Wall clock time and date at job start Tue Mar 31 2020 03:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 119.99578 * 2 1 4 4 N 1.34768 * 120.00072 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99965 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99910 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99777 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99897 * 185.30595 * 8 6 5 10 10 H 1.09003 * 109.47076 * 355.20106 * 9 8 6 11 11 C 1.53005 * 109.47205 * 115.20135 * 9 8 6 12 12 N 1.46496 * 109.46754 * 304.99998 * 11 9 8 13 13 C 1.36940 * 119.99710 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00200 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00112 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00150 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00234 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46945 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47056 * 120.00417 * 17 15 13 20 20 H 1.48495 * 109.47596 * 240.00191 * 17 15 13 21 21 C 1.53004 * 109.47030 * 235.19986 * 9 8 6 22 22 C 1.54264 * 110.03364 * 180.41549 * 21 9 8 23 23 C 1.54887 * 104.19843 * 217.10557 * 22 21 9 24 24 C 1.54892 * 102.74581 * 37.94237 * 23 22 21 25 25 C 1.53874 * 110.02904 * 63.24900 * 21 9 8 26 26 H 1.08997 * 109.47048 * 239.99765 * 1 2 3 27 27 H 1.08996 * 109.47303 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46952 * 120.00206 * 1 2 3 29 29 H 0.97001 * 120.00582 * 0.02562 * 4 2 1 30 30 H 1.08994 * 109.47358 * 59.99557 * 5 4 2 31 31 H 1.09005 * 109.46708 * 300.00024 * 5 4 2 32 32 H 0.97000 * 119.99769 * 5.30342 * 8 6 5 33 33 H 1.08993 * 109.46787 * 184.99697 * 11 9 8 34 34 H 1.08996 * 109.47182 * 64.99875 * 11 9 8 35 35 H 0.97006 * 120.00459 * 359.97438 * 12 11 9 36 36 H 0.96999 * 120.00306 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.01473 * 301.86082 * 21 9 8 38 38 H 1.09001 * 110.48421 * 335.78439 * 22 21 9 39 39 H 1.09001 * 110.48548 * 98.42647 * 22 21 9 40 40 H 1.08996 * 110.75572 * 279.62803 * 23 22 21 41 41 H 1.08998 * 110.91342 * 156.32705 * 23 22 21 42 42 H 1.09000 * 110.48702 * 203.37820 * 24 23 22 43 43 H 1.09002 * 110.60371 * 80.79315 * 24 23 22 44 44 H 1.09005 * 110.02914 * 238.56269 * 25 21 9 45 45 H 1.08993 * 110.03882 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3603 -3.5097 0.0009 8 7 5.4734 -2.8341 0.0009 9 6 5.9628 -4.2100 -0.1165 10 1 5.1176 -4.8983 -0.1074 11 6 6.7340 -4.3667 -1.4287 12 7 5.8840 -3.9516 -2.5472 13 6 6.3638 -4.0057 -3.8287 14 1 7.3690 -4.3541 -4.0146 15 6 5.5583 -3.6129 -4.8886 16 7 4.3333 -3.1878 -4.6621 17 14 6.2130 -3.6861 -6.6366 18 1 7.6079 -4.1953 -6.6217 19 1 5.3630 -4.5959 -7.4459 20 1 6.1885 -2.3259 -7.2318 21 6 6.8891 -4.5240 1.0601 22 6 7.4205 -5.9675 0.9437 23 6 7.4638 -6.4755 2.4062 24 6 6.1881 -5.8502 3.0231 25 6 6.1054 -4.4494 2.3822 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.6960 -2.0072 0.0005 30 1 4.0090 -0.6530 0.8910 31 1 4.0096 -0.6534 -0.8889 32 1 6.1030 -2.1003 0.0786 33 1 7.0217 -5.4100 -1.5585 34 1 7.6282 -3.7440 -1.4012 35 1 4.9810 -3.6390 -2.3803 36 1 3.7705 -2.9130 -5.4027 37 1 7.7206 -3.8195 1.0786 38 1 6.7411 -6.5772 0.3480 39 1 8.4199 -5.9721 0.5085 40 1 8.3568 -6.1124 2.9150 41 1 7.4164 -7.5639 2.4416 42 1 6.2879 -5.7692 4.1055 43 1 5.3085 -6.4401 2.7652 44 1 6.5573 -3.7094 3.0428 45 1 5.0654 -4.1890 2.1857 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699787749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:20 Heat of formation + Delta-G solvation = -82.995356 kcal Electronic energy + Delta-G solvation = -24881.062857 eV Core-core repulsion = 21318.833169 eV Total energy + Delta-G solvation = -3562.229688 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14500 -39.22906 -38.04263 -35.39877 -34.24074 -33.59337 -31.42178 -30.39061 -29.67589 -28.64141 -27.01806 -25.96290 -23.29049 -21.56696 -20.55663 -20.47509 -20.26270 -19.66353 -17.50577 -17.16718 -16.55893 -15.95562 -15.82152 -15.63644 -15.23229 -14.92228 -14.53360 -14.41027 -13.67645 -13.48549 -13.31855 -13.18946 -12.90321 -12.69919 -12.59894 -12.53764 -12.12350 -11.93922 -11.45365 -11.26545 -11.07744 -11.00340 -10.92922 -10.82716 -10.66449 -10.53011 -10.32692 -10.04246 -9.89803 -9.72732 -9.65625 -9.06542 -8.89018 -8.65932 -6.91836 -5.75494 -3.04772 2.69229 2.85002 3.03997 3.43066 3.48347 3.50929 3.67413 4.53363 4.64025 4.67057 4.76541 4.83648 4.95962 5.21540 5.26105 5.32001 5.42517 5.47752 5.51079 5.55171 5.59683 5.62315 5.67841 5.70904 5.80982 5.86528 5.88699 5.97215 5.99922 6.10396 6.25814 6.29829 6.35087 6.38853 6.45649 6.48047 6.67178 6.91791 7.59160 7.69300 7.72958 8.28095 8.42252 8.43822 9.53956 10.11793 10.46610 11.46706 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.007008 B = 0.006705 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3994.354572 B = 4175.287572 C = 7751.101922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.554 6.554 4 N -0.714 5.714 5 C 0.099 3.901 6 C 0.518 3.482 7 O -0.539 6.539 8 N -0.707 5.707 9 C 0.138 3.862 10 H 0.101 0.899 11 C 0.142 3.858 12 N -0.729 5.729 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.929 5.929 17 Si 0.906 3.094 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.096 4.096 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.117 4.117 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.413 0.587 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.400 0.600 33 H 0.031 0.969 34 H 0.020 0.980 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 -0.422 16.623 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.432 6.432 4 N -0.369 5.369 5 C -0.028 4.028 6 C 0.303 3.697 7 O -0.416 6.416 8 N -0.356 5.356 9 C 0.034 3.966 10 H 0.119 0.881 11 C 0.013 3.987 12 N -0.374 5.374 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.116 4.116 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.155 4.155 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.251 0.749 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.234 0.766 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.092 -0.373 16.454 16.458 hybrid contribution 0.201 0.059 -1.108 1.127 sum 0.109 -0.314 15.346 15.350 Atomic orbital electron populations 1.21887 0.91438 1.05338 1.04497 1.20774 0.90703 0.83104 0.75479 1.90711 1.70917 1.31476 1.50121 1.45726 1.06134 1.09884 1.75147 1.21052 0.82281 0.94838 1.04645 1.20311 0.83054 0.90747 0.75564 1.90678 1.55065 1.45796 1.50099 1.45660 1.06389 1.09751 1.73844 1.21492 0.97631 0.83130 0.94366 0.88085 1.21054 0.93401 0.97692 0.86544 1.42302 1.14904 1.78730 1.01413 1.19250 0.97783 1.36603 0.83571 0.91206 1.24747 0.96182 1.02066 0.97908 1.69686 1.07628 1.50019 1.30426 0.86138 0.77835 0.77167 0.85158 1.20592 1.21888 1.21901 1.22066 0.97661 0.97687 0.94224 1.22389 1.01363 0.95125 0.96531 1.22490 0.97746 0.99890 0.96049 1.22354 0.98174 0.96467 0.99216 1.22161 1.00771 0.96872 0.95703 0.89451 0.89021 0.89082 0.74938 0.88986 0.87894 0.76638 0.95149 0.96265 0.78078 0.93616 0.90788 0.90905 0.91347 0.91810 0.91793 0.92218 0.91681 0.92307 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.32 36.01 0.37 -1.27 16 2 C 0.51 7.26 7.94 -10.99 -0.09 7.17 16 3 O -0.55 -9.95 17.09 5.56 0.09 -9.86 16 4 N -0.71 -10.07 5.53 -61.47 -0.34 -10.41 16 5 C 0.10 1.44 6.16 -5.19 -0.03 1.41 16 6 C 0.52 8.35 7.13 -10.98 -0.08 8.27 16 7 O -0.54 -10.26 15.01 5.56 0.08 -10.18 16 8 N -0.71 -10.35 4.00 -53.80 -0.22 -10.56 16 9 C 0.14 2.16 1.70 -67.93 -0.12 2.05 16 10 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 11 C 0.14 2.73 5.62 -4.04 -0.02 2.71 16 12 N -0.73 -18.33 5.43 -59.91 -0.33 -18.66 16 13 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 17 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 C -0.10 -1.16 2.71 -89.50 -0.24 -1.40 16 22 C -0.12 -1.33 5.34 -25.07 -0.13 -1.46 16 23 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16 24 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 25 C -0.12 -1.31 6.23 -25.61 -0.16 -1.47 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.41 5.60 7.44 -40.82 -0.30 5.29 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.40 4.94 8.83 -40.82 -0.36 4.58 16 33 H 0.03 0.59 7.23 -51.93 -0.38 0.22 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.39 10.42 6.81 -40.82 -0.28 10.14 16 36 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.93 7.58 -51.93 -0.39 0.53 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.87 7.33 -51.93 -0.38 0.49 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -34.73 367.44 -8.04 -42.77 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -7.49 Total: 15.69 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.09 Total: 5.80 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -0.16 Total: -67.34 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.73 -8.04 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699787749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.223 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds