Wall clock time and date at job start Tue Mar 31 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36931 * 119.99721 * 2 1 4 4 H 1.08000 * 119.99890 * 203.04254 * 3 2 1 5 5 C 1.38816 * 120.00631 * 23.04765 * 3 2 1 6 6 N 1.31620 * 119.99786 * 12.92390 * 5 3 2 7 7 Si 1.86793 * 120.00126 * 192.93041 * 5 3 2 8 8 H 1.48497 * 109.47623 * 89.99834 * 7 5 3 9 9 H 1.48507 * 109.47027 * 209.99474 * 7 5 3 10 10 H 1.48495 * 109.47355 * 329.99427 * 7 5 3 11 11 C 1.46496 * 119.99843 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46852 * 90.00095 * 11 2 1 13 13 N 1.46495 * 109.47388 * 179.97438 * 12 11 2 14 14 C 1.34777 * 120.00220 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00470 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99976 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.63330 * 60.39665 * 16 14 13 18 18 C 1.53064 * 109.63042 * 180.99720 * 16 14 13 19 19 C 1.51878 * 110.73424 * 204.59968 * 18 16 14 20 20 C 1.51774 * 113.82856 * 293.22778 * 19 18 16 21 21 C 1.52990 * 110.88021 * 66.96974 * 20 19 18 22 22 N 1.47198 * 108.66049 * 273.53692 * 21 20 19 23 23 C 1.46501 * 119.78337 * 251.96424 * 22 21 20 24 24 C 1.33367 * 120.43407 * 71.99452 * 22 21 20 25 25 O 1.21286 * 119.89502 * 179.68070 * 24 22 21 26 26 H 1.09006 * 109.46638 * 275.12495 * 1 2 3 27 27 H 1.09000 * 109.46967 * 35.12310 * 1 2 3 28 28 H 1.08996 * 109.47010 * 155.12575 * 1 2 3 29 29 H 0.96996 * 120.00145 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.47668 * 330.00444 * 11 2 1 31 31 H 1.08998 * 109.47185 * 209.99694 * 11 2 1 32 32 H 1.09002 * 109.47518 * 300.00143 * 12 11 2 33 33 H 1.09001 * 109.47203 * 59.99895 * 12 11 2 34 34 H 0.96997 * 120.00105 * 0.02562 * 13 12 11 35 35 H 1.08993 * 109.22671 * 324.94860 * 18 16 14 36 36 H 1.09001 * 109.22082 * 84.30024 * 18 16 14 37 37 H 1.09007 * 108.62953 * 172.08478 * 19 18 16 38 38 H 1.08997 * 108.46861 * 54.25919 * 19 18 16 39 39 H 1.08998 * 109.19850 * 306.60275 * 20 19 18 40 40 H 1.09002 * 109.19687 * 187.32205 * 20 19 18 41 41 H 1.08992 * 109.60772 * 153.78120 * 21 20 19 42 42 H 1.09003 * 109.74154 * 33.36207 * 21 20 19 43 43 H 1.08994 * 109.47431 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.47147 * 300.02539 * 23 22 21 45 45 H 1.08998 * 109.47015 * 60.02276 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2598 1.1458 7 14 2.3160 4.0073 0.1455 8 1 1.7989 4.5534 -1.1349 9 1 1.9759 4.9364 1.2530 10 1 3.7909 3.8577 0.0601 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1855 -2.9794 -1.4413 14 6 3.5229 -3.5631 -2.6083 15 8 3.2194 -3.0386 -3.6588 16 6 4.2765 -4.8682 -2.6078 17 1 3.6863 -5.6317 -2.1008 18 6 4.5560 -5.3012 -4.0491 19 6 4.7436 -6.8061 -4.1316 20 6 5.9899 -7.3082 -3.4258 21 6 5.8764 -7.1114 -1.9129 22 7 6.3400 -5.7550 -1.5783 23 6 7.6220 -5.5724 -0.8933 24 6 5.6002 -4.6912 -1.8941 25 8 5.9889 -3.5783 -1.6086 26 1 -0.3633 0.0918 1.0236 27 1 -0.3633 0.8406 -0.5913 28 1 -0.3633 -0.9323 -0.4323 29 1 -0.0149 3.0663 1.4750 30 1 1.6085 -2.0282 0.5146 31 1 3.1500 -1.1382 0.5143 32 1 1.5001 -1.8415 -1.9556 33 1 3.0416 -0.9515 -1.9559 34 1 3.4280 -3.3991 -0.6012 35 1 3.7173 -5.0086 -4.6808 36 1 5.4607 -4.8070 -4.4032 37 1 4.7990 -7.0930 -5.1818 38 1 3.8733 -7.2876 -3.6858 39 1 6.8564 -6.7594 -3.7947 40 1 6.1206 -8.3689 -3.6403 41 1 6.4970 -7.8467 -1.4008 42 1 4.8381 -7.2298 -1.6031 43 1 7.7980 -4.5094 -0.7288 44 1 7.5983 -6.0894 0.0661 45 1 8.4237 -5.9827 -1.5073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753071018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:30 Heat of formation + Delta-G solvation = -50.252668 kcal Electronic energy + Delta-G solvation = -24806.413696 eV Core-core repulsion = 21245.603837 eV Total energy + Delta-G solvation = -3560.809859 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06105 -38.94305 -37.04993 -36.02821 -34.79565 -34.06679 -31.72622 -31.14858 -28.95661 -27.98025 -26.11236 -25.75699 -24.33282 -23.08587 -21.07430 -20.69173 -20.51324 -18.96918 -17.80577 -17.37645 -16.63283 -16.06396 -15.78756 -15.42453 -15.00528 -14.64660 -14.53393 -14.29771 -13.96012 -13.69012 -13.45643 -13.34298 -13.17345 -12.87210 -12.53683 -12.40821 -12.30690 -12.19866 -11.88413 -11.38458 -11.15476 -11.10362 -11.01241 -10.81769 -10.81112 -10.53248 -10.28481 -9.93293 -9.90088 -9.86065 -9.64255 -9.03731 -8.59288 -8.50040 -6.73600 -5.68415 -3.16079 2.38309 2.46986 3.00562 3.41150 3.44667 3.50054 3.52964 4.15221 4.28297 4.34279 4.49404 4.57686 4.68087 4.88091 4.96134 4.98360 5.06944 5.14031 5.19960 5.30322 5.45535 5.50417 5.56493 5.62795 5.67797 5.70055 5.88988 5.90656 5.99661 6.02109 6.10677 6.33336 6.68467 6.76372 6.81831 6.97405 7.00626 7.41326 7.75564 7.81846 7.87033 7.91619 8.42638 8.49454 9.27612 9.89706 10.37890 11.36569 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.003123 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.628866 B = 8964.263901 C = 9343.353174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.257 4.257 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.097 3.903 13 N -0.710 5.710 14 C 0.531 3.469 15 O -0.539 6.539 16 C -0.128 4.128 17 H 0.117 0.883 18 C -0.099 4.099 19 C -0.122 4.122 20 C -0.142 4.142 21 C 0.108 3.892 22 N -0.612 5.612 23 C 0.077 3.923 24 C 0.521 3.479 25 O -0.524 6.524 26 H 0.033 0.967 27 H 0.042 0.958 28 H -0.002 1.002 29 H 0.252 0.748 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.818 -25.334 -5.911 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.387 4.387 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.359 5.359 14 C 0.315 3.685 15 O -0.416 6.416 16 C -0.153 4.153 17 H 0.135 0.865 18 C -0.137 4.137 19 C -0.160 4.160 20 C -0.180 4.180 21 C -0.015 4.015 22 N -0.347 5.347 23 C -0.066 4.066 24 C 0.308 3.692 25 O -0.399 6.399 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.672 -24.160 -6.400 27.176 hybrid contribution 0.524 0.600 0.269 0.841 sum 11.196 -23.559 -6.131 26.795 Atomic orbital electron populations 1.20836 0.82359 0.95552 0.99569 1.43786 1.01919 1.00344 1.85966 1.19242 0.98398 0.85509 1.35522 0.91259 1.25022 0.97876 0.98585 0.98063 1.70074 1.19477 1.27207 1.38553 0.86222 0.78875 0.83919 0.77368 1.21419 1.21755 1.20389 1.20832 0.96715 0.89047 0.91827 1.22402 0.95339 0.83129 1.02011 1.45911 1.57336 1.24949 1.07710 1.19658 0.79179 0.85303 0.84358 1.90688 1.55257 1.64420 1.31238 1.21771 0.94914 0.98783 0.99809 0.86508 1.21166 1.04303 0.95356 0.92925 1.21213 0.97916 0.95313 1.01514 1.21832 0.99272 1.01997 0.94924 1.21876 1.00951 0.82900 0.95735 1.47679 1.21343 1.06608 1.59021 1.21741 0.83992 1.04564 0.96279 1.20050 0.85924 0.84521 0.78724 1.90822 1.71945 1.23976 1.53176 0.94900 0.93948 0.98308 0.93763 0.94225 0.92885 0.92239 0.91507 0.77216 0.88681 0.91261 0.91076 0.91571 0.91102 0.90392 0.89399 0.90340 0.89178 0.92029 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 8.98 59.85 0.54 4.64 16 2 N -0.60 -15.65 2.92 -181.12 -0.53 -16.17 16 3 C -0.26 -7.39 9.65 -15.06 -0.15 -7.54 16 4 H 0.07 1.98 7.86 -52.49 -0.41 1.57 16 5 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 6 N -0.91 -27.16 10.71 55.49 0.59 -26.56 16 7 Si 0.91 22.74 29.57 -169.99 -5.03 17.71 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 C 0.14 3.06 5.76 -4.04 -0.02 3.04 16 12 C 0.10 1.94 6.00 -4.05 -0.02 1.91 16 13 N -0.71 -11.70 5.14 -60.30 -0.31 -12.01 16 14 C 0.53 8.72 6.57 -10.98 -0.07 8.65 16 15 O -0.54 -10.85 15.49 5.56 0.09 -10.77 16 16 C -0.13 -1.46 2.23 -92.53 -0.21 -1.66 16 17 H 0.12 0.95 6.79 -51.93 -0.35 0.60 16 18 C -0.10 -1.00 4.81 -27.27 -0.13 -1.13 16 19 C -0.12 -0.75 5.28 -27.92 -0.15 -0.90 16 20 C -0.14 -0.70 5.74 -27.36 -0.16 -0.86 16 21 C 0.11 0.54 5.91 -3.67 -0.02 0.52 16 22 N -0.61 -5.28 2.85 -181.11 -0.52 -5.79 16 23 C 0.08 0.58 10.59 59.85 0.63 1.21 16 24 C 0.52 6.43 6.50 -11.25 -0.07 6.35 16 25 O -0.52 -8.86 15.09 5.55 0.08 -8.77 16 26 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 27 H 0.04 1.15 7.34 -51.93 -0.38 0.77 16 28 H 0.00 -0.04 8.03 -51.93 -0.42 -0.45 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.39 5.54 8.37 -40.82 -0.34 5.20 16 35 H 0.09 1.09 7.11 -51.93 -0.37 0.72 16 36 H 0.07 0.79 7.86 -51.93 -0.41 0.39 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.33 7.88 -51.93 -0.41 -0.08 16 39 H 0.07 0.45 8.05 -51.93 -0.42 0.03 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.27 7.96 -51.93 -0.41 -0.15 16 42 H 0.08 0.33 6.73 -51.93 -0.35 -0.02 16 43 H 0.09 0.91 6.85 -51.93 -0.36 0.55 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -36.03 357.66 -7.67 -43.69 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.52 Total: -0.95 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 0.08 Total: 14.24 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.76 Total: -60.54 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.17 Total: -19.54 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.03 -7.67 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753071018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds