Wall clock time and date at job start Tue Mar 31 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21279 * 119.99578 * 2 1 4 4 N 1.34768 * 120.00072 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99965 * 180.02562 * 4 2 1 6 6 C 1.50703 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99910 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99777 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99897 * 185.30595 * 8 6 5 10 10 H 1.09003 * 109.47076 * 355.20106 * 9 8 6 11 11 C 1.53005 * 109.47205 * 115.20135 * 9 8 6 12 12 N 1.46496 * 109.46754 * 304.99998 * 11 9 8 13 13 C 1.36940 * 119.99710 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00200 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00112 * 179.97438 * 13 12 11 16 16 N 1.31626 * 120.00150 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00234 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46945 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47056 * 120.00417 * 17 15 13 20 20 H 1.48495 * 109.47596 * 240.00191 * 17 15 13 21 21 C 1.53004 * 109.47030 * 235.19986 * 9 8 6 22 22 C 1.54264 * 110.03364 * 180.41549 * 21 9 8 23 23 C 1.54887 * 104.19843 * 217.10557 * 22 21 9 24 24 C 1.54892 * 102.74581 * 37.94237 * 23 22 21 25 25 C 1.53874 * 110.02904 * 63.24900 * 21 9 8 26 26 H 1.08997 * 109.47048 * 239.99765 * 1 2 3 27 27 H 1.08996 * 109.47303 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46952 * 120.00206 * 1 2 3 29 29 H 0.97001 * 120.00582 * 0.02562 * 4 2 1 30 30 H 1.08994 * 109.47358 * 59.99557 * 5 4 2 31 31 H 1.09005 * 109.46708 * 300.00024 * 5 4 2 32 32 H 0.97000 * 119.99769 * 5.30342 * 8 6 5 33 33 H 1.08993 * 109.46787 * 184.99697 * 11 9 8 34 34 H 1.08996 * 109.47182 * 64.99875 * 11 9 8 35 35 H 0.97006 * 120.00459 * 359.97438 * 12 11 9 36 36 H 0.96999 * 120.00306 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.01473 * 301.86082 * 21 9 8 38 38 H 1.09001 * 110.48421 * 335.78439 * 22 21 9 39 39 H 1.09001 * 110.48548 * 98.42647 * 22 21 9 40 40 H 1.08996 * 110.75572 * 279.62803 * 23 22 21 41 41 H 1.08998 * 110.91342 * 156.32705 * 23 22 21 42 42 H 1.09000 * 110.48702 * 203.37820 * 24 23 22 43 43 H 1.09002 * 110.60371 * 80.79315 * 24 23 22 44 44 H 1.09005 * 110.02914 * 238.56269 * 25 21 9 45 45 H 1.08993 * 110.03882 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3603 -3.5097 0.0009 8 7 5.4734 -2.8341 0.0009 9 6 5.9628 -4.2100 -0.1165 10 1 5.1176 -4.8983 -0.1074 11 6 6.7340 -4.3667 -1.4287 12 7 5.8840 -3.9516 -2.5472 13 6 6.3638 -4.0057 -3.8287 14 1 7.3690 -4.3541 -4.0146 15 6 5.5583 -3.6129 -4.8886 16 7 4.3333 -3.1878 -4.6621 17 14 6.2130 -3.6861 -6.6366 18 1 7.6079 -4.1953 -6.6217 19 1 5.3630 -4.5959 -7.4459 20 1 6.1885 -2.3259 -7.2318 21 6 6.8891 -4.5240 1.0601 22 6 7.4205 -5.9675 0.9437 23 6 7.4638 -6.4755 2.4062 24 6 6.1881 -5.8502 3.0231 25 6 6.1054 -4.4494 2.3822 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.6960 -2.0072 0.0005 30 1 4.0090 -0.6530 0.8910 31 1 4.0096 -0.6534 -0.8889 32 1 6.1030 -2.1003 0.0786 33 1 7.0217 -5.4100 -1.5585 34 1 7.6282 -3.7440 -1.4012 35 1 4.9810 -3.6390 -2.3803 36 1 3.7705 -2.9130 -5.4027 37 1 7.7206 -3.8195 1.0786 38 1 6.7411 -6.5772 0.3480 39 1 8.4199 -5.9721 0.5085 40 1 8.3568 -6.1124 2.9150 41 1 7.4164 -7.5639 2.4416 42 1 6.2879 -5.7692 4.1055 43 1 5.3085 -6.4401 2.7652 44 1 6.5573 -3.7094 3.0428 45 1 5.0654 -4.1890 2.1857 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699787749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:19 Heat of formation + Delta-G solvation = -108.800411 kcal Electronic energy + Delta-G solvation = -24882.181848 eV Core-core repulsion = 21318.833169 eV Total energy + Delta-G solvation = -3563.348679 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40597 -40.39959 -39.15831 -36.88861 -35.52592 -35.25189 -33.14428 -31.64021 -30.87651 -29.54231 -28.13123 -27.51588 -25.07148 -23.00163 -21.80761 -21.61514 -21.26570 -20.70258 -19.25821 -18.60588 -17.78296 -17.16963 -17.06066 -16.72778 -16.68366 -16.12802 -16.06780 -15.59727 -15.19792 -14.99384 -14.86079 -14.23780 -14.15115 -13.97898 -13.87351 -13.56577 -13.32367 -13.01105 -12.93598 -12.89387 -12.64431 -12.23675 -12.10597 -11.92296 -11.88891 -11.82442 -11.65540 -11.43439 -11.34293 -11.09904 -11.05857 -10.89755 -10.26941 -9.96410 -9.00170 -7.95424 -5.24443 1.45238 1.45893 1.50118 1.55950 1.61778 1.87903 2.50909 2.54818 3.38288 3.52067 3.66640 3.75278 3.83780 3.93869 4.16121 4.22660 4.27523 4.35666 4.40499 4.55234 4.59257 4.62178 4.66569 4.73763 4.76025 4.85007 4.89509 4.93169 5.05025 5.05968 5.12479 5.15878 5.27722 5.29998 5.34444 5.48058 5.48629 5.53705 5.62269 6.25235 6.47296 6.49741 7.15611 7.18686 7.32279 8.08968 8.31166 9.27607 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.007008 B = 0.006705 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3994.354572 B = 4175.287572 C = 7751.101922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.104 3.896 6 C 0.516 3.484 7 O -0.572 6.572 8 N -0.698 5.698 9 C 0.151 3.849 10 H 0.071 0.929 11 C 0.140 3.860 12 N -0.743 5.743 13 C -0.242 4.242 14 H 0.078 0.922 15 C -0.076 4.076 16 N -0.968 5.968 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.296 1.296 20 H -0.295 1.295 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.113 4.113 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.416 0.584 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.413 0.587 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -0.618 17.853 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.296 3.704 3 O -0.478 6.478 4 N -0.369 5.369 5 C -0.024 4.024 6 C 0.303 3.697 7 O -0.451 6.451 8 N -0.348 5.348 9 C 0.046 3.954 10 H 0.089 0.911 11 C 0.012 3.988 12 N -0.385 5.385 13 C -0.374 4.374 14 H 0.096 0.904 15 C -0.269 4.269 16 N -0.619 5.619 17 Si 0.801 3.199 18 H -0.188 1.188 19 H -0.223 1.223 20 H -0.222 1.222 21 C -0.108 4.108 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.151 4.151 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.254 0.746 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.204 0.796 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.264 -0.593 17.716 17.770 hybrid contribution -0.164 0.069 -1.448 1.459 sum 1.100 -0.524 16.268 16.313 Atomic orbital electron populations 1.21924 0.87628 1.06407 1.06346 1.21638 0.92525 0.82177 0.74101 1.90686 1.72162 1.32776 1.52217 1.45833 1.05992 1.10246 1.74800 1.21015 0.82885 0.93588 1.04922 1.20593 0.83222 0.91031 0.74898 1.90658 1.55940 1.46868 1.51677 1.45594 1.06308 1.09942 1.72994 1.21280 0.96829 0.82999 0.94256 0.91075 1.21259 0.93408 0.97609 0.86487 1.42519 1.15019 1.78795 1.02199 1.19677 0.97912 1.34941 0.84871 0.90420 1.25566 0.96577 1.02812 1.01903 1.69854 1.09001 1.51881 1.31116 0.85090 0.77874 0.76667 0.80222 1.18791 1.22338 1.22186 1.22033 0.97300 0.98561 0.92865 1.22416 1.01182 0.94384 0.97802 1.22467 0.98057 1.00361 0.94520 1.22361 0.98018 0.95568 1.00272 1.22116 0.99365 0.98109 0.95481 0.86668 0.88384 0.87935 0.74597 0.86534 0.89626 0.75120 0.94972 0.94885 0.79578 0.94275 0.88986 0.92855 0.90535 0.90125 0.91086 0.90457 0.92967 0.90448 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.32 71.24 0.74 -2.15 16 2 C 0.51 14.24 7.94 87.66 0.70 14.93 16 3 O -0.60 -21.63 17.09 -3.03 -0.05 -21.68 16 4 N -0.71 -20.29 5.53 -466.78 -2.58 -22.87 16 5 C 0.10 3.04 6.16 85.63 0.53 3.57 16 6 C 0.52 16.96 7.13 87.66 0.63 17.59 16 7 O -0.57 -22.50 15.01 -3.01 -0.05 -22.55 16 8 N -0.70 -20.37 4.00 -442.52 -1.77 -22.14 16 9 C 0.15 4.71 1.70 44.99 0.08 4.79 16 10 H 0.07 2.69 6.91 -2.39 -0.02 2.67 16 11 C 0.14 5.31 5.62 86.38 0.49 5.80 16 12 N -0.74 -37.71 5.43 -343.46 -1.87 -39.57 16 13 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 14 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 16 N -0.97 -60.49 13.06 21.65 0.28 -60.20 16 17 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 20 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 21 C -0.09 -1.97 2.71 -10.07 -0.03 -2.00 16 22 C -0.12 -2.55 5.34 31.67 0.17 -2.38 16 23 C -0.12 -1.98 6.91 31.89 0.22 -1.76 16 24 C -0.12 -2.30 6.83 31.67 0.22 -2.09 16 25 C -0.11 -2.33 6.23 31.32 0.20 -2.14 16 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.63 8.12 -2.39 -0.02 1.61 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.42 11.39 7.44 -92.71 -0.69 10.70 16 30 H 0.12 2.80 8.14 -2.39 -0.02 2.79 16 31 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 32 H 0.41 9.83 8.83 -92.71 -0.82 9.01 16 33 H 0.03 1.24 7.23 -2.39 -0.02 1.22 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.37 20.67 6.81 -92.70 -0.63 20.04 16 36 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.34 7.58 -2.39 -0.02 1.32 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.04 1.14 7.33 -2.39 -0.02 1.12 16 Total: -1.00 -76.10 367.44 0.09 -76.01 By element: Atomic # 1 Polarization: 47.89 SS G_CDS: -1.13 Total: 46.76 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 5.22 Total: 17.47 kcal Atomic # 7 Polarization: -138.85 SS G_CDS: -5.93 Total: -144.78 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.10 Total: -44.23 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.10 0.09 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699787749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.789 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds