Wall clock time and date at job start Tue Mar 31 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36931 * 119.99721 * 2 1 4 4 H 1.08000 * 119.99890 * 203.04254 * 3 2 1 5 5 C 1.38816 * 120.00631 * 23.04765 * 3 2 1 6 6 N 1.31620 * 119.99786 * 12.92390 * 5 3 2 7 7 Si 1.86793 * 120.00126 * 192.93041 * 5 3 2 8 8 H 1.48497 * 109.47623 * 89.99834 * 7 5 3 9 9 H 1.48507 * 109.47027 * 209.99474 * 7 5 3 10 10 H 1.48495 * 109.47355 * 329.99427 * 7 5 3 11 11 C 1.46496 * 119.99843 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46852 * 90.00095 * 11 2 1 13 13 N 1.46495 * 109.47388 * 179.97438 * 12 11 2 14 14 C 1.34777 * 120.00220 * 180.02562 * 13 12 11 15 15 O 1.21277 * 120.00470 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99976 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.63330 * 60.39665 * 16 14 13 18 18 C 1.53064 * 109.63042 * 180.99720 * 16 14 13 19 19 C 1.51878 * 110.73424 * 204.59968 * 18 16 14 20 20 C 1.51774 * 113.82856 * 293.22778 * 19 18 16 21 21 C 1.52990 * 110.88021 * 66.96974 * 20 19 18 22 22 N 1.47198 * 108.66049 * 273.53692 * 21 20 19 23 23 C 1.46501 * 119.78337 * 251.96424 * 22 21 20 24 24 C 1.33367 * 120.43407 * 71.99452 * 22 21 20 25 25 O 1.21286 * 119.89502 * 179.68070 * 24 22 21 26 26 H 1.09006 * 109.46638 * 275.12495 * 1 2 3 27 27 H 1.09000 * 109.46967 * 35.12310 * 1 2 3 28 28 H 1.08996 * 109.47010 * 155.12575 * 1 2 3 29 29 H 0.96996 * 120.00145 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.47668 * 330.00444 * 11 2 1 31 31 H 1.08998 * 109.47185 * 209.99694 * 11 2 1 32 32 H 1.09002 * 109.47518 * 300.00143 * 12 11 2 33 33 H 1.09001 * 109.47203 * 59.99895 * 12 11 2 34 34 H 0.96997 * 120.00105 * 0.02562 * 13 12 11 35 35 H 1.08993 * 109.22671 * 324.94860 * 18 16 14 36 36 H 1.09001 * 109.22082 * 84.30024 * 18 16 14 37 37 H 1.09007 * 108.62953 * 172.08478 * 19 18 16 38 38 H 1.08997 * 108.46861 * 54.25919 * 19 18 16 39 39 H 1.08998 * 109.19850 * 306.60275 * 20 19 18 40 40 H 1.09002 * 109.19687 * 187.32205 * 20 19 18 41 41 H 1.08992 * 109.60772 * 153.78120 * 21 20 19 42 42 H 1.09003 * 109.74154 * 33.36207 * 21 20 19 43 43 H 1.08994 * 109.47431 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.47147 * 300.02539 * 23 22 21 45 45 H 1.08998 * 109.47015 * 60.02276 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2598 1.1458 7 14 2.3160 4.0073 0.1455 8 1 1.7989 4.5534 -1.1349 9 1 1.9759 4.9364 1.2530 10 1 3.7909 3.8577 0.0601 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1855 -2.9794 -1.4413 14 6 3.5229 -3.5631 -2.6083 15 8 3.2194 -3.0386 -3.6588 16 6 4.2765 -4.8682 -2.6078 17 1 3.6863 -5.6317 -2.1008 18 6 4.5560 -5.3012 -4.0491 19 6 4.7436 -6.8061 -4.1316 20 6 5.9899 -7.3082 -3.4258 21 6 5.8764 -7.1114 -1.9129 22 7 6.3400 -5.7550 -1.5783 23 6 7.6220 -5.5724 -0.8933 24 6 5.6002 -4.6912 -1.8941 25 8 5.9889 -3.5783 -1.6086 26 1 -0.3633 0.0918 1.0236 27 1 -0.3633 0.8406 -0.5913 28 1 -0.3633 -0.9323 -0.4323 29 1 -0.0149 3.0663 1.4750 30 1 1.6085 -2.0282 0.5146 31 1 3.1500 -1.1382 0.5143 32 1 1.5001 -1.8415 -1.9556 33 1 3.0416 -0.9515 -1.9559 34 1 3.4280 -3.3991 -0.6012 35 1 3.7173 -5.0086 -4.6808 36 1 5.4607 -4.8070 -4.4032 37 1 4.7990 -7.0930 -5.1818 38 1 3.8733 -7.2876 -3.6858 39 1 6.8564 -6.7594 -3.7947 40 1 6.1206 -8.3689 -3.6403 41 1 6.4970 -7.8467 -1.4008 42 1 4.8381 -7.2298 -1.6031 43 1 7.7980 -4.5094 -0.7288 44 1 7.5983 -6.0894 0.0661 45 1 8.4237 -5.9827 -1.5073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753071018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:29 Heat of formation + Delta-G solvation = -76.217764 kcal Electronic energy + Delta-G solvation = -24807.539627 eV Core-core repulsion = 21245.603837 eV Total energy + Delta-G solvation = -3561.935790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01655 -40.18972 -37.98336 -37.74373 -35.78898 -35.53395 -33.36463 -32.36984 -30.06213 -29.17940 -27.95043 -26.92846 -25.29822 -24.55967 -22.44285 -22.08569 -21.45166 -19.98475 -18.82443 -18.61313 -18.31335 -17.37612 -16.85719 -16.63799 -16.33410 -16.29953 -15.57296 -15.31386 -15.15420 -14.92603 -14.76549 -14.53146 -14.31449 -14.10321 -13.98134 -13.57270 -13.25476 -13.08855 -13.02336 -12.82884 -12.71304 -12.58973 -12.50197 -12.21040 -12.00605 -11.96569 -11.83231 -11.67247 -11.53082 -11.06603 -10.89906 -10.69016 -10.09791 -9.72685 -8.86811 -7.88257 -5.38769 1.37353 1.43004 1.45056 1.48589 1.53828 2.04424 2.16939 2.49691 3.24876 3.33590 3.49509 3.66812 3.77451 3.89608 4.08639 4.16148 4.19592 4.25533 4.32546 4.43841 4.48003 4.60311 4.66157 4.69539 4.78105 4.79861 4.96778 5.00670 5.04306 5.05903 5.08010 5.21086 5.26513 5.29918 5.44602 5.45045 5.51991 5.58751 5.67211 6.26136 6.27963 6.49556 7.04952 7.09965 7.17825 7.79726 8.22100 9.14684 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.003123 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.628866 B = 8964.263901 C = 9343.353174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.272 4.272 4 H 0.063 0.937 5 C -0.047 4.047 6 N -0.933 5.933 7 Si 0.968 3.032 8 H -0.286 1.286 9 H -0.287 1.287 10 H -0.272 1.272 11 C 0.149 3.851 12 C 0.118 3.882 13 N -0.703 5.703 14 C 0.524 3.476 15 O -0.583 6.583 16 C -0.116 4.116 17 H 0.160 0.840 18 C -0.096 4.096 19 C -0.117 4.117 20 C -0.138 4.138 21 C 0.099 3.901 22 N -0.602 5.602 23 C 0.073 3.927 24 C 0.517 3.483 25 O -0.583 6.583 26 H 0.013 0.987 27 H 0.014 0.986 28 H 0.034 0.966 29 H 0.251 0.749 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.409 0.591 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -28.741 -5.652 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.402 4.402 4 H 0.080 0.920 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.796 3.204 8 H -0.213 1.213 9 H -0.213 1.213 10 H -0.197 1.197 11 C 0.022 3.978 12 C -0.009 4.009 13 N -0.353 5.353 14 C 0.310 3.690 15 O -0.463 6.463 16 C -0.140 4.140 17 H 0.177 0.823 18 C -0.134 4.134 19 C -0.154 4.154 20 C -0.176 4.176 21 C -0.022 4.022 22 N -0.333 5.333 23 C -0.069 4.069 24 C 0.304 3.696 25 O -0.464 6.464 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.512 -27.672 -6.130 30.592 hybrid contribution 0.328 1.548 0.155 1.590 sum 11.839 -26.124 -5.975 29.298 Atomic orbital electron populations 1.20617 0.82198 0.96149 0.98099 1.44012 1.02397 1.01331 1.86184 1.19465 0.98415 0.87045 1.35281 0.91961 1.25760 0.98579 1.01763 0.98162 1.70210 1.20556 1.27818 1.39366 0.85255 0.78282 0.79785 0.77056 1.21289 1.21345 1.19734 1.20902 0.96494 0.87882 0.92493 1.21844 0.94674 0.83930 1.00464 1.45753 1.56970 1.23716 1.08848 1.20570 0.78468 0.86660 0.83306 1.90664 1.56893 1.66053 1.32698 1.21757 0.94555 0.96525 1.01179 0.82303 1.21160 1.02355 0.98396 0.91496 1.21208 0.99639 0.91886 1.02703 1.21818 0.97743 1.03491 0.94514 1.22291 1.02682 0.81086 0.96163 1.47819 1.20915 1.07277 1.57308 1.21859 0.84065 1.03049 0.97920 1.20165 0.86303 0.84595 0.78535 1.90803 1.73277 1.26365 1.55945 0.96843 0.96704 0.94783 0.93988 0.91215 0.93314 0.92885 0.95312 0.75526 0.90512 0.93645 0.90273 0.89346 0.92740 0.87353 0.86347 0.88569 0.92394 0.89482 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.91 8.98 127.77 1.15 10.06 16 2 N -0.62 -32.61 2.92 -726.93 -2.12 -34.74 16 3 C -0.27 -15.93 9.65 84.04 0.81 -15.12 16 4 H 0.06 3.65 7.86 -2.91 -0.02 3.63 16 5 C -0.05 -2.76 5.10 84.86 0.43 -2.32 16 6 N -0.93 -56.67 10.71 21.65 0.23 -56.44 16 7 Si 0.97 47.43 29.57 68.60 2.03 49.46 16 8 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 9 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 11 C 0.15 6.32 5.76 86.38 0.50 6.82 16 12 C 0.12 4.80 6.00 86.38 0.52 5.32 16 13 N -0.70 -23.11 5.14 -463.07 -2.38 -25.49 16 14 C 0.52 17.31 6.57 87.66 0.58 17.88 16 15 O -0.58 -24.33 15.49 -3.02 -0.05 -24.37 16 16 C -0.12 -2.48 2.23 -12.03 -0.03 -2.51 16 17 H 0.16 1.99 6.79 -2.39 -0.02 1.97 16 18 C -0.10 -1.84 4.81 30.25 0.15 -1.69 16 19 C -0.12 -1.05 5.28 29.82 0.16 -0.89 16 20 C -0.14 -0.80 5.74 30.19 0.17 -0.62 16 21 C 0.10 0.53 5.91 86.24 0.51 1.04 16 22 N -0.60 -8.86 2.85 -846.07 -2.42 -11.27 16 23 C 0.07 0.96 10.59 127.77 1.35 2.31 16 24 C 0.52 12.29 6.50 88.11 0.57 12.87 16 25 O -0.58 -20.29 15.09 -3.05 -0.05 -20.34 16 26 H 0.01 0.73 7.34 -2.38 -0.02 0.71 16 27 H 0.01 0.80 7.34 -2.39 -0.02 0.78 16 28 H 0.03 1.47 8.03 -2.39 -0.02 1.45 16 29 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 31 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.41 11.08 8.37 -92.71 -0.78 10.31 16 35 H 0.08 1.77 7.11 -2.39 -0.02 1.75 16 36 H 0.04 1.07 7.86 -2.39 -0.02 1.05 16 37 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.09 0.46 7.88 -2.39 -0.02 0.44 16 39 H 0.05 0.53 8.05 -2.39 -0.02 0.52 16 40 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 42 H 0.10 0.26 6.73 -2.39 -0.02 0.24 16 43 H 0.06 1.17 6.85 -2.39 -0.02 1.16 16 44 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -82.72 357.66 2.32 -80.41 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.20 Total: 9.66 kcal Atomic # 6 Polarization: 26.26 SS G_CDS: 6.87 Total: 33.13 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -6.69 Total: -127.93 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -0.09 Total: -44.71 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -82.72 2.32 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753071018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.188 kcal (2) G-P(sol) polarization free energy of solvation -82.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds