Wall clock time and date at job start Tue Mar 31 2020 03:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00171 * 2 1 4 4 N 1.34773 * 119.99564 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99604 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47105 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99763 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99708 * 180.27860 * 6 5 4 9 9 C 1.46499 * 119.99428 * 174.78730 * 8 6 5 10 10 H 1.08999 * 109.47729 * 4.74041 * 9 8 6 11 11 C 1.53006 * 109.46951 * 244.73844 * 9 8 6 12 12 N 1.46499 * 109.47335 * 55.00319 * 11 9 8 13 13 C 1.36927 * 120.00136 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00110 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00193 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47485 * 89.99633 * 17 15 13 19 19 H 1.48498 * 109.47209 * 209.99989 * 17 15 13 20 20 H 1.48501 * 109.47187 * 330.00149 * 17 15 13 21 21 C 1.53005 * 109.47180 * 124.74226 * 9 8 6 22 22 C 1.54268 * 110.03346 * 57.05272 * 21 9 8 23 23 C 1.54966 * 104.15892 * 217.14065 * 22 21 9 24 24 C 1.54884 * 102.77946 * 37.89001 * 23 22 21 25 25 C 1.53879 * 110.02912 * 299.83630 * 21 9 8 26 26 H 1.09002 * 109.47394 * 239.99880 * 1 2 3 27 27 H 1.08999 * 109.47253 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47250 * 119.99990 * 1 2 3 29 29 H 0.96992 * 120.00917 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.46919 * 60.00182 * 5 4 2 31 31 H 1.09001 * 109.47101 * 300.00195 * 5 4 2 32 32 H 0.96994 * 120.00195 * 354.78671 * 8 6 5 33 33 H 1.09003 * 109.46961 * 175.00448 * 11 9 8 34 34 H 1.09007 * 109.47045 * 294.99994 * 11 9 8 35 35 H 0.97008 * 119.99441 * 0.02562 * 12 11 9 36 36 H 0.96998 * 119.99932 * 180.02562 * 16 15 13 37 37 H 1.08994 * 110.02045 * 178.44724 * 21 9 8 38 38 H 1.09009 * 110.48252 * 335.78575 * 22 21 9 39 39 H 1.09000 * 110.48723 * 98.42696 * 22 21 9 40 40 H 1.08995 * 110.72014 * 279.57350 * 23 22 21 41 41 H 1.08998 * 110.91912 * 156.29475 * 23 22 21 42 42 H 1.08999 * 110.48894 * 203.40840 * 24 23 22 43 43 H 1.08997 * 110.60635 * 80.81241 * 24 23 22 44 44 H 1.08994 * 110.03117 * 238.56492 * 25 21 9 45 45 H 1.08998 * 110.02960 * 359.95182 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1482 -2.5881 0.0010 7 8 3.3600 -3.5099 0.0000 8 7 5.4733 -2.8343 0.0071 9 6 5.9619 -4.2106 0.1223 10 1 5.1167 -4.8988 0.1073 11 6 6.7275 -4.3716 1.4372 12 7 5.8728 -3.9599 2.5535 13 6 6.3475 -4.0172 3.8366 14 1 7.3522 -4.3654 4.0256 15 6 5.5378 -3.6266 4.8943 16 7 5.9940 -3.6821 6.1277 17 14 3.8004 -3.0235 4.5673 18 1 2.8626 -4.1744 4.5993 19 1 3.4131 -2.0403 5.6107 20 1 3.7441 -2.3762 3.2320 21 6 6.8931 -4.5211 -1.0514 22 6 8.0557 -3.5076 -1.0859 23 6 8.2973 -3.2592 -2.5963 24 6 6.8619 -3.2643 -3.1782 25 6 6.1345 -4.3669 -2.3812 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 1.6959 -2.0072 0.0005 30 1 4.0088 -0.6532 0.8911 31 1 4.0095 -0.6536 -0.8889 32 1 6.1033 -2.1003 -0.0647 33 1 7.0145 -5.4153 1.5650 34 1 7.6219 -3.7489 1.4154 35 1 4.9705 -3.6467 2.3836 36 1 5.4280 -3.4095 6.8668 37 1 7.2838 -5.5345 -0.9598 38 1 7.7691 -2.5812 -0.5881 39 1 8.9457 -3.9320 -0.6211 40 1 8.8924 -4.0633 -3.0291 41 1 8.7771 -2.2943 -2.7602 42 1 6.8814 -3.5109 -4.2398 43 1 6.3806 -2.2991 -3.0205 44 1 6.1578 -5.3051 -2.9353 45 1 5.1027 -4.0717 -2.1904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699787748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:18 Heat of formation + Delta-G solvation = -75.600558 kcal Electronic energy + Delta-G solvation = -25307.665635 eV Core-core repulsion = 21745.756609 eV Total energy + Delta-G solvation = -3561.909026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43900 -39.46034 -38.16639 -35.49833 -34.44275 -33.66581 -31.61031 -30.65426 -30.00006 -28.80885 -27.18988 -26.35274 -23.13875 -21.56907 -21.16767 -20.65607 -20.21311 -19.40696 -17.86759 -17.64657 -16.58377 -16.25819 -16.00696 -15.70171 -15.61301 -14.83704 -14.59929 -14.37343 -13.88172 -13.82123 -13.44233 -13.33750 -13.11418 -12.85276 -12.73361 -12.68394 -12.26742 -12.11499 -11.92067 -11.58604 -11.17782 -11.11141 -10.90534 -10.74096 -10.67558 -10.58101 -10.52403 -10.15234 -10.06704 -9.88767 -9.62183 -9.27175 -8.92995 -8.86530 -7.24954 -5.78858 -3.13935 2.50668 2.61788 2.83505 3.36139 3.41725 3.44724 3.48374 4.47406 4.55459 4.58003 4.61681 4.64866 4.75997 5.08826 5.10790 5.15672 5.25109 5.31697 5.37292 5.38619 5.49459 5.50374 5.54971 5.57619 5.66184 5.72222 5.77525 5.81375 5.84962 5.97062 6.04240 6.16726 6.20153 6.22660 6.29954 6.36437 6.55183 6.74903 7.39415 7.51562 7.96924 8.09432 8.20543 8.40293 9.19538 9.92214 10.11855 11.39407 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.007588 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.569033 B = 3689.329672 C = 6616.568262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.550 6.550 4 N -0.717 5.717 5 C 0.096 3.904 6 C 0.512 3.488 7 O -0.542 6.542 8 N -0.703 5.703 9 C 0.133 3.867 10 H 0.102 0.898 11 C 0.146 3.854 12 N -0.752 5.752 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.885 3.115 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.097 4.097 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.413 0.587 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.402 0.598 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 2.768 -20.285 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.428 6.428 4 N -0.373 5.373 5 C -0.032 4.032 6 C 0.298 3.702 7 O -0.420 6.420 8 N -0.355 5.355 9 C 0.029 3.971 10 H 0.120 0.880 11 C 0.018 3.982 12 N -0.398 5.398 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.581 5.581 17 Si 0.716 3.284 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.117 4.117 22 C -0.157 4.157 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.156 4.156 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.250 0.750 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.237 0.763 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.037 2.800 -20.061 20.481 hybrid contribution -1.106 0.341 0.035 1.158 sum -4.142 3.140 -20.026 20.689 Atomic orbital electron populations 1.21896 0.91243 1.05524 1.04532 1.20822 0.90781 0.83058 0.75463 1.90722 1.70883 1.31396 1.49808 1.45764 1.06075 1.09977 1.75486 1.21094 0.82398 0.94825 1.04838 1.20395 0.83220 0.90819 0.75773 1.90680 1.55118 1.45771 1.50423 1.45784 1.06254 1.10013 1.73420 1.21473 0.97850 0.83050 0.94754 0.88012 1.21036 0.93380 0.98335 0.85453 1.42636 1.14075 1.80143 1.02963 1.19038 0.99803 1.37090 0.81425 0.89181 1.24648 0.97763 1.01458 0.95122 1.69696 1.36499 1.54061 0.97820 0.86547 0.86402 0.78647 0.76807 1.21116 1.21803 1.20698 1.22083 0.95283 1.00280 0.94083 1.22445 0.98072 0.99105 0.96052 1.22507 0.96615 1.01301 0.95777 1.22329 0.95780 0.98930 0.98938 1.22156 0.99652 0.98627 0.95140 0.89156 0.88841 0.89292 0.74963 0.88093 0.88557 0.76270 0.94501 0.94955 0.80518 0.93059 0.89659 0.91519 0.91117 0.91663 0.91801 0.92185 0.91989 0.92093 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.32 36.01 0.37 -1.10 16 2 C 0.51 6.71 7.94 -10.99 -0.09 6.63 16 3 O -0.55 -9.30 17.09 5.56 0.09 -9.21 16 4 N -0.72 -9.35 5.53 -61.47 -0.34 -9.69 16 5 C 0.10 1.29 6.16 -5.19 -0.03 1.25 16 6 C 0.51 7.63 7.00 -10.98 -0.08 7.55 16 7 O -0.54 -9.51 15.01 5.55 0.08 -9.42 16 8 N -0.70 -9.50 3.75 -53.80 -0.20 -9.70 16 9 C 0.13 1.92 2.04 -67.93 -0.14 1.78 16 10 H 0.10 1.69 6.91 -51.93 -0.36 1.33 16 11 C 0.15 2.65 5.84 -4.04 -0.02 2.63 16 12 N -0.75 -17.73 5.24 -59.90 -0.31 -18.04 16 13 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 15 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 17 Si 0.89 23.01 27.74 -169.99 -4.71 18.30 16 18 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 20 H -0.28 -6.92 6.52 56.52 0.37 -6.56 16 21 C -0.10 -1.08 2.81 -89.50 -0.25 -1.33 16 22 C -0.12 -1.18 5.13 -25.03 -0.13 -1.31 16 23 C -0.12 -1.06 6.91 -24.70 -0.17 -1.23 16 24 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 25 C -0.12 -1.21 6.19 -25.61 -0.16 -1.37 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.41 5.08 7.44 -40.82 -0.30 4.77 16 30 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.40 4.62 6.96 -40.82 -0.28 4.34 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.57 7.13 -51.93 -0.37 0.20 16 35 H 0.36 8.65 4.67 -40.82 -0.19 8.46 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.68 5.96 -51.92 -0.31 0.37 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -35.41 360.57 -7.58 -42.98 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -7.27 Total: 12.86 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.12 Total: 5.27 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.08 Total: -66.21 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.18 Total: -18.63 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.41 -7.58 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699787748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.619 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds