Wall clock time and date at job start Tue Mar 31 2020 03:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00171 * 2 1 4 4 N 1.34773 * 119.99564 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99604 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47105 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99763 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99708 * 180.27860 * 6 5 4 9 9 C 1.46499 * 119.99428 * 174.78730 * 8 6 5 10 10 H 1.08999 * 109.47729 * 4.74041 * 9 8 6 11 11 C 1.53006 * 109.46951 * 244.73844 * 9 8 6 12 12 N 1.46499 * 109.47335 * 55.00319 * 11 9 8 13 13 C 1.36927 * 120.00136 * 180.02562 * 12 11 9 14 14 H 1.07998 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.38816 * 120.00110 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00193 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47485 * 89.99633 * 17 15 13 19 19 H 1.48498 * 109.47209 * 209.99989 * 17 15 13 20 20 H 1.48501 * 109.47187 * 330.00149 * 17 15 13 21 21 C 1.53005 * 109.47180 * 124.74226 * 9 8 6 22 22 C 1.54268 * 110.03346 * 57.05272 * 21 9 8 23 23 C 1.54966 * 104.15892 * 217.14065 * 22 21 9 24 24 C 1.54884 * 102.77946 * 37.89001 * 23 22 21 25 25 C 1.53879 * 110.02912 * 299.83630 * 21 9 8 26 26 H 1.09002 * 109.47394 * 239.99880 * 1 2 3 27 27 H 1.08999 * 109.47253 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47250 * 119.99990 * 1 2 3 29 29 H 0.96992 * 120.00917 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.46919 * 60.00182 * 5 4 2 31 31 H 1.09001 * 109.47101 * 300.00195 * 5 4 2 32 32 H 0.96994 * 120.00195 * 354.78671 * 8 6 5 33 33 H 1.09003 * 109.46961 * 175.00448 * 11 9 8 34 34 H 1.09007 * 109.47045 * 294.99994 * 11 9 8 35 35 H 0.97008 * 119.99441 * 0.02562 * 12 11 9 36 36 H 0.96998 * 119.99932 * 180.02562 * 16 15 13 37 37 H 1.08994 * 110.02045 * 178.44724 * 21 9 8 38 38 H 1.09009 * 110.48252 * 335.78575 * 22 21 9 39 39 H 1.09000 * 110.48723 * 98.42696 * 22 21 9 40 40 H 1.08995 * 110.72014 * 279.57350 * 23 22 21 41 41 H 1.08998 * 110.91912 * 156.29475 * 23 22 21 42 42 H 1.08999 * 110.48894 * 203.40840 * 24 23 22 43 43 H 1.08997 * 110.60635 * 80.81241 * 24 23 22 44 44 H 1.08994 * 110.03117 * 238.56492 * 25 21 9 45 45 H 1.08998 * 110.02960 * 359.95182 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1482 -2.5881 0.0010 7 8 3.3600 -3.5099 0.0000 8 7 5.4733 -2.8343 0.0071 9 6 5.9619 -4.2106 0.1223 10 1 5.1167 -4.8988 0.1073 11 6 6.7275 -4.3716 1.4372 12 7 5.8728 -3.9599 2.5535 13 6 6.3475 -4.0172 3.8366 14 1 7.3522 -4.3654 4.0256 15 6 5.5378 -3.6266 4.8943 16 7 5.9940 -3.6821 6.1277 17 14 3.8004 -3.0235 4.5673 18 1 2.8626 -4.1744 4.5993 19 1 3.4131 -2.0403 5.6107 20 1 3.7441 -2.3762 3.2320 21 6 6.8931 -4.5211 -1.0514 22 6 8.0557 -3.5076 -1.0859 23 6 8.2973 -3.2592 -2.5963 24 6 6.8619 -3.2643 -3.1782 25 6 6.1345 -4.3669 -2.3812 26 1 -0.3634 -0.5139 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 1.6959 -2.0072 0.0005 30 1 4.0088 -0.6532 0.8911 31 1 4.0095 -0.6536 -0.8889 32 1 6.1033 -2.1003 -0.0647 33 1 7.0145 -5.4153 1.5650 34 1 7.6219 -3.7489 1.4154 35 1 4.9705 -3.6467 2.3836 36 1 5.4280 -3.4095 6.8668 37 1 7.2838 -5.5345 -0.9598 38 1 7.7691 -2.5812 -0.5881 39 1 8.9457 -3.9320 -0.6211 40 1 8.8924 -4.0633 -3.0291 41 1 8.7771 -2.2943 -2.7602 42 1 6.8814 -3.5109 -4.2398 43 1 6.3806 -2.2991 -3.0205 44 1 6.1578 -5.3051 -2.9353 45 1 5.1027 -4.0717 -2.1904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699787748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:17 Heat of formation + Delta-G solvation = -102.003789 kcal Electronic energy + Delta-G solvation = -25308.810565 eV Core-core repulsion = 21745.756609 eV Total energy + Delta-G solvation = -3563.053956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57690 -40.50837 -39.19413 -36.97159 -35.58600 -35.21007 -33.43678 -31.89288 -31.01017 -29.60211 -28.19626 -27.76786 -24.80424 -23.02118 -22.26254 -21.68579 -21.10828 -20.47925 -19.74727 -18.79794 -17.69079 -17.32894 -17.13579 -16.82950 -16.61770 -16.43355 -15.88655 -15.57558 -15.48147 -14.97449 -14.83413 -14.32434 -14.24819 -14.18622 -13.84836 -13.77343 -13.41310 -13.35909 -13.19259 -12.97616 -12.91000 -12.22076 -11.96458 -11.90565 -11.85758 -11.78377 -11.55715 -11.47027 -11.38324 -11.17033 -11.12202 -10.98349 -10.34767 -10.06789 -9.32878 -8.08181 -5.39389 1.27344 1.31228 1.36071 1.40647 1.55460 1.78798 2.39724 2.44264 3.24078 3.39201 3.56174 3.70510 3.80650 3.88459 3.96604 4.17088 4.21568 4.27096 4.36072 4.49387 4.51414 4.61795 4.62833 4.68958 4.77663 4.86293 4.88549 4.89207 5.01176 5.06920 5.11168 5.14776 5.21374 5.31305 5.38112 5.44518 5.54571 5.55324 5.72297 6.16335 6.38719 6.42291 7.03026 7.06150 7.11107 7.80552 7.97363 9.13338 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.007997 B = 0.007588 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.569033 B = 3689.329672 C = 6616.568262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.506 3.494 3 O -0.594 6.594 4 N -0.717 5.717 5 C 0.097 3.903 6 C 0.511 3.489 7 O -0.570 6.570 8 N -0.696 5.696 9 C 0.146 3.854 10 H 0.082 0.918 11 C 0.141 3.859 12 N -0.756 5.756 13 C -0.226 4.226 14 H 0.064 0.936 15 C -0.058 4.058 16 N -0.979 5.979 17 Si 0.948 3.052 18 H -0.286 1.286 19 H -0.294 1.294 20 H -0.263 1.263 21 C -0.091 4.091 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.114 4.114 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.417 0.583 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.413 0.587 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.361 0.639 36 H 0.257 0.743 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 3.168 -22.727 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.295 3.705 3 O -0.475 6.475 4 N -0.372 5.372 5 C -0.031 4.031 6 C 0.298 3.702 7 O -0.449 6.449 8 N -0.348 5.348 9 C 0.041 3.959 10 H 0.100 0.900 11 C 0.015 3.985 12 N -0.401 5.401 13 C -0.358 4.358 14 H 0.082 0.918 15 C -0.250 4.250 16 N -0.630 5.630 17 Si 0.777 3.223 18 H -0.213 1.213 19 H -0.221 1.221 20 H -0.189 1.189 21 C -0.110 4.110 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.152 4.152 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.255 0.745 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.250 0.750 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.194 0.806 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.653 3.188 -22.565 23.080 hybrid contribution -0.804 0.137 0.760 1.114 sum -4.457 3.325 -21.805 22.503 Atomic orbital electron populations 1.21939 0.87585 1.06475 1.06438 1.21653 0.92523 0.82177 0.74099 1.90701 1.72108 1.32757 1.51926 1.45862 1.05921 1.10344 1.75116 1.21100 0.82995 0.93684 1.05314 1.20655 0.83271 0.91122 0.75188 1.90667 1.55828 1.46684 1.51756 1.45736 1.06263 1.10088 1.72715 1.21251 0.97333 0.83204 0.94113 0.89964 1.21270 0.93513 0.98160 0.85602 1.42680 1.14662 1.80132 1.02639 1.19066 0.98528 1.34730 0.83431 0.91760 1.25347 1.01731 1.02945 0.94993 1.69847 1.38062 1.56297 0.98806 0.85521 0.81609 0.77930 0.77237 1.21264 1.22120 1.18854 1.22044 0.95015 1.01021 0.92966 1.22462 0.97439 0.98502 0.97424 1.22473 0.96554 1.02167 0.94307 1.22317 0.95661 0.98296 0.99365 1.22103 0.98619 0.99642 0.94791 0.87762 0.88432 0.86647 0.74461 0.89287 0.86371 0.74968 0.94589 0.93830 0.80578 0.93363 0.89057 0.91776 0.91076 0.90910 0.90815 0.91062 0.91991 0.91294 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.32 71.24 0.74 -1.67 16 2 C 0.51 12.48 7.94 87.66 0.70 13.18 16 3 O -0.59 -19.58 17.09 -3.02 -0.05 -19.63 16 4 N -0.72 -17.53 5.53 -466.78 -2.58 -20.12 16 5 C 0.10 2.45 6.16 85.63 0.53 2.98 16 6 C 0.51 14.54 7.00 87.66 0.61 15.16 16 7 O -0.57 -19.35 15.01 -3.04 -0.05 -19.40 16 8 N -0.70 -17.80 3.75 -442.51 -1.66 -19.46 16 9 C 0.15 4.03 2.04 45.00 0.09 4.12 16 10 H 0.08 2.66 6.91 -2.39 -0.02 2.65 16 11 C 0.14 5.00 5.84 86.38 0.50 5.50 16 12 N -0.76 -35.15 5.24 -343.44 -1.80 -36.95 16 13 C -0.23 -12.91 10.47 84.04 0.88 -12.03 16 14 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 15 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 16 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 17 Si 0.95 47.87 27.74 68.60 1.90 49.77 16 18 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 19 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 20 H -0.26 -12.32 6.52 99.48 0.65 -11.67 16 21 C -0.09 -1.83 2.81 -10.07 -0.03 -1.86 16 22 C -0.12 -2.11 5.13 31.70 0.16 -1.95 16 23 C -0.12 -1.65 6.91 31.91 0.22 -1.43 16 24 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 25 C -0.11 -2.08 6.19 31.32 0.19 -1.89 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 28 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.42 9.53 7.44 -92.71 -0.69 8.84 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.41 8.76 6.96 -92.71 -0.65 8.11 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.48 7.13 -2.38 -0.02 1.46 16 35 H 0.36 16.87 4.67 -92.70 -0.43 16.44 16 36 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.16 5.96 -2.38 -0.01 1.14 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.05 1.09 7.12 -2.39 -0.02 1.07 16 Total: -1.00 -76.95 360.57 0.53 -76.41 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.82 Total: 36.82 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 5.28 Total: 15.53 kcal Atomic # 7 Polarization: -133.77 SS G_CDS: -5.74 Total: -139.51 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.10 Total: -39.02 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.77 kcal Total: -76.95 0.53 -76.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699787748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.591 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds