Wall clock time and date at job start Tue Mar 31 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 120.00136 * 2 1 4 4 N 1.34780 * 119.99623 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00164 * 359.97438 * 4 2 1 6 6 C 1.46503 * 119.99731 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.47210 * 270.00265 * 6 4 2 8 8 O 1.21277 * 119.99844 * 359.97438 * 7 6 4 9 9 N 1.34772 * 119.99754 * 180.02562 * 7 6 4 10 10 C 1.47022 * 125.65072 * 359.68545 * 9 7 6 11 11 C 1.54315 * 107.27603 * 180.97300 * 10 9 7 12 12 C 1.55153 * 102.86715 * 22.52548 * 11 10 9 13 13 H 1.08999 * 111.03538 * 82.39105 * 12 11 10 14 14 C 1.52995 * 111.00602 * 206.23096 * 12 11 10 15 15 N 1.46497 * 109.47184 * 287.19525 * 14 12 11 16 16 C 1.46500 * 119.99995 * 90.00012 * 15 14 12 17 17 C 1.36944 * 120.00016 * 270.00460 * 15 14 12 18 18 H 1.07997 * 119.99713 * 23.21997 * 17 15 14 19 19 C 1.38816 * 119.99984 * 203.22781 * 17 15 14 20 20 N 1.31622 * 119.99980 * 13.88066 * 19 17 15 21 21 Si 1.86792 * 120.00068 * 193.88303 * 19 17 15 22 22 H 1.48504 * 109.47070 * 89.99803 * 21 19 17 23 23 H 1.48494 * 109.47387 * 209.99750 * 21 19 17 24 24 H 1.48503 * 109.47448 * 330.00114 * 21 19 17 25 25 C 1.47429 * 125.64794 * 180.02562 * 9 7 6 26 26 H 1.09002 * 109.46846 * 239.99646 * 1 2 3 27 27 H 1.08999 * 109.46808 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47285 * 119.99373 * 1 2 3 29 29 H 1.09004 * 109.47059 * 269.99757 * 5 4 2 30 30 H 1.08999 * 109.47386 * 29.99480 * 5 4 2 31 31 H 1.09002 * 109.47534 * 150.00416 * 5 4 2 32 32 H 1.09004 * 109.46915 * 149.99681 * 6 4 2 33 33 H 1.09005 * 109.46723 * 29.99933 * 6 4 2 34 34 H 1.09001 * 109.88588 * 300.51353 * 10 9 7 35 35 H 1.08998 * 109.88689 * 61.68242 * 10 9 7 36 36 H 1.09004 * 110.92413 * 264.10884 * 11 10 9 37 37 H 1.09007 * 110.74245 * 140.86105 * 11 10 9 38 38 H 1.08992 * 109.47290 * 47.19433 * 14 12 11 39 39 H 1.09001 * 109.47081 * 167.19896 * 14 12 11 40 40 H 1.08997 * 109.47160 * 95.16491 * 16 15 14 41 41 H 1.09000 * 109.46925 * 215.16415 * 16 15 14 42 42 H 1.08993 * 109.46952 * 335.16137 * 16 15 14 43 43 H 0.96989 * 120.00204 * 180.02562 * 20 19 17 44 44 H 1.09005 * 110.36313 * 274.66717 * 25 9 7 45 45 H 1.08998 * 110.36632 * 36.99042 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4483 -2.4359 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 6 4.1477 -1.1669 -1.4221 8 8 3.3592 -1.1671 -2.3436 9 7 5.4726 -1.1674 -1.6688 10 6 6.5338 -1.1617 -0.6512 11 6 7.8843 -1.1397 -1.3975 12 6 7.5038 -0.5548 -2.7832 13 1 7.4547 0.5336 -2.7484 14 6 8.4814 -1.0225 -3.8631 15 7 9.7629 -0.3333 -3.6933 16 6 10.8029 -0.9193 -2.8440 17 6 9.9888 0.8587 -4.3285 18 1 9.1555 1.4747 -4.6329 19 6 11.2886 1.2752 -4.5811 20 7 12.2863 0.4245 -4.4663 21 14 11.6219 3.0431 -5.0839 22 1 11.8580 3.8666 -3.8709 23 1 12.8224 3.0917 -5.9566 24 1 10.4501 3.5766 -5.8239 25 6 6.0980 -1.1666 -3.0039 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 1.2671 -2.7508 1.0272 30 1 0.4957 -2.3054 -0.5139 31 1 2.0372 -3.1955 -0.5147 32 1 4.0094 -2.0574 0.5125 33 1 4.0094 -0.2774 0.5128 34 1 6.4406 -0.2756 -0.0233 35 1 6.4653 -2.0611 -0.0392 36 1 8.2880 -2.1468 -1.5016 37 1 8.5966 -0.4911 -0.8874 38 1 8.6329 -2.0982 -3.7748 39 1 8.0729 -0.7927 -4.8472 40 1 11.4934 -1.4951 -3.4601 41 1 11.3470 -0.1239 -2.3348 42 1 10.3419 -1.5748 -2.1052 43 1 13.1946 0.7155 -4.6425 44 1 6.1831 -2.1848 -3.3835 45 1 5.5202 -0.5509 -3.6931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753357559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:08 Heat of formation + Delta-G solvation = -38.382371 kcal Electronic energy + Delta-G solvation = -24541.092074 eV Core-core repulsion = 20980.796949 eV Total energy + Delta-G solvation = -3560.295124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49778 -39.39799 -37.56522 -35.62603 -35.31388 -32.41331 -31.07238 -30.31926 -29.25235 -28.24917 -26.56222 -25.91272 -25.04734 -23.02014 -21.24001 -20.12467 -19.80033 -18.94562 -17.42045 -17.21764 -16.65391 -16.55086 -15.82793 -15.66758 -15.05273 -14.73815 -14.29202 -13.71139 -13.60132 -13.53104 -13.44226 -13.17016 -12.98760 -12.82222 -12.72749 -12.58421 -12.36097 -12.15633 -11.99730 -11.89627 -11.34875 -11.05372 -10.88865 -10.74166 -10.44370 -10.31923 -10.16081 -10.07919 -10.03263 -9.84427 -9.80266 -8.93844 -8.57577 -8.51486 -6.72443 -5.70987 -3.18023 2.31438 2.61838 2.62945 3.18615 3.40055 3.46789 3.48084 4.32713 4.43367 4.52283 4.72529 4.79987 4.84077 4.94956 5.00301 5.03794 5.08873 5.16218 5.23176 5.32167 5.38477 5.48507 5.51494 5.56374 5.72078 5.88505 5.97554 6.00271 6.07751 6.23302 6.24262 6.40093 6.52932 6.73236 6.75603 6.91007 7.04084 7.35985 7.56598 7.73260 7.82962 7.90907 8.17175 8.41702 9.25541 9.88894 10.37476 11.33486 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027243 B = 0.002922 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.558396 B = 9581.500533 C =10084.089179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.541 6.541 4 N -0.604 5.604 5 C 0.083 3.917 6 C 0.100 3.900 7 C 0.510 3.490 8 O -0.539 6.539 9 N -0.615 5.615 10 C 0.097 3.903 11 C -0.117 4.117 12 C -0.119 4.119 13 H 0.084 0.916 14 C 0.163 3.837 15 N -0.599 5.599 16 C 0.161 3.839 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.111 3.889 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.029 0.971 41 H 0.038 0.962 42 H 0.001 0.999 43 H 0.252 0.748 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.637 -8.919 12.936 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.305 3.695 3 O -0.417 6.417 4 N -0.337 5.337 5 C -0.060 4.060 6 C -0.026 4.026 7 C 0.297 3.703 8 O -0.416 6.416 9 N -0.349 5.349 10 C -0.026 4.026 11 C -0.155 4.155 12 C -0.141 4.141 13 H 0.102 0.898 14 C 0.035 3.965 15 N -0.322 5.322 16 C 0.017 3.983 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C -0.012 4.012 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.636 -8.344 12.434 24.694 hybrid contribution 0.409 0.852 -0.246 0.977 sum -19.227 -7.492 12.189 23.966 Atomic orbital electron populations 1.21917 0.91395 1.05496 1.04115 1.20853 0.90811 0.82866 0.74999 1.90739 1.70759 1.31076 1.49176 1.47465 1.05257 1.07046 1.73947 1.21815 0.97564 0.85087 1.01562 1.21275 0.81344 1.05484 0.94547 1.20751 0.80986 0.76595 0.91937 1.90681 1.54460 1.50188 1.46305 1.48609 1.04699 1.72544 1.09081 1.22179 0.88104 1.01036 0.91307 1.22626 0.94474 1.02012 0.96378 1.23229 0.92984 1.01102 0.96750 0.89801 1.20605 0.86496 0.94420 0.94987 1.43848 1.11398 1.23310 1.53595 1.20819 0.90210 0.95915 0.91388 1.19193 0.91795 0.94937 1.32537 0.91455 1.25010 0.96378 0.98060 1.00171 1.70068 0.98964 1.32640 1.53562 0.86274 0.77497 0.84888 0.78023 1.21535 1.21799 1.20463 1.22345 0.93915 1.00904 0.84032 0.89412 0.88994 0.89150 0.92264 0.90588 0.90947 0.87594 0.86930 0.91501 0.91738 0.90852 0.89783 0.94315 0.93175 0.95238 0.94356 0.98053 0.93800 0.91610 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 8.87 36.01 0.32 -0.90 16 2 C 0.52 6.22 7.78 -10.98 -0.09 6.14 16 3 O -0.54 -9.08 16.66 5.56 0.09 -8.99 16 4 N -0.60 -6.22 2.36 -182.95 -0.43 -6.65 16 5 C 0.08 0.51 10.24 59.84 0.61 1.13 16 6 C 0.10 1.08 5.08 -5.19 -0.03 1.05 16 7 C 0.51 7.48 7.92 -10.99 -0.09 7.39 16 8 O -0.54 -9.85 16.69 5.56 0.09 -9.76 16 9 N -0.61 -8.66 3.33 -170.53 -0.57 -9.22 16 10 C 0.10 1.12 6.48 -3.07 -0.02 1.10 16 11 C -0.12 -1.63 5.10 -24.90 -0.13 -1.76 16 12 C -0.12 -1.98 3.25 -88.49 -0.29 -2.27 16 13 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 14 C 0.16 3.20 5.15 -4.05 -0.02 3.18 16 15 N -0.60 -14.59 2.89 -181.13 -0.52 -15.11 16 16 C 0.16 3.81 8.75 59.85 0.52 4.34 16 17 C -0.25 -6.95 9.65 -15.05 -0.15 -7.10 16 18 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 19 C 0.00 0.06 5.08 -17.43 -0.09 -0.03 16 20 N -0.91 -26.41 10.77 55.49 0.60 -25.82 16 21 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 1.70 6.38 -2.54 -0.02 1.68 16 26 H 0.09 0.39 8.11 -51.93 -0.42 -0.03 16 27 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.09 0.55 7.40 -51.93 -0.38 0.16 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.38 6.44 -51.93 -0.33 0.05 16 31 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.11 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.11 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.98 7.54 -51.93 -0.39 0.59 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.71 7.90 -51.93 -0.41 0.30 16 39 H 0.05 1.01 8.04 -51.93 -0.42 0.60 16 40 H 0.03 0.77 7.33 -51.93 -0.38 0.39 16 41 H 0.04 0.98 7.38 -51.93 -0.38 0.59 16 42 H 0.00 0.02 6.54 -51.93 -0.34 -0.32 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.07 0.95 8.04 -51.93 -0.42 0.54 16 45 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -35.81 364.65 -7.32 -43.13 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -7.60 Total: -4.03 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 0.55 Total: 13.94 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.93 Total: -56.80 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.19 Total: -18.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.81 -7.32 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753357559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.748 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds