Wall clock time and date at job start Tue Mar 31 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47517 * 119.99461 * 2 1 3 5 5 N 1.46903 * 109.47234 * 295.00532 * 4 2 1 6 6 C 1.46895 * 110.99989 * 179.97438 * 5 4 2 7 7 C 1.50709 * 109.47104 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99925 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00163 * 0.02562 * 10 9 7 12 12 C 1.38944 * 120.00235 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99904 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00415 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47100 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47329 * 120.00081 * 14 12 10 17 17 H 1.48499 * 109.47571 * 240.00497 * 14 12 10 18 18 C 1.52997 * 109.47260 * 239.99743 * 2 1 3 19 19 N 1.46496 * 109.47194 * 64.99617 * 18 2 1 20 20 C 1.34777 * 120.00271 * 179.97438 * 19 18 2 21 21 O 1.21278 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00161 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46912 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49371 * 243.62054 * 23 22 20 25 25 C 1.53001 * 117.49608 * 175.00128 * 23 22 20 26 26 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47094 * 300.00305 * 1 2 3 28 28 H 1.09001 * 109.47254 * 60.00390 * 1 2 3 29 29 H 1.09001 * 109.46604 * 54.99696 * 4 2 1 30 30 H 1.08993 * 109.47585 * 175.00310 * 4 2 1 31 31 H 1.00900 * 111.00136 * 56.03674 * 5 4 2 32 32 H 1.09005 * 109.46827 * 299.99353 * 6 5 4 33 33 H 1.08995 * 109.47696 * 59.99587 * 6 5 4 34 34 H 0.96996 * 120.00102 * 359.97438 * 9 7 6 35 35 H 0.96997 * 120.00170 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47045 * 304.99744 * 18 2 1 37 37 H 1.09001 * 109.47375 * 184.99669 * 18 2 1 38 38 H 0.97005 * 120.00266 * 0.02562 * 19 18 2 39 39 H 1.09002 * 109.47152 * 60.00245 * 22 20 19 40 40 H 1.09001 * 109.46980 * 300.00345 * 22 20 19 41 41 H 1.08995 * 115.55630 * 29.32739 * 23 22 20 42 42 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 44 44 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 45 45 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1249 -0.6268 3.6672 7 6 1.7077 0.1784 4.8709 8 8 1.0784 1.2050 4.7254 9 7 2.0349 -0.2418 6.1090 10 6 1.6559 0.4910 7.2040 11 1 1.0948 1.4046 7.0745 12 6 1.9927 0.0576 8.4805 13 7 2.6750 -1.0544 8.6381 14 14 1.4769 1.0563 9.9724 15 1 0.7247 2.2572 9.5282 16 1 0.6113 0.2266 10.8485 17 1 2.6842 1.4791 10.7266 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0352 -2.4423 20 6 1.9964 -0.4133 -3.6659 21 8 2.6265 -1.4433 -3.7791 22 6 1.5982 0.3652 -4.8932 23 6 2.1081 -0.3562 -6.1424 24 6 3.1426 0.3701 -7.0046 25 6 1.7042 0.2158 -7.5028 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7196 1.2953 30 1 3.1264 -0.7993 1.2057 31 1 0.6529 0.1795 2.4753 32 1 1.6904 -1.6246 3.7297 33 1 3.2117 -0.7048 3.6406 34 1 2.5385 -1.0626 6.2254 35 1 2.9104 -1.3568 9.5292 36 1 1.6054 -1.7199 -1.2950 37 1 3.1264 -0.7995 -1.2056 38 1 1.1488 0.8593 -2.3518 39 1 2.0328 1.3638 -4.8470 40 1 0.5119 0.4435 -4.9372 41 1 2.1945 -1.4393 -6.0575 42 1 3.4603 1.3615 -6.6818 43 1 3.9099 -0.2354 -7.4871 44 1 1.5253 -0.4911 -8.3129 45 1 1.0749 1.1058 -7.5079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753604787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:07 Heat of formation + Delta-G solvation = -65.730690 kcal Electronic energy + Delta-G solvation = -22779.225692 eV Core-core repulsion = 19217.744656 eV Total energy + Delta-G solvation = -3561.481036 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13100 -38.43603 -37.71034 -37.00332 -34.88410 -33.87051 -32.41150 -31.20117 -29.96896 -27.41917 -26.68101 -24.79422 -23.19521 -22.75995 -21.47356 -20.69952 -20.08509 -19.22292 -17.91443 -17.50134 -16.69458 -16.06444 -15.93929 -15.61470 -15.47997 -14.75877 -14.46893 -14.42586 -14.34833 -13.85059 -13.72374 -13.38386 -13.15169 -12.99607 -12.68639 -12.50113 -12.04266 -11.90382 -11.84827 -11.59434 -11.54877 -11.20821 -11.09443 -10.97842 -10.91000 -10.75711 -10.43073 -10.34748 -10.22987 -10.04428 -9.52519 -9.31313 -8.47080 -8.07235 -7.96326 -6.42148 -3.83058 2.39935 2.85964 3.16043 3.26632 3.33846 3.43286 3.90448 4.08686 4.27126 4.31019 4.34783 4.52510 4.69697 4.70558 4.77344 4.87102 5.02185 5.12078 5.13649 5.23420 5.25147 5.26039 5.35366 5.43015 5.50399 5.55348 5.59989 5.71395 5.72195 5.79012 5.84551 5.91276 5.98292 6.05243 6.12558 6.22657 6.26970 7.19641 7.22363 7.54999 7.65083 7.97273 8.06143 8.60801 9.17487 9.54011 10.05274 10.75651 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.058796 B = 0.001774 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.105571 B =15778.855109 C =15984.518064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.125 3.875 19 N -0.729 5.729 20 C 0.513 3.487 21 O -0.540 6.540 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.179 4.179 25 C -0.181 4.181 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.349 0.651 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 0.306 -26.681 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.000 4.000 19 N -0.381 5.381 20 C 0.300 3.700 21 O -0.417 6.417 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.216 4.216 25 C -0.218 4.218 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.511 0.582 -26.691 26.740 hybrid contribution -0.680 -0.459 1.064 1.343 sum -2.191 0.123 -25.627 25.721 Atomic orbital electron populations 1.21901 0.94752 1.02038 1.02271 1.21363 0.96432 1.01166 0.93102 0.89297 1.21883 1.00793 0.94415 0.89345 1.60098 1.21018 1.49038 1.00027 1.21675 1.01208 0.95381 0.90007 1.19815 0.85600 0.87925 0.84041 1.90516 1.44415 1.26186 1.85721 1.41871 1.49507 1.24224 1.04437 1.19759 1.32816 1.06732 0.83606 0.87854 1.25266 0.96920 0.96654 0.99125 1.69621 1.38911 1.21775 1.23973 0.85795 0.78281 0.79558 0.80671 1.19223 1.20782 1.20736 1.21376 1.00247 0.95223 0.83106 1.46041 1.58157 1.28008 1.05921 1.20588 0.79155 0.85726 0.84579 1.90701 1.39663 1.24631 1.86656 1.21229 1.02805 0.99507 0.91555 1.22056 1.03704 1.00412 0.89813 1.23041 0.92587 1.01876 1.04048 1.23003 0.98273 1.03254 0.97255 0.92664 0.91415 0.92749 0.95186 0.90765 0.83079 0.93855 0.89542 0.77443 0.91919 0.91433 0.91261 0.76435 0.88731 0.88452 0.86401 0.88799 0.88733 0.88675 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.84 37.16 0.33 -1.02 16 2 C -0.10 -0.96 2.63 -90.62 -0.24 -1.20 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.07 0.77 5.14 -3.82 -0.02 0.75 16 5 N -0.67 -10.49 6.12 -115.06 -0.70 -11.19 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.41 7.82 -10.98 -0.09 10.32 16 8 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 1.16 5.06 -4.05 -0.02 1.13 16 19 N -0.73 -5.79 5.28 -60.30 -0.32 -6.10 16 20 C 0.51 4.90 7.83 -10.98 -0.09 4.82 16 21 O -0.54 -7.44 15.56 5.56 0.09 -7.35 16 22 C -0.11 -0.70 5.98 -27.88 -0.17 -0.86 16 23 C -0.14 -1.05 5.41 -90.62 -0.49 -1.54 16 24 C -0.18 -1.17 10.18 -26.73 -0.27 -1.44 16 25 C -0.18 -1.03 10.25 -26.73 -0.27 -1.31 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.69 6.68 -51.93 -0.35 0.35 16 28 H 0.05 0.39 7.18 -51.93 -0.37 0.01 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.35 5.60 6.68 -39.29 -0.26 5.34 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 2.21 7.66 -40.82 -0.31 1.90 16 39 H 0.09 0.45 7.88 -51.93 -0.41 0.04 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.12 1.11 7.31 -51.93 -0.38 0.73 16 42 H 0.09 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -33.36 374.93 -8.56 -41.92 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.41 Total: 12.55 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.60 Total: 2.47 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.36 Total: -55.51 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.36 -8.56 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753604787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.808 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds