120.00090 * 144.99737 * 8 5 4 10 10 N 1.34779 * 120.00383 * 325.00140 * 8 5 4 11 11 C 1.46494 * 120.00531 * 179.97438 * 10 8 5 12 12 H 1.09000 * 109.47008 * 325.00296 * 11 10 8 13 13 C 1.52996 * 109.47509 * 205.00222 * 11 10 8 14 14 N 1.46498 * 109.47059 * 54.99655 * 13 11 10 15 15 C 1.36943 * 119.99752 * 179.72430 * 14 13 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47294 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 329.99846 * 19 17 15 23 23 C 1.53004 * 109.47171 * 84.99693 * 11 10 8 24 24 C 1.53005 * 117.49613 * 8.75247 * 23 11 10 25 25 C 1.52997 * 117.49957 * 300.09370 * 23 11 10 26 26 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46888 * 299.99565 * 1 2 3 28 28 H 1.08996 * 109.46917 * 59.99943 * 1 2 3 29 29 H 0.96997 * 119.99883 * 359.97438 * 4 2 1 30 30 H 1.08995 * 109.47034 * 179.97438 * 6 5 4 31 31 H 1.09007 * 109.47349 * 299.99710 * 6 5 4 32 32 H 1.09005 * 109.47291 * 59.99726 * 6 5 4 33 33 H 1.09001 * 109.47067 * 299.99854 * 7 5 4 34 34 H 1.09000 * 109.47479 * 59.99703 * 7 5 4 35 35 H 1.09000 * 109.47244 * 180.02562 * 7 5 4 36 36 H 0.97009 * 119.99558 * 0.02562 * 10 8 5 37 37 H 1.09004 * 109.47066 * 294.99922 * 13 11 10 38 38 H 1.08994 * 109.46974 * 175.00070 * 13 11 10 39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 40 40 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.54876 * 154.41877 * 23 11 10 42 42 H 1.09005 * 117.49448 * 359.97438 * 24 23 11 43 43 H 1.08994 * 117.49848 * 145.02087 * 24 23 11 44 44 H 1.08997 * 117.49655 * 214.97733 * 25 23 11 45 45 H 1.09004 * 117.50130 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1564 -0.4461 1.2481 7 6 4.1555 -0.4456 -1.2503 8 6 4.1484 -2.5879 -0.0010 9 8 5.1614 -2.8730 -0.6038 10 7 3.4719 -3.5419 0.6689 11 6 3.9599 -4.9232 0.6686 12 1 4.4117 -5.1486 -0.2974 13 6 2.7906 -5.8773 0.9198 14 7 1.7373 -5.6297 -0.0679 15 6 0.5875 -6.3731 -0.0437 16 1 0.4554 -7.1390 0.7062 17 6 -0.4080 -6.1424 -0.9831 18 7 -0.2466 -5.2093 -1.8974 19 14 -1.9767 -7.1560 -0.9498 20 1 -2.9813 -6.4851 -0.0861 21 1 -2.5142 -7.2817 -2.3284 22 1 -1.6817 -8.5069 -0.4084 23 6 5.0048 -5.0952 1.7729 24 6 5.1882 -3.9391 2.7582 25 6 6.2588 -4.2215 1.7012 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 5.2464 -0.4465 1.2479 31 1 3.7931 0.5816 1.2485 32 1 3.7934 -0.9602 2.1382 33 1 3.7918 -0.9593 -2.1403 34 1 3.7921 0.5820 -1.2501 35 1 5.2455 -0.4459 -1.2510 36 1 2.6613 -3.3140 1.1508 37 1 2.3951 -5.7115 1.9220 38 1 3.1366 -6.9071 0.8316 39 1 1.8562 -4.9420 -0.7416 40 1 -0.9425 -5.0478 -2.5536 41 1 5.1186 -6.1082 2.1588 42 1 4.5646 -3.0558 2.6194 43 1 5.4230 -4.1915 3.7922 44 1 7.1974 -4.6596 2.0403 45 1 6.3395 -3.5244 0.8671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699593892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:44 Heat of formation + Delta-G solvation = -34.170964 kcal Electronic energy + Delta-G solvation = -25882.539735 eV Core-core repulsion = 22322.427232 eV Total energy + Delta-G solvation = -3560.112504 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81781 -39.34344 -37.36976 -35.38206 -34.98252 -33.33851 -32.04122 -31.20855 -28.87847 -28.33827 -27.20204 -24.38421 -23.62213 -22.30178 -21.56398 -20.74841 -19.91518 -19.35834 -18.16838 -17.24749 -16.58510 -16.09415 -15.69499 -15.19486 -15.10594 -14.70113 -14.35107 -13.86807 -13.81203 -13.59338 -13.34034 -13.09965 -12.81871 -12.58093 -12.40598 -12.35647 -12.07880 -11.93458 -11.70526 -11.66098 -11.39880 -11.29564 -11.17610 -10.97337 -10.90000 -10.30177 -10.18325 -9.93785 -9.87395 -9.64541 -9.35073 -9.14258 -9.01423 -8.78590 -7.07111 -5.88615 -3.18495 2.55300 2.71609 3.19880 3.31282 3.35416 3.42186 3.43221 4.00137 4.47045 4.62603 4.84869 4.88425 4.99870 5.04271 5.13511 5.15036 5.33970 5.44165 5.48075 5.49152 5.62683 5.68593 5.69818 5.79644 5.82097 5.91927 5.94342 5.95229 5.96559 6.11871 6.18977 6.24627 6.35229 6.39507 6.45478 6.47334 6.59546 6.80993 7.50656 7.59592 7.65890 8.23131 8.28966 8.34326 9.41473 9.95245 10.31186 11.33368 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.006081 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.178383 B = 4603.604775 C = 6457.865444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.521 3.479 3 O -0.549 6.549 4 N -0.723 5.723 5 C 0.160 3.840 6 C -0.158 4.158 7 C -0.149 4.149 8 C 0.519 3.481 9 O -0.528 6.528 10 N -0.706 5.706 11 C 0.167 3.833 12 H 0.092 0.908 13 C 0.147 3.853 14 N -0.731 5.731 15 C -0.243 4.243 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.161 4.161 24 C -0.178 4.178 25 C -0.187 4.187 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.410 0.590 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.403 0.597 37 H 0.027 0.973 38 H 0.035 0.965 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 7.814 7.751 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.309 3.691 3 O -0.427 6.427 4 N -0.379 5.379 5 C 0.071 3.929 6 C -0.216 4.216 7 C -0.207 4.207 8 C 0.304 3.696 9 O -0.404 6.404 10 N -0.357 5.357 11 C 0.062 3.938 12 H 0.110 0.890 13 C 0.019 3.981 14 N -0.376 5.376 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.180 4.180 24 C -0.215 4.215 25 C -0.223 4.223 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.248 0.752 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.806 8.191 7.350 13.493 hybrid contribution -1.559 -0.907 0.009 1.803 sum 6.247 7.284 7.359 12.093 Atomic orbital electron populations 1.21877 0.91408 1.05160 1.04952 1.20784 0.90620 0.83116 0.74595 1.90629 1.70549 1.31505 1.50007 1.46396 1.05951 1.09892 1.75704 1.20552 0.80741 0.92845 0.98762 1.22181 1.01731 1.02754 0.94944 1.22032 1.01972 1.01599 0.95146 1.20404 0.84373 0.86457 0.78380 1.90641 1.24846 1.81724 1.43162 1.46080 1.28609 1.08694 1.52347 1.20806 0.93964 0.80605 0.98415 0.88962 1.20927 0.87851 0.95558 0.93772 1.42335 1.16075 1.44071 1.35133 1.19206 0.93520 1.13170 1.11479 0.91125 1.24726 0.98774 0.99230 0.97911 1.69652 1.34446 1.34575 1.19192 0.86197 0.83501 0.79708 0.76780 1.21713 1.21793 1.20798 1.22691 0.98629 0.96436 1.00289 1.22915 1.03390 1.00190 0.95043 1.23331 0.92604 1.04079 1.02309 0.89720 0.88893 0.88726 0.75248 0.91191 0.89167 0.92264 0.92106 0.89847 0.90883 0.76152 0.95482 0.94687 0.78157 0.93456 0.87208 0.89027 0.89473 0.89692 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.39 36.01 0.37 -1.48 16 2 C 0.52 6.96 7.36 -10.98 -0.08 6.88 16 3 O -0.55 -8.65 13.31 5.56 0.07 -8.58 16 4 N -0.72 -9.51 4.86 -48.68 -0.24 -9.75 16 5 C 0.16 2.19 0.98 -132.97 -0.13 2.06 16 6 C -0.16 -1.93 8.38 37.16 0.31 -1.62 16 7 C -0.15 -2.14 7.93 37.16 0.29 -1.85 16 8 C 0.52 7.88 5.48 -10.99 -0.06 7.82 16 9 O -0.53 -9.37 13.12 5.56 0.07 -9.30 16 10 N -0.71 -10.22 2.75 -53.81 -0.15 -10.37 16 11 C 0.17 2.61 2.59 -67.93 -0.18 2.43 16 12 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 13 C 0.15 2.64 5.80 -4.04 -0.02 2.62 16 14 N -0.73 -16.58 5.43 -59.91 -0.33 -16.91 16 15 C -0.24 -6.25 9.99 -15.06 -0.15 -6.40 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -25.95 13.06 55.49 0.72 -25.22 16 19 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.16 -2.16 5.71 -90.62 -0.52 -2.67 16 24 C -0.18 -2.17 9.74 -26.69 -0.26 -2.43 16 25 C -0.19 -2.47 9.82 -26.69 -0.26 -2.73 16 26 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.41 5.52 7.08 -40.82 -0.29 5.23 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.19 6.17 -51.93 -0.32 0.87 16 32 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 35 H 0.07 1.01 7.87 -51.93 -0.41 0.61 16 36 H 0.40 5.55 7.35 -40.82 -0.30 5.25 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.38 9.25 7.33 -40.82 -0.30 8.95 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.09 1.13 6.23 -51.93 -0.32 0.81 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.12 1.78 5.01 -51.93 -0.26 1.52 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -29.58 358.88 -7.31 -36.88 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -7.08 Total: 19.40 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.78 Total: 2.28 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.01 Total: -62.24 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.15 Total: -17.88 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.58 -7.31 -36.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699593892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.710 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds