Wall clock time and date at job start Tue Mar 31 2020 03:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 120.00136 * 2 1 4 4 N 1.34780 * 119.99623 * 180.02562 * 2 1 3 5 5 C 1.46491 * 120.00164 * 359.97438 * 4 2 1 6 6 C 1.46503 * 119.99731 * 179.97438 * 4 2 1 7 7 C 1.50701 * 109.47210 * 270.00265 * 6 4 2 8 8 O 1.21277 * 119.99844 * 359.97438 * 7 6 4 9 9 N 1.34772 * 119.99754 * 180.02562 * 7 6 4 10 10 C 1.47022 * 125.65072 * 359.68545 * 9 7 6 11 11 C 1.54315 * 107.27603 * 180.97300 * 10 9 7 12 12 C 1.55153 * 102.86715 * 22.52548 * 11 10 9 13 13 H 1.08999 * 111.03538 * 82.39105 * 12 11 10 14 14 C 1.52995 * 111.00602 * 206.23096 * 12 11 10 15 15 N 1.46497 * 109.47184 * 287.19525 * 14 12 11 16 16 C 1.46500 * 119.99995 * 90.00012 * 15 14 12 17 17 C 1.36944 * 120.00016 * 270.00460 * 15 14 12 18 18 H 1.07997 * 119.99713 * 23.21997 * 17 15 14 19 19 C 1.38816 * 119.99984 * 203.22781 * 17 15 14 20 20 N 1.31622 * 119.99980 * 13.88066 * 19 17 15 21 21 Si 1.86792 * 120.00068 * 193.88303 * 19 17 15 22 22 H 1.48504 * 109.47070 * 89.99803 * 21 19 17 23 23 H 1.48494 * 109.47387 * 209.99750 * 21 19 17 24 24 H 1.48503 * 109.47448 * 330.00114 * 21 19 17 25 25 C 1.47429 * 125.64794 * 180.02562 * 9 7 6 26 26 H 1.09002 * 109.46846 * 239.99646 * 1 2 3 27 27 H 1.08999 * 109.46808 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47285 * 119.99373 * 1 2 3 29 29 H 1.09004 * 109.47059 * 269.99757 * 5 4 2 30 30 H 1.08999 * 109.47386 * 29.99480 * 5 4 2 31 31 H 1.09002 * 109.47534 * 150.00416 * 5 4 2 32 32 H 1.09004 * 109.46915 * 149.99681 * 6 4 2 33 33 H 1.09005 * 109.46723 * 29.99933 * 6 4 2 34 34 H 1.09001 * 109.88588 * 300.51353 * 10 9 7 35 35 H 1.08998 * 109.88689 * 61.68242 * 10 9 7 36 36 H 1.09004 * 110.92413 * 264.10884 * 11 10 9 37 37 H 1.09007 * 110.74245 * 140.86105 * 11 10 9 38 38 H 1.08992 * 109.47290 * 47.19433 * 14 12 11 39 39 H 1.09001 * 109.47081 * 167.19896 * 14 12 11 40 40 H 1.08997 * 109.47160 * 95.16491 * 16 15 14 41 41 H 1.09000 * 109.46925 * 215.16415 * 16 15 14 42 42 H 1.08993 * 109.46952 * 335.16137 * 16 15 14 43 43 H 0.96989 * 120.00204 * 180.02562 * 20 19 17 44 44 H 1.09005 * 110.36313 * 274.66717 * 25 9 7 45 45 H 1.08998 * 110.36632 * 36.99042 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4483 -2.4359 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 6 4.1477 -1.1669 -1.4221 8 8 3.3592 -1.1671 -2.3436 9 7 5.4726 -1.1674 -1.6688 10 6 6.5338 -1.1617 -0.6512 11 6 7.8843 -1.1397 -1.3975 12 6 7.5038 -0.5548 -2.7832 13 1 7.4547 0.5336 -2.7484 14 6 8.4814 -1.0225 -3.8631 15 7 9.7629 -0.3333 -3.6933 16 6 10.8029 -0.9193 -2.8440 17 6 9.9888 0.8587 -4.3285 18 1 9.1555 1.4747 -4.6329 19 6 11.2886 1.2752 -4.5811 20 7 12.2863 0.4245 -4.4663 21 14 11.6219 3.0431 -5.0839 22 1 11.8580 3.8666 -3.8709 23 1 12.8224 3.0917 -5.9566 24 1 10.4501 3.5766 -5.8239 25 6 6.0980 -1.1666 -3.0039 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5137 -0.8900 29 1 1.2671 -2.7508 1.0272 30 1 0.4957 -2.3054 -0.5139 31 1 2.0372 -3.1955 -0.5147 32 1 4.0094 -2.0574 0.5125 33 1 4.0094 -0.2774 0.5128 34 1 6.4406 -0.2756 -0.0233 35 1 6.4653 -2.0611 -0.0392 36 1 8.2880 -2.1468 -1.5016 37 1 8.5966 -0.4911 -0.8874 38 1 8.6329 -2.0982 -3.7748 39 1 8.0729 -0.7927 -4.8472 40 1 11.4934 -1.4951 -3.4601 41 1 11.3470 -0.1239 -2.3348 42 1 10.3419 -1.5748 -2.1052 43 1 13.1946 0.7155 -4.6425 44 1 6.1831 -2.1848 -3.3835 45 1 5.5202 -0.5509 -3.6931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753357559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:08 Heat of formation + Delta-G solvation = -62.631969 kcal Electronic energy + Delta-G solvation = -24542.143615 eV Core-core repulsion = 20980.796949 eV Total energy + Delta-G solvation = -3561.346666 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49647 -40.44133 -38.86375 -37.10851 -36.45831 -34.02583 -32.40937 -31.45831 -30.43426 -29.06631 -27.92576 -27.43768 -26.41387 -24.22422 -22.93515 -21.30866 -20.99744 -19.90464 -18.68839 -18.36959 -18.02975 -17.65196 -17.00130 -16.68645 -16.59539 -15.97758 -15.53516 -15.46380 -15.01850 -14.64446 -14.39413 -14.29043 -14.02434 -13.81998 -13.67795 -13.54108 -13.48880 -13.25759 -13.03364 -12.92807 -12.80024 -12.74324 -12.59896 -12.52896 -12.20005 -11.97550 -11.76953 -11.61385 -11.38784 -11.24599 -11.01760 -10.62917 -9.77654 -9.69527 -8.74418 -7.82362 -5.31042 1.41145 1.44681 1.45831 1.53795 1.54211 1.85003 2.22384 2.50205 3.29244 3.38807 3.65686 3.67078 3.72542 3.92846 4.11682 4.15960 4.25272 4.30887 4.34011 4.44806 4.47274 4.58529 4.59893 4.62596 4.77969 4.82181 4.85050 4.89823 4.94597 5.01235 5.07438 5.10475 5.20735 5.28996 5.33738 5.38662 5.49626 5.64502 5.76452 6.29831 6.34188 6.47989 7.01532 7.11742 7.17305 7.90319 8.31725 9.19500 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027243 B = 0.002922 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.558396 B = 9581.500533 C =10084.089179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.603 6.603 4 N -0.604 5.604 5 C 0.075 3.925 6 C 0.103 3.897 7 C 0.504 3.496 8 O -0.584 6.584 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.112 4.112 12 C -0.110 4.110 13 H 0.053 0.947 14 C 0.163 3.837 15 N -0.615 5.615 16 C 0.176 3.824 17 C -0.261 4.261 18 H 0.063 0.937 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.962 3.038 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.118 3.882 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.001 0.999 41 H 0.010 0.990 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 -10.605 14.929 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.484 6.484 4 N -0.336 5.336 5 C -0.066 4.066 6 C -0.024 4.024 7 C 0.293 3.707 8 O -0.464 6.464 9 N -0.350 5.350 10 C -0.021 4.021 11 C -0.150 4.150 12 C -0.132 4.132 13 H 0.072 0.928 14 C 0.036 3.964 15 N -0.338 5.338 16 C 0.031 3.969 17 C -0.391 4.391 18 H 0.080 0.920 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.198 1.198 25 C -0.006 4.006 26 H 0.141 0.859 27 H 0.104 0.896 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.379 -10.082 14.454 27.707 hybrid contribution 0.882 1.306 -0.888 1.809 sum -20.498 -8.776 13.566 26.100 Atomic orbital electron populations 1.21944 0.87864 1.05927 1.06369 1.21775 0.92730 0.82473 0.73831 1.90703 1.72228 1.33259 1.52224 1.47711 1.05317 1.08075 1.72507 1.22115 0.97583 0.83052 1.03825 1.21386 0.81993 1.07171 0.91828 1.21544 0.80581 0.75408 0.93215 1.90655 1.55516 1.52277 1.47992 1.48696 1.05293 1.72113 1.08937 1.22305 0.85601 1.03553 0.90604 1.22589 0.95868 1.02165 0.94376 1.22868 0.93227 0.99372 0.97741 0.92816 1.20727 0.85011 0.95196 0.95418 1.44063 1.12961 1.23063 1.53665 1.20586 0.89791 0.95106 0.91379 1.19439 0.91704 0.96123 1.31833 0.91968 1.25698 0.96359 1.01449 1.01086 1.70214 0.98949 1.34038 1.55058 0.85337 0.77157 0.80832 0.77556 1.21323 1.22004 1.19842 1.22129 0.92648 1.00952 0.84836 0.85934 0.89626 0.87747 0.89038 0.89392 0.91045 0.83162 0.87621 0.90730 0.87534 0.89434 0.90633 0.92220 0.94540 0.98088 0.97091 0.93733 0.94275 0.90216 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.87 71.24 0.63 -1.37 16 2 C 0.50 11.58 7.78 87.66 0.68 12.26 16 3 O -0.60 -20.60 16.66 -3.04 -0.05 -20.65 16 4 N -0.60 -11.10 2.36 -851.12 -2.01 -13.11 16 5 C 0.08 0.67 10.24 127.77 1.31 1.98 16 6 C 0.10 1.96 5.08 85.63 0.43 2.40 16 7 C 0.50 14.08 7.92 87.66 0.69 14.78 16 8 O -0.58 -21.24 16.69 -3.02 -0.05 -21.29 16 9 N -0.62 -16.29 3.33 -811.84 -2.70 -18.99 16 10 C 0.10 2.01 6.48 86.73 0.56 2.57 16 11 C -0.11 -2.86 5.10 31.78 0.16 -2.69 16 12 C -0.11 -3.62 3.25 -9.41 -0.03 -3.65 16 13 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 14 C 0.16 6.34 5.15 86.38 0.44 6.78 16 15 N -0.61 -30.08 2.89 -726.97 -2.10 -32.18 16 16 C 0.18 8.31 8.75 127.77 1.12 9.43 16 17 C -0.26 -14.43 9.65 84.03 0.81 -13.62 16 18 H 0.06 3.44 7.87 -2.91 -0.02 3.41 16 19 C -0.05 -2.87 5.08 84.86 0.43 -2.44 16 20 N -0.94 -55.55 10.77 21.65 0.23 -55.32 16 21 Si 0.96 46.03 29.58 68.60 2.03 48.06 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 25 C 0.12 3.55 6.38 86.85 0.55 4.10 16 26 H 0.12 0.63 8.11 -2.39 -0.02 0.61 16 27 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 28 H 0.10 1.00 7.40 -2.39 -0.02 0.99 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.58 6.44 -2.39 -0.02 0.56 16 31 H 0.07 0.68 8.07 -2.39 -0.02 0.66 16 32 H 0.15 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.11 2.22 7.42 -2.38 -0.02 2.21 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 2.01 7.54 -2.38 -0.02 1.99 16 37 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.06 2.07 7.90 -2.39 -0.02 2.05 16 39 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 40 H 0.00 0.04 7.33 -2.39 -0.02 0.03 16 41 H 0.01 0.54 7.38 -2.39 -0.02 0.52 16 42 H 0.04 1.67 6.54 -2.39 -0.02 1.66 16 43 H 0.25 14.32 8.31 -92.72 -0.77 13.55 16 44 H 0.08 2.19 8.04 -2.38 -0.02 2.17 16 45 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 Total: -1.00 -81.86 364.65 4.11 -77.75 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.96 Total: 5.20 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 7.80 Total: 30.52 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -6.58 Total: -119.60 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.10 Total: -41.94 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.86 4.11 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753357559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.123 kcal (2) G-P(sol) polarization free energy of solvation -81.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds