Wall clock time and date at job start Tue Mar 31 2020 03:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21278 * 119.99684 * 2 1 4 4 N 1.34777 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.46507 * 119.99686 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47084 * 59.99964 * 5 4 2 7 7 C 1.52996 * 109.47125 * 299.99935 * 5 4 2 8 8 C 1.50699 * 109.46890 * 179.97438 * 5 4 2 9 9 O 1.21277 * 120.00090 * 144.99737 * 8 5 4 10 10 N 1.34779 * 120.00383 * 325.00140 * 8 5 4 11 11 C 1.46494 * 120.00531 * 179.97438 * 10 8 5 12 12 H 1.09000 * 109.47008 * 325.00296 * 11 10 8 13 13 C 1.52996 * 109.47509 * 205.00222 * 11 10 8 14 14 N 1.46498 * 109.47059 * 54.99655 * 13 11 10 15 15 C 1.36943 * 119.99752 * 179.72430 * 14 13 11 16 16 H 1.08002 * 119.99793 * 0.27665 * 15 14 13 17 17 C 1.38811 * 120.00012 * 180.27737 * 15 14 13 18 18 N 1.31624 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47294 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 329.99846 * 19 17 15 23 23 C 1.53004 * 109.47171 * 84.99693 * 11 10 8 24 24 C 1.53005 * 117.49613 * 8.75247 * 23 11 10 25 25 C 1.52997 * 117.49957 * 300.09370 * 23 11 10 26 26 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46888 * 299.99565 * 1 2 3 28 28 H 1.08996 * 109.46917 * 59.99943 * 1 2 3 29 29 H 0.96997 * 119.99883 * 359.97438 * 4 2 1 30 30 H 1.08995 * 109.47034 * 179.97438 * 6 5 4 31 31 H 1.09007 * 109.47349 * 299.99710 * 6 5 4 32 32 H 1.09005 * 109.47291 * 59.99726 * 6 5 4 33 33 H 1.09001 * 109.47067 * 299.99854 * 7 5 4 34 34 H 1.09000 * 109.47479 * 59.99703 * 7 5 4 35 35 H 1.09000 * 109.47244 * 180.02562 * 7 5 4 36 36 H 0.97009 * 119.99558 * 0.02562 * 10 8 5 37 37 H 1.09004 * 109.47066 * 294.99922 * 13 11 10 38 38 H 1.08994 * 109.46974 * 175.00070 * 13 11 10 39 39 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 40 40 H 0.96999 * 119.99739 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.54876 * 154.41877 * 23 11 10 42 42 H 1.09005 * 117.49448 * 359.97438 * 24 23 11 43 43 H 1.08994 * 117.49848 * 145.02087 * 24 23 11 44 44 H 1.08997 * 117.49655 * 214.97733 * 25 23 11 45 45 H 1.09004 * 117.50130 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1564 -0.4461 1.2481 7 6 4.1555 -0.4456 -1.2503 8 6 4.1484 -2.5879 -0.0010 9 8 5.1614 -2.8730 -0.6038 10 7 3.4719 -3.5419 0.6689 11 6 3.9599 -4.9232 0.6686 12 1 4.4117 -5.1486 -0.2974 13 6 2.7906 -5.8773 0.9198 14 7 1.7373 -5.6297 -0.0679 15 6 0.5875 -6.3731 -0.0437 16 1 0.4554 -7.1390 0.7062 17 6 -0.4080 -6.1424 -0.9831 18 7 -0.2466 -5.2093 -1.8974 19 14 -1.9767 -7.1560 -0.9498 20 1 -2.9813 -6.4851 -0.0861 21 1 -2.5142 -7.2817 -2.3284 22 1 -1.6817 -8.5069 -0.4084 23 6 5.0048 -5.0952 1.7729 24 6 5.1882 -3.9391 2.7582 25 6 6.2588 -4.2215 1.7012 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 5.2464 -0.4465 1.2479 31 1 3.7931 0.5816 1.2485 32 1 3.7934 -0.9602 2.1382 33 1 3.7918 -0.9593 -2.1403 34 1 3.7921 0.5820 -1.2501 35 1 5.2455 -0.4459 -1.2510 36 1 2.6613 -3.3140 1.1508 37 1 2.3951 -5.7115 1.9220 38 1 3.1366 -6.9071 0.8316 39 1 1.8562 -4.9420 -0.7416 40 1 -0.9425 -5.0478 -2.5536 41 1 5.1186 -6.1082 2.1588 42 1 4.5646 -3.0558 2.6194 43 1 5.4230 -4.1915 3.7922 44 1 7.1974 -4.6596 2.0403 45 1 6.3395 -3.5244 0.8671 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699593892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:43 Heat of formation + Delta-G solvation = -53.649718 kcal Electronic energy + Delta-G solvation = -25883.384398 eV Core-core repulsion = 22322.427232 eV Total energy + Delta-G solvation = -3560.957166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00667 -40.49469 -38.57628 -36.62547 -36.45829 -34.79047 -33.11717 -32.95839 -29.89433 -29.81410 -28.31380 -26.06711 -24.90983 -23.45655 -22.93382 -21.89193 -21.08666 -20.51534 -19.47152 -18.94654 -17.73437 -17.31095 -16.98784 -16.58457 -16.22685 -16.13692 -15.59989 -15.21539 -15.10406 -15.00645 -14.73404 -14.51351 -14.13688 -13.66409 -13.52074 -13.41852 -13.25214 -13.08757 -12.99438 -12.84552 -12.73393 -12.68085 -12.64222 -12.37751 -12.22893 -12.07017 -11.81304 -11.34033 -11.07583 -10.94421 -10.80323 -10.51871 -10.25865 -10.03868 -8.96907 -7.90383 -5.19064 1.35920 1.51588 1.53466 1.60397 1.63753 1.98968 2.21043 2.58650 2.95602 3.42862 3.46237 3.64327 3.80951 3.91658 3.96958 4.01435 4.10359 4.20290 4.42410 4.47277 4.49983 4.60335 4.64902 4.65261 4.68236 4.70388 4.77756 4.85237 4.89928 5.05773 5.09643 5.12694 5.14700 5.18197 5.29143 5.34818 5.40144 5.51312 5.56951 6.29887 6.39162 6.47412 7.08158 7.19483 7.38767 8.09607 8.35113 9.31580 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.006081 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.178383 B = 4603.604775 C = 6457.865444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.518 3.482 3 O -0.573 6.573 4 N -0.720 5.720 5 C 0.162 3.838 6 C -0.149 4.149 7 C -0.144 4.144 8 C 0.521 3.479 9 O -0.554 6.554 10 N -0.698 5.698 11 C 0.177 3.823 12 H 0.064 0.936 13 C 0.150 3.850 14 N -0.739 5.739 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.065 4.065 18 N -0.960 5.960 19 Si 0.966 3.034 20 H -0.285 1.285 21 H -0.302 1.302 22 H -0.275 1.275 23 C -0.167 4.167 24 C -0.162 4.162 25 C -0.190 4.190 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.409 0.591 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.408 0.592 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 7.489 9.687 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.307 3.693 3 O -0.454 6.454 4 N -0.376 5.376 5 C 0.072 3.928 6 C -0.207 4.207 7 C -0.202 4.202 8 C 0.307 3.693 9 O -0.432 6.432 10 N -0.349 5.349 11 C 0.072 3.928 12 H 0.082 0.918 13 C 0.023 3.977 14 N -0.383 5.383 15 C -0.374 4.374 16 H 0.094 0.906 17 C -0.258 4.258 18 N -0.610 5.610 19 Si 0.796 3.204 20 H -0.212 1.212 21 H -0.230 1.230 22 H -0.201 1.201 23 C -0.186 4.186 24 C -0.199 4.199 25 C -0.227 4.227 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.246 0.754 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.245 0.755 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.208 0.792 40 H 0.058 0.942 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.119 0.881 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.602 7.842 9.333 14.367 hybrid contribution -1.432 -0.832 -0.589 1.758 sum 6.170 7.010 8.745 12.794 Atomic orbital electron populations 1.21892 0.89127 1.05521 1.06213 1.21276 0.91687 0.82555 0.73765 1.90620 1.71263 1.32233 1.51235 1.46404 1.05657 1.09957 1.75544 1.20522 0.81168 0.91842 0.99227 1.22105 1.02032 1.02090 0.94462 1.21966 1.02097 1.01202 0.94930 1.20595 0.83926 0.86979 0.77806 1.90637 1.26100 1.82233 1.44261 1.45976 1.28626 1.08192 1.52117 1.20552 0.93531 0.80573 0.98123 0.91786 1.21026 0.87411 0.96159 0.93095 1.42456 1.16488 1.43492 1.35832 1.19550 0.94175 1.12784 1.10849 0.90615 1.25397 1.01577 1.00622 0.98212 1.69788 1.35042 1.36211 1.20003 0.85260 0.80431 0.78704 0.75997 1.21189 1.22956 1.20065 1.22624 0.98082 0.97749 1.00191 1.22993 1.02083 0.99157 0.95714 1.23276 0.93417 1.03732 1.02255 0.89751 0.86986 0.88028 0.75365 0.90626 0.89892 0.90977 0.93650 0.90145 0.90637 0.75528 0.93974 0.94580 0.79247 0.94154 0.85750 0.89215 0.87292 0.88086 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 10.39 71.24 0.74 -2.61 16 2 C 0.52 13.48 7.36 87.66 0.65 14.12 16 3 O -0.57 -17.77 13.31 -3.02 -0.04 -17.81 16 4 N -0.72 -18.64 4.86 -426.32 -2.07 -20.71 16 5 C 0.16 4.38 0.98 2.85 0.00 4.38 16 6 C -0.15 -3.47 8.38 71.98 0.60 -2.87 16 7 C -0.14 -4.18 7.93 71.98 0.57 -3.61 16 8 C 0.52 15.76 5.48 87.66 0.48 16.24 16 9 O -0.55 -19.93 13.12 -3.02 -0.04 -19.97 16 10 N -0.70 -19.75 2.75 -442.55 -1.22 -20.97 16 11 C 0.18 5.42 2.59 44.99 0.12 5.53 16 12 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 13 C 0.15 5.20 5.80 86.38 0.50 5.70 16 14 N -0.74 -33.15 5.43 -343.46 -1.87 -35.01 16 15 C -0.24 -12.22 9.99 84.03 0.84 -11.38 16 16 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 17 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 18 N -0.96 -53.84 13.06 21.65 0.28 -53.56 16 19 Si 0.97 43.17 29.55 68.60 2.03 45.20 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 C -0.17 -4.15 5.71 -10.79 -0.06 -4.21 16 24 C -0.16 -3.51 9.74 30.62 0.30 -3.21 16 25 C -0.19 -4.70 9.82 30.62 0.30 -4.40 16 26 H 0.08 1.70 7.91 -2.39 -0.02 1.68 16 27 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.41 10.88 7.08 -92.71 -0.66 10.22 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.11 6.17 -2.38 -0.01 2.09 16 32 H 0.07 1.48 7.71 -2.38 -0.02 1.46 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.39 6.17 -2.39 -0.01 2.38 16 35 H 0.07 2.12 7.87 -2.39 -0.02 2.10 16 36 H 0.41 10.80 7.35 -92.70 -0.68 10.12 16 37 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.38 18.15 7.33 -92.71 -0.68 17.47 16 40 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 42 H 0.09 1.98 6.23 -2.38 -0.01 1.96 16 43 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.09 2.81 5.01 -2.38 -0.01 2.80 16 Total: -1.00 -62.34 358.88 1.59 -60.75 By element: Atomic # 1 Polarization: 52.34 SS G_CDS: -1.00 Total: 51.35 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 5.50 Total: 10.73 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -4.87 Total: -130.25 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.08 Total: -37.78 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -62.34 1.59 -60.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699593892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.101 kcal (2) G-P(sol) polarization free energy of solvation -62.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds