Wall clock time and date at job start Tue Mar 31 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47090 * 2 1 4 4 C 1.53000 * 109.47517 * 119.99461 * 2 1 3 5 5 N 1.46903 * 109.47234 * 295.00532 * 4 2 1 6 6 C 1.46895 * 110.99989 * 179.97438 * 5 4 2 7 7 C 1.50709 * 109.47104 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99925 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99862 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00163 * 0.02562 * 10 9 7 12 12 C 1.38944 * 120.00235 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99904 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00415 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47100 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47329 * 120.00081 * 14 12 10 17 17 H 1.48499 * 109.47571 * 240.00497 * 14 12 10 18 18 C 1.52997 * 109.47260 * 239.99743 * 2 1 3 19 19 N 1.46496 * 109.47194 * 64.99617 * 18 2 1 20 20 C 1.34777 * 120.00271 * 179.97438 * 19 18 2 21 21 O 1.21278 * 119.99854 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00161 * 180.02562 * 20 19 18 23 23 C 1.53000 * 109.46912 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49371 * 243.62054 * 23 22 20 25 25 C 1.53001 * 117.49608 * 175.00128 * 23 22 20 26 26 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47094 * 300.00305 * 1 2 3 28 28 H 1.09001 * 109.47254 * 60.00390 * 1 2 3 29 29 H 1.09001 * 109.46604 * 54.99696 * 4 2 1 30 30 H 1.08993 * 109.47585 * 175.00310 * 4 2 1 31 31 H 1.00900 * 111.00136 * 56.03674 * 5 4 2 32 32 H 1.09005 * 109.46827 * 299.99353 * 6 5 4 33 33 H 1.08995 * 109.47696 * 59.99587 * 6 5 4 34 34 H 0.96996 * 120.00102 * 359.97438 * 9 7 6 35 35 H 0.96997 * 120.00170 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.47045 * 304.99744 * 18 2 1 37 37 H 1.09001 * 109.47375 * 184.99669 * 18 2 1 38 38 H 0.97005 * 120.00266 * 0.02562 * 19 18 2 39 39 H 1.09002 * 109.47152 * 60.00245 * 22 20 19 40 40 H 1.09001 * 109.46980 * 300.00345 * 22 20 19 41 41 H 1.08995 * 115.55630 * 29.32739 * 23 22 20 42 42 H 1.08998 * 117.50656 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.49674 * 145.02590 * 24 23 22 44 44 H 1.09003 * 117.49710 * 214.97494 * 25 23 22 45 45 H 1.08998 * 117.50185 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1249 -0.6268 3.6672 7 6 1.7077 0.1784 4.8709 8 8 1.0784 1.2050 4.7254 9 7 2.0349 -0.2418 6.1090 10 6 1.6559 0.4910 7.2040 11 1 1.0948 1.4046 7.0745 12 6 1.9927 0.0576 8.4805 13 7 2.6750 -1.0544 8.6381 14 14 1.4769 1.0563 9.9724 15 1 0.7247 2.2572 9.5282 16 1 0.6113 0.2266 10.8485 17 1 2.6842 1.4791 10.7266 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0352 -2.4423 20 6 1.9964 -0.4133 -3.6659 21 8 2.6265 -1.4433 -3.7791 22 6 1.5982 0.3652 -4.8932 23 6 2.1081 -0.3562 -6.1424 24 6 3.1426 0.3701 -7.0046 25 6 1.7042 0.2158 -7.5028 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -1.7196 1.2953 30 1 3.1264 -0.7993 1.2057 31 1 0.6529 0.1795 2.4753 32 1 1.6904 -1.6246 3.7297 33 1 3.2117 -0.7048 3.6406 34 1 2.5385 -1.0626 6.2254 35 1 2.9104 -1.3568 9.5292 36 1 1.6054 -1.7199 -1.2950 37 1 3.1264 -0.7995 -1.2056 38 1 1.1488 0.8593 -2.3518 39 1 2.0328 1.3638 -4.8470 40 1 0.5119 0.4435 -4.9372 41 1 2.1945 -1.4393 -6.0575 42 1 3.4603 1.3615 -6.6818 43 1 3.9099 -0.2354 -7.4871 44 1 1.5253 -0.4911 -8.3129 45 1 1.0749 1.1058 -7.5079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753604787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:06 Heat of formation + Delta-G solvation = -90.473984 kcal Electronic energy + Delta-G solvation = -22780.298642 eV Core-core repulsion = 19217.744656 eV Total energy + Delta-G solvation = -3562.553986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87863 -40.17828 -38.54342 -37.79884 -36.16545 -35.63305 -33.48373 -33.15161 -30.58087 -28.75961 -27.56076 -26.42998 -24.46088 -23.21403 -22.14231 -21.48793 -21.12924 -20.68647 -19.90818 -18.23540 -17.92078 -17.25472 -16.95038 -16.63197 -16.46836 -16.28243 -15.88112 -15.52023 -15.31621 -14.98112 -14.90280 -14.40627 -14.31716 -13.93143 -13.71854 -13.47486 -13.45597 -13.15554 -13.06690 -12.79927 -12.40932 -12.39059 -12.31156 -12.11755 -12.05781 -11.84704 -11.75076 -11.51523 -11.29807 -10.98380 -10.74896 -10.34919 -10.06718 -10.01935 -9.33341 -8.47034 -5.96007 1.36889 1.42293 1.56572 1.68139 2.04538 2.17369 2.30111 2.91991 2.97961 3.20316 3.53353 3.76285 3.78745 3.90760 3.95673 4.00121 4.07084 4.19953 4.32571 4.46806 4.52238 4.55124 4.57739 4.59559 4.66678 4.76300 4.79380 4.81902 4.82854 4.95941 5.01634 5.06562 5.26120 5.28286 5.34637 5.38001 5.41031 5.50883 5.88236 6.09554 6.41553 6.59002 6.59553 7.12154 7.29421 7.55714 8.10645 8.70573 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.058796 B = 0.001774 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.105571 B =15778.855109 C =15984.518064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.065 3.935 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.438 3.562 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.132 3.868 19 N -0.718 5.718 20 C 0.509 3.491 21 O -0.589 6.589 22 C -0.102 4.102 23 C -0.160 4.160 24 C -0.186 4.186 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.345 0.655 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.396 0.604 35 H 0.278 0.722 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 0.962 -27.472 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.064 4.064 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.370 5.370 20 C 0.297 3.703 21 O -0.470 6.470 22 C -0.141 4.141 23 C -0.179 4.179 24 C -0.223 4.223 25 C -0.202 4.202 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.017 1.240 -27.492 27.593 hybrid contribution -0.512 -0.683 1.249 1.513 sum -2.529 0.557 -26.242 26.370 Atomic orbital electron populations 1.21879 0.94057 1.02203 1.02573 1.21203 0.96840 1.00614 0.92058 0.89522 1.21974 1.01185 0.94731 0.88524 1.60100 1.20857 1.50016 1.00437 1.21543 1.02229 0.95116 0.88043 1.20874 0.83948 0.87650 0.85022 1.90483 1.45844 1.28108 1.86478 1.41944 1.50028 1.24332 1.04756 1.19726 1.34403 1.07007 0.85296 0.90229 1.26053 0.96416 0.97573 1.01242 1.69681 1.38958 1.22511 1.25005 0.84852 0.78219 0.77972 0.77170 1.19727 1.19592 1.19653 1.21194 0.99542 0.95077 0.83502 1.45948 1.57672 1.28236 1.05182 1.21222 0.78186 0.85245 0.85669 1.90684 1.42001 1.26924 1.87347 1.21257 1.04328 0.99526 0.89033 1.22010 1.05292 0.99200 0.91390 1.23129 0.93016 1.02127 1.04018 1.23082 0.97654 1.03548 0.95909 0.92581 0.92870 0.90674 0.94189 0.90377 0.83469 0.91654 0.87865 0.76984 0.91304 0.92125 0.92304 0.74724 0.86527 0.86029 0.89213 0.87751 0.89372 0.88468 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.84 71.98 0.64 -1.76 16 2 C -0.09 -1.53 2.63 -10.79 -0.03 -1.56 16 3 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.07 1.43 5.14 86.30 0.44 1.87 16 5 N -0.68 -20.66 6.12 -517.93 -3.17 -23.83 16 6 C 0.06 2.15 6.17 85.56 0.53 2.68 16 7 C 0.44 20.80 7.82 87.66 0.69 21.49 16 8 O -0.62 -34.35 15.78 -3.06 -0.05 -34.40 16 9 N -0.57 -29.51 5.29 -306.98 -1.62 -31.13 16 10 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 13 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 14 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 C 0.13 2.29 5.06 86.38 0.44 2.73 16 19 N -0.72 -10.17 5.28 -463.07 -2.45 -12.62 16 20 C 0.51 9.20 7.83 87.66 0.69 9.88 16 21 O -0.59 -16.47 15.56 -3.02 -0.05 -16.52 16 22 C -0.10 -1.07 5.98 29.85 0.18 -0.89 16 23 C -0.16 -2.26 5.41 -10.79 -0.06 -2.32 16 24 C -0.19 -2.23 10.18 30.60 0.31 -1.92 16 25 C -0.17 -1.58 10.25 30.60 0.31 -1.26 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 1.03 6.68 -2.38 -0.02 1.02 16 28 H 0.07 0.88 7.18 -2.39 -0.02 0.86 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.35 10.90 6.68 -89.69 -0.60 10.30 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 35 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.42 3.48 7.66 -92.70 -0.71 2.77 16 39 H 0.12 0.73 7.88 -2.39 -0.02 0.71 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 1.78 7.31 -2.39 -0.02 1.76 16 42 H 0.10 1.01 8.03 -2.39 -0.02 0.99 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -73.38 374.93 -0.65 -74.03 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -1.03 Total: 38.59 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.41 Total: 10.44 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -6.96 Total: -117.04 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.10 Total: -50.92 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.38 -0.65 -74.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753604787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.448 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds