Wall clock time and date at job start Tue Mar 31 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47249 * 2 1 4 4 C 1.46770 * 124.34461 * 269.72572 * 3 2 1 5 5 C 1.54656 * 105.37829 * 162.85583 * 4 3 2 6 6 H 1.09003 * 111.22277 * 267.57622 * 5 4 3 7 7 C 1.50701 * 110.82296 * 143.77636 * 5 4 3 8 8 O 1.21278 * 119.99989 * 6.34444 * 7 5 4 9 9 N 1.34780 * 120.00248 * 186.34788 * 7 5 4 10 10 C 1.46498 * 120.00114 * 179.97438 * 9 7 5 11 11 C 1.52995 * 109.47045 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47343 * 55.00310 * 11 10 9 13 13 C 1.52997 * 109.47094 * 294.99868 * 11 10 9 14 14 C 1.53006 * 109.46909 * 175.00096 * 11 10 9 15 15 N 1.46507 * 109.47096 * 185.00062 * 14 11 10 16 16 C 1.36936 * 119.99924 * 179.97438 * 15 14 11 17 17 H 1.08000 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99772 * 179.97438 * 16 15 14 19 19 N 1.31610 * 119.99835 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47214 * 90.00322 * 20 18 16 22 22 H 1.48503 * 109.46876 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47369 * 329.99773 * 20 18 16 24 24 C 1.54629 * 101.68909 * 25.76247 * 5 4 3 25 25 C 1.34419 * 124.35230 * 90.01901 * 3 2 1 26 26 O 1.21275 * 124.94018 * 0.39382 * 25 3 2 27 27 H 1.09001 * 109.47002 * 60.00085 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00351 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99358 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99649 * 2 1 3 32 32 H 1.09002 * 110.24054 * 281.98137 * 4 3 2 33 33 H 1.08998 * 110.24914 * 43.98065 * 4 3 2 34 34 H 0.97001 * 119.99797 * 359.97438 * 9 7 5 35 35 H 1.08999 * 109.46804 * 299.99935 * 10 9 7 36 36 H 1.09004 * 109.47326 * 59.99790 * 10 9 7 37 37 H 1.09002 * 109.47716 * 299.99751 * 13 11 10 38 38 H 1.08996 * 109.47129 * 60.00125 * 13 11 10 39 39 H 1.09008 * 109.47150 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47264 * 304.99762 * 14 11 10 41 41 H 1.08995 * 109.46966 * 65.00019 * 14 11 10 42 42 H 0.97001 * 119.99486 * 359.97438 * 15 14 11 43 43 H 0.97002 * 119.99893 * 179.97438 * 19 18 16 44 44 H 1.09002 * 110.48956 * 216.30853 * 24 5 4 45 45 H 1.08995 * 110.48268 * 93.66547 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2999 2.1599 -1.2118 5 6 2.3527 3.6346 -0.7486 6 1 1.3782 4.1133 -0.8443 7 6 3.4032 4.3987 -1.5126 8 8 3.9856 3.8707 -2.4361 9 7 3.6955 5.6690 -1.1696 10 6 4.7171 6.4116 -1.9119 11 6 4.8527 7.8179 -1.3247 12 1 5.0571 7.7474 -0.2564 13 6 3.5506 8.5903 -1.5451 14 6 6.0038 8.5507 -2.0169 15 7 6.2113 9.8511 -1.3748 16 6 7.1955 10.6888 -1.8271 17 1 7.8191 10.3908 -2.6570 18 6 7.3916 11.9211 -1.2190 19 7 8.3379 12.7261 -1.6535 20 14 6.3134 12.4363 0.2168 21 1 6.9356 11.9885 1.4887 22 1 6.1757 13.9149 0.2268 23 1 4.9719 11.8152 0.0763 24 6 2.7508 3.4820 0.7377 25 6 2.2716 2.0962 1.1097 26 8 2.1355 1.6895 2.2441 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 3.2576 1.8611 -1.6382 33 1 1.5021 2.0233 -1.9418 34 1 3.2295 6.0914 -0.4311 35 1 5.6719 5.8916 -1.8349 36 1 4.4253 6.4824 -2.9598 37 1 3.3463 8.6609 -2.6135 38 1 2.7306 8.0683 -1.0521 39 1 3.6474 9.5925 -1.1272 40 1 6.9139 7.9562 -1.9359 41 1 5.7595 8.6996 -3.0686 42 1 5.6514 10.1185 -0.6292 43 1 8.4747 13.5874 -1.2288 44 1 2.2498 4.2350 1.3461 45 1 3.8322 3.5554 0.8524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:03 Heat of formation + Delta-G solvation = -66.938827 kcal Electronic energy + Delta-G solvation = -23799.901443 eV Core-core repulsion = 20238.368018 eV Total energy + Delta-G solvation = -3561.533425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21962 -39.61692 -37.21228 -36.59081 -34.65596 -34.32915 -32.55982 -30.72016 -30.07576 -28.16128 -26.83643 -25.82441 -24.09586 -23.14207 -21.93573 -20.69493 -20.02674 -19.76393 -18.01084 -17.48006 -17.29665 -16.28993 -16.25006 -15.62752 -15.41759 -14.72741 -14.53547 -14.46326 -14.17372 -14.11685 -13.83040 -13.57836 -13.52893 -13.19617 -12.79512 -12.61788 -12.52256 -12.38798 -12.26627 -12.01111 -11.84122 -11.53568 -11.49826 -11.09842 -10.81257 -10.69167 -10.68492 -10.38359 -10.16668 -9.96316 -9.61283 -9.26574 -9.15220 -8.93671 -7.27033 -5.79626 -3.15597 2.17082 2.29385 2.47247 2.91628 3.32823 3.35644 3.42129 3.75581 3.87454 4.29652 4.40085 4.55509 4.57529 4.69910 4.70860 4.81681 4.91335 5.01151 5.02752 5.09553 5.16362 5.22018 5.26780 5.40849 5.44334 5.50678 5.59466 5.67744 5.70115 5.78335 5.80822 6.00815 6.09167 6.15668 6.26415 6.39933 6.60092 6.66166 6.69070 7.21993 7.75097 7.91198 7.96394 8.39135 9.17845 9.89863 10.09256 11.38745 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032433 B = 0.002425 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.100259 B =11544.330339 C =11989.016480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.124 4.124 6 H 0.120 0.880 7 C 0.523 3.477 8 O -0.535 6.535 9 N -0.721 5.721 10 C 0.126 3.874 11 C -0.115 4.115 12 H 0.077 0.923 13 C -0.144 4.144 14 C 0.165 3.835 15 N -0.754 5.754 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.147 4.147 25 C 0.520 3.480 26 O -0.529 6.529 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.402 0.598 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.984 -23.570 2.189 29.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.355 5.355 4 C -0.005 4.005 5 C -0.146 4.146 6 H 0.138 0.862 7 C 0.308 3.692 8 O -0.411 6.411 9 N -0.372 5.372 10 C 0.002 3.998 11 C -0.134 4.134 12 H 0.095 0.905 13 C -0.201 4.201 14 C 0.037 3.963 15 N -0.400 5.400 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.188 4.188 25 C 0.308 3.692 26 O -0.406 6.406 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.450 -24.148 1.965 29.857 hybrid contribution -0.954 0.850 1.285 1.812 sum -18.404 -23.298 3.250 29.867 Atomic orbital electron populations 1.22163 0.95615 1.02501 1.02520 1.21368 0.94438 0.80855 1.03397 1.48382 1.65769 1.14129 1.07207 1.22008 1.03540 0.88006 0.86932 1.22290 1.00407 0.96693 0.95245 0.86231 1.20009 0.83238 0.81906 0.84044 1.90739 1.52207 1.68454 1.29736 1.46039 1.41422 1.13392 1.36324 1.21446 0.91095 0.91228 0.96000 1.21613 0.97442 0.93258 1.01120 0.90508 1.21824 0.95536 1.00676 1.02108 1.20553 0.93773 0.86707 0.95280 1.42681 1.41177 1.16681 1.39478 1.19057 1.08239 0.96363 1.13804 0.89173 1.24685 0.98476 0.96783 0.99289 1.69698 1.34085 1.10677 1.43654 0.86541 0.80513 0.77809 0.83556 1.21084 1.21719 1.20403 1.22382 1.04638 0.96765 0.94987 1.20743 0.76483 0.87560 0.84443 1.90742 1.53342 1.75432 1.21052 0.92314 0.91281 0.92209 0.89884 0.90078 0.88927 0.89659 0.76367 0.90949 0.90943 0.92354 0.93652 0.91736 0.95209 0.95152 0.80628 0.93031 0.86996 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.12 0.77 6.65 -4.04 -0.03 0.74 16 3 N -0.62 -4.84 2.93 -172.30 -0.51 -5.35 16 4 C 0.12 0.79 6.65 -3.02 -0.02 0.77 16 5 C -0.12 -0.78 3.56 -90.04 -0.32 -1.10 16 6 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 7 C 0.52 4.87 7.07 -10.98 -0.08 4.79 16 8 O -0.53 -7.02 15.57 5.56 0.09 -6.93 16 9 N -0.72 -6.27 5.23 -60.30 -0.32 -6.58 16 10 C 0.13 1.42 5.06 -4.05 -0.02 1.40 16 11 C -0.12 -1.49 2.46 -90.62 -0.22 -1.72 16 12 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 13 C -0.14 -1.77 8.94 37.16 0.33 -1.44 16 14 C 0.16 2.96 5.65 -4.03 -0.02 2.93 16 15 N -0.75 -17.19 5.13 -59.90 -0.31 -17.49 16 16 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 19 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 20 Si 0.89 21.65 27.74 -169.99 -4.71 16.93 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 24 C -0.15 -1.00 6.37 -26.74 -0.17 -1.17 16 25 C 0.52 5.11 8.02 -10.86 -0.09 5.02 16 26 O -0.53 -7.28 17.59 5.56 0.10 -7.18 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.75 7.07 -51.93 -0.37 0.38 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.40 2.59 7.65 -40.82 -0.31 2.28 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.42 7.18 -51.93 -0.37 0.05 16 39 H 0.06 0.94 7.18 -51.92 -0.37 0.57 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.36 7.93 4.71 -40.82 -0.19 7.74 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.11 0.79 7.89 -51.93 -0.41 0.38 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -35.38 367.37 -7.38 -42.76 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.53 Total: 3.94 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.51 Total: 2.69 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.35 Total: -57.75 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.18 Total: -14.11 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.38 -7.38 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.180 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds