Wall clock time and date at job start Tue Mar 31 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47377 * 2 1 4 4 C 1.46762 * 124.35038 * 89.99829 * 3 2 1 5 5 C 1.54478 * 105.47516 * 196.99476 * 4 3 2 6 6 H 1.09004 * 110.96618 * 92.73550 * 5 4 3 7 7 C 1.50696 * 110.97132 * 216.46340 * 5 4 3 8 8 O 1.21284 * 120.00096 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99838 * 180.02562 * 7 5 4 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47192 * 54.99783 * 11 10 9 13 13 C 1.53001 * 109.46729 * 294.99928 * 11 10 9 14 14 C 1.53001 * 109.47049 * 174.99938 * 11 10 9 15 15 N 1.46503 * 109.47149 * 184.99765 * 14 11 10 16 16 C 1.36929 * 120.00217 * 180.02562 * 15 14 11 17 17 H 1.08008 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00425 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99451 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00274 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47054 * 90.00093 * 20 18 16 22 22 H 1.48504 * 109.47263 * 210.00035 * 20 18 16 23 23 H 1.48498 * 109.47174 * 329.99931 * 20 18 16 24 24 C 1.54625 * 101.76494 * 334.58676 * 5 4 3 25 25 C 1.34421 * 124.35112 * 269.97520 * 3 2 1 26 26 O 1.21285 * 124.93840 * 359.61116 * 25 3 2 27 27 H 1.09001 * 109.46588 * 60.00245 * 1 2 3 28 28 H 1.08993 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46740 * 300.00187 * 1 2 3 30 30 H 1.09001 * 109.47410 * 239.99473 * 2 1 3 31 31 H 1.09008 * 109.46759 * 120.00132 * 2 1 3 32 32 H 1.09001 * 110.24496 * 77.99304 * 4 3 2 33 33 H 1.09003 * 110.31679 * 316.03253 * 4 3 2 34 34 H 0.97001 * 120.00676 * 359.97438 * 9 7 5 35 35 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 36 36 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 37 37 H 1.09000 * 109.47757 * 60.00487 * 13 11 10 38 38 H 1.09004 * 109.46683 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47620 * 299.99731 * 13 11 10 40 40 H 1.08995 * 109.47104 * 305.00244 * 14 11 10 41 41 H 1.09005 * 109.47062 * 64.99892 * 14 11 10 42 42 H 0.97002 * 119.99560 * 359.97438 * 15 14 11 43 43 H 0.97001 * 119.99806 * 180.02562 * 19 18 16 44 44 H 1.08994 * 110.48891 * 143.47520 * 24 5 4 45 45 H 1.09007 * 110.48561 * 266.11576 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3536 3.6345 0.7486 6 1 1.3791 4.1131 0.8450 7 6 3.4044 4.3982 1.5124 8 8 4.0653 3.8373 2.3607 9 7 3.6099 5.7047 1.2528 10 6 4.6318 6.4472 1.9950 11 6 4.6601 7.8983 1.5111 12 1 3.6625 8.3291 1.5959 13 6 5.1110 7.9398 0.0496 14 6 5.6379 8.7032 2.3696 15 7 5.5769 10.1156 1.9852 16 6 6.3701 11.0331 2.6210 17 1 7.0409 10.7154 3.4056 18 6 6.3119 12.3714 2.2572 19 7 5.4940 12.7585 1.3014 20 14 7.3934 13.6230 3.1250 21 1 8.6880 13.7409 2.4071 22 1 6.7120 14.9425 3.1367 23 1 7.6399 13.1809 4.5210 24 6 2.7513 3.4818 -0.7378 25 6 2.2717 2.0961 -1.1098 26 8 2.1356 1.6893 -2.2442 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.2499 1.8635 1.6431 33 1 1.4941 2.0272 1.9392 34 1 3.0817 6.1534 0.5741 35 1 4.3969 6.4238 3.0591 36 1 5.6067 5.9890 1.8281 37 1 4.4144 7.3665 -0.5620 38 1 5.1316 8.9738 -0.2949 39 1 6.1087 7.5091 -0.0353 40 1 5.3680 8.6006 3.4206 41 1 6.6498 8.3282 2.2161 42 1 4.9752 10.4007 1.2798 43 1 5.4536 13.6937 1.0469 44 1 2.2505 4.2349 -1.3461 45 1 3.8329 3.5548 -0.8528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:05 Heat of formation + Delta-G solvation = -71.417924 kcal Electronic energy + Delta-G solvation = -23721.285043 eV Core-core repulsion = 20159.557390 eV Total energy + Delta-G solvation = -3561.727653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17143 -39.55161 -37.08065 -36.51691 -34.51975 -34.26814 -32.52934 -30.41904 -29.84247 -28.12550 -26.68703 -25.55164 -24.07735 -23.16156 -22.22499 -20.61569 -19.83377 -19.70070 -17.89371 -17.34333 -16.99833 -16.20920 -16.15744 -15.57826 -15.33189 -14.68787 -14.50898 -14.42524 -14.14005 -13.99968 -13.67616 -13.55538 -13.47064 -13.01335 -12.74849 -12.65833 -12.38320 -12.35058 -12.12503 -11.91443 -11.77905 -11.49940 -11.10047 -10.94971 -10.74656 -10.63002 -10.50015 -10.34021 -10.08722 -9.91233 -9.69703 -9.18799 -9.10703 -8.90399 -6.95291 -5.79661 -3.08178 2.20848 2.34775 2.52487 2.98182 3.42245 3.47625 3.49081 3.82062 3.93980 4.35203 4.45301 4.56779 4.61708 4.74132 4.76515 4.94436 4.99075 5.06389 5.14924 5.15399 5.26750 5.30938 5.32590 5.44224 5.49588 5.55060 5.73372 5.74670 5.89923 5.91302 6.05157 6.13141 6.18189 6.32397 6.38119 6.61141 6.70147 6.72688 6.81840 7.30146 7.68018 7.79223 7.98013 8.39460 9.50792 10.07709 10.42340 11.43273 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.002208 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.046667 B =12680.719704 C =13031.297997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.125 4.125 6 H 0.118 0.882 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.719 5.719 10 C 0.125 3.875 11 C -0.111 4.111 12 H 0.077 0.923 13 C -0.142 4.142 14 C 0.160 3.840 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.145 4.145 25 C 0.520 3.480 26 O -0.530 6.530 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -23.716 -2.271 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.354 5.354 4 C -0.006 4.006 5 C -0.147 4.147 6 H 0.136 0.864 7 C 0.308 3.692 8 O -0.414 6.414 9 N -0.370 5.370 10 C 0.002 3.998 11 C -0.130 4.130 12 H 0.095 0.905 13 C -0.200 4.200 14 C 0.032 3.968 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.185 4.185 25 C 0.308 3.692 26 O -0.406 6.406 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.237 0.763 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.131 0.869 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.073 -24.330 -2.125 26.418 hybrid contribution 0.075 1.190 0.001 1.193 sum -9.998 -23.139 -2.124 25.296 Atomic orbital electron populations 1.22164 0.95628 1.02480 1.02540 1.21363 0.94429 0.80885 1.03366 1.48368 1.65816 1.14043 1.07208 1.21984 1.03600 0.88095 0.86962 1.22245 1.00407 0.96689 0.95343 0.86371 1.19992 0.83801 0.82248 0.83180 1.90729 1.48578 1.68530 1.33532 1.46042 1.39702 1.09941 1.41296 1.21472 0.91069 0.91301 0.95963 1.21558 1.01403 0.93221 0.96796 0.90475 1.21800 1.00473 1.02912 0.94769 1.20576 0.95311 0.85729 0.95179 1.42334 1.49612 1.01085 1.44510 1.19232 1.15666 0.88138 1.14006 0.91150 1.24743 0.99968 0.97158 0.99188 1.69655 1.40414 1.15895 1.32322 0.86173 0.79838 0.81088 0.78998 1.21720 1.21780 1.20751 1.22351 1.04606 0.96699 0.94885 1.20757 0.76462 0.87564 0.84432 1.90742 1.53401 1.75435 1.21050 0.92187 0.91306 0.92314 0.89897 0.90109 0.88820 0.89724 0.76279 0.91149 0.91169 0.93865 0.91106 0.92792 0.96127 0.96003 0.78201 0.93514 0.86950 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.12 0.80 6.65 -4.04 -0.03 0.78 16 3 N -0.62 -5.05 2.93 -172.41 -0.51 -5.56 16 4 C 0.12 0.83 6.71 -3.12 -0.02 0.81 16 5 C -0.12 -0.85 3.54 -90.14 -0.32 -1.17 16 6 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 7 C 0.52 5.18 7.06 -10.99 -0.08 5.10 16 8 O -0.54 -7.33 15.50 5.55 0.09 -7.25 16 9 N -0.72 -6.81 5.28 -60.29 -0.32 -7.13 16 10 C 0.13 1.52 5.06 -4.04 -0.02 1.50 16 11 C -0.11 -1.56 2.46 -90.62 -0.22 -1.79 16 12 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.14 -1.94 8.94 37.16 0.33 -1.61 16 14 C 0.16 3.04 5.65 -4.04 -0.02 3.02 16 15 N -0.73 -17.84 5.33 -59.91 -0.32 -18.16 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.14 -1.06 6.41 -26.75 -0.17 -1.23 16 25 C 0.52 5.30 8.02 -10.86 -0.09 5.21 16 26 O -0.53 -7.44 17.59 5.55 0.10 -7.34 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.63 7.92 -51.93 -0.41 0.21 16 31 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.09 0.80 6.96 -51.93 -0.36 0.44 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.40 2.94 7.65 -40.82 -0.31 2.63 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 38 H 0.07 1.17 7.18 -51.93 -0.37 0.79 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.38 9.74 6.85 -40.82 -0.28 9.47 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.11 0.84 7.89 -51.93 -0.41 0.43 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -34.31 370.43 -7.74 -42.06 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.56 Total: 4.89 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.50 Total: 2.77 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.42 Total: -57.89 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.18 Total: -14.59 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.31 -7.74 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.362 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds