Wall clock time and date at job start Tue Mar 31 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47377 * 2 1 4 4 C 1.46762 * 124.35038 * 89.99829 * 3 2 1 5 5 C 1.54478 * 105.47516 * 196.99476 * 4 3 2 6 6 H 1.09004 * 110.96618 * 92.73550 * 5 4 3 7 7 C 1.50696 * 110.97132 * 216.46340 * 5 4 3 8 8 O 1.21284 * 120.00096 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99838 * 180.02562 * 7 5 4 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47192 * 54.99783 * 11 10 9 13 13 C 1.53001 * 109.46729 * 294.99928 * 11 10 9 14 14 C 1.53001 * 109.47049 * 174.99938 * 11 10 9 15 15 N 1.46503 * 109.47149 * 184.99765 * 14 11 10 16 16 C 1.36929 * 120.00217 * 180.02562 * 15 14 11 17 17 H 1.08008 * 119.99898 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00425 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99451 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00274 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47054 * 90.00093 * 20 18 16 22 22 H 1.48504 * 109.47263 * 210.00035 * 20 18 16 23 23 H 1.48498 * 109.47174 * 329.99931 * 20 18 16 24 24 C 1.54625 * 101.76494 * 334.58676 * 5 4 3 25 25 C 1.34421 * 124.35112 * 269.97520 * 3 2 1 26 26 O 1.21285 * 124.93840 * 359.61116 * 25 3 2 27 27 H 1.09001 * 109.46588 * 60.00245 * 1 2 3 28 28 H 1.08993 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46740 * 300.00187 * 1 2 3 30 30 H 1.09001 * 109.47410 * 239.99473 * 2 1 3 31 31 H 1.09008 * 109.46759 * 120.00132 * 2 1 3 32 32 H 1.09001 * 110.24496 * 77.99304 * 4 3 2 33 33 H 1.09003 * 110.31679 * 316.03253 * 4 3 2 34 34 H 0.97001 * 120.00676 * 359.97438 * 9 7 5 35 35 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 36 36 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 37 37 H 1.09000 * 109.47757 * 60.00487 * 13 11 10 38 38 H 1.09004 * 109.46683 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47620 * 299.99731 * 13 11 10 40 40 H 1.08995 * 109.47104 * 305.00244 * 14 11 10 41 41 H 1.09005 * 109.47062 * 64.99892 * 14 11 10 42 42 H 0.97002 * 119.99560 * 359.97438 * 15 14 11 43 43 H 0.97001 * 119.99806 * 180.02562 * 19 18 16 44 44 H 1.08994 * 110.48891 * 143.47520 * 24 5 4 45 45 H 1.09007 * 110.48561 * 266.11576 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3536 3.6345 0.7486 6 1 1.3791 4.1131 0.8450 7 6 3.4044 4.3982 1.5124 8 8 4.0653 3.8373 2.3607 9 7 3.6099 5.7047 1.2528 10 6 4.6318 6.4472 1.9950 11 6 4.6601 7.8983 1.5111 12 1 3.6625 8.3291 1.5959 13 6 5.1110 7.9398 0.0496 14 6 5.6379 8.7032 2.3696 15 7 5.5769 10.1156 1.9852 16 6 6.3701 11.0331 2.6210 17 1 7.0409 10.7154 3.4056 18 6 6.3119 12.3714 2.2572 19 7 5.4940 12.7585 1.3014 20 14 7.3934 13.6230 3.1250 21 1 8.6880 13.7409 2.4071 22 1 6.7120 14.9425 3.1367 23 1 7.6399 13.1809 4.5210 24 6 2.7513 3.4818 -0.7378 25 6 2.2717 2.0961 -1.1098 26 8 2.1356 1.6893 -2.2442 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.2499 1.8635 1.6431 33 1 1.4941 2.0272 1.9392 34 1 3.0817 6.1534 0.5741 35 1 4.3969 6.4238 3.0591 36 1 5.6067 5.9890 1.8281 37 1 4.4144 7.3665 -0.5620 38 1 5.1316 8.9738 -0.2949 39 1 6.1087 7.5091 -0.0353 40 1 5.3680 8.6006 3.4206 41 1 6.6498 8.3282 2.2161 42 1 4.9752 10.4007 1.2798 43 1 5.4536 13.6937 1.0469 44 1 2.2505 4.2349 -1.3461 45 1 3.8329 3.5548 -0.8528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:04 Heat of formation + Delta-G solvation = -95.851057 kcal Electronic energy + Delta-G solvation = -23722.344543 eV Core-core repulsion = 20159.557390 eV Total energy + Delta-G solvation = -3562.787153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88720 -40.40396 -38.28252 -37.39429 -35.94733 -34.94854 -34.00636 -31.92914 -30.70707 -28.77588 -27.76520 -27.12611 -25.03830 -24.16444 -23.42669 -21.56417 -20.91356 -20.41944 -19.21679 -18.44321 -17.97176 -17.22767 -16.89225 -16.55564 -16.44612 -16.03434 -15.64829 -15.46051 -15.04500 -15.02939 -14.74030 -14.69208 -14.31220 -14.07234 -13.97347 -13.56396 -13.49282 -13.31277 -12.95220 -12.86093 -12.79166 -12.50759 -12.39393 -12.17663 -12.13832 -12.01395 -11.95497 -11.67963 -11.62325 -11.16715 -10.93077 -10.76543 -10.07406 -9.77955 -8.97636 -7.94623 -5.22381 1.45925 1.48591 1.49651 1.57063 1.58119 1.87490 2.21377 2.57566 3.18079 3.34204 3.39256 3.74370 3.77505 3.88333 4.00814 4.09872 4.12448 4.18861 4.24824 4.38236 4.47506 4.55901 4.59012 4.60692 4.74811 4.75909 4.83120 4.84162 4.94243 4.94921 4.97847 5.09002 5.16685 5.27065 5.36669 5.44816 5.51144 5.53274 5.53896 6.03982 6.28428 6.54565 7.06346 7.21848 7.35310 8.11425 8.34965 9.28734 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.043532 B = 0.002208 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.046667 B =12680.719704 C =13031.297997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.616 5.616 4 C 0.116 3.884 5 C -0.110 4.110 6 H 0.150 0.850 7 C 0.527 3.473 8 O -0.575 6.575 9 N -0.709 5.709 10 C 0.138 3.862 11 C -0.094 4.094 12 H 0.080 0.920 13 C -0.137 4.137 14 C 0.155 3.845 15 N -0.742 5.742 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.075 4.075 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.271 1.271 24 C -0.138 4.138 25 C 0.510 3.490 26 O -0.578 6.578 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.133 0.867 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 -24.484 -1.526 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.349 5.349 4 C -0.006 4.006 5 C -0.132 4.132 6 H 0.168 0.832 7 C 0.313 3.687 8 O -0.455 6.455 9 N -0.361 5.361 10 C 0.013 3.987 11 C -0.113 4.113 12 H 0.099 0.901 13 C -0.194 4.194 14 C 0.028 3.972 15 N -0.385 5.385 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.196 1.196 24 C -0.179 4.179 25 C 0.299 3.701 26 O -0.458 6.458 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.254 0.746 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.209 0.791 43 H 0.060 0.940 44 H 0.151 0.849 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.882 -25.131 -1.348 27.419 hybrid contribution 0.342 1.322 -0.184 1.378 sum -10.540 -23.809 -1.531 26.083 Atomic orbital electron populations 1.22101 0.94687 1.03338 1.01953 1.21537 0.95202 0.80318 1.03715 1.48520 1.64703 1.14521 1.07128 1.22051 1.03765 0.88081 0.86747 1.22208 1.00610 0.96198 0.94151 0.83190 1.20414 0.83649 0.82004 0.82622 1.90726 1.50073 1.69272 1.35391 1.45880 1.39113 1.09892 1.41216 1.21139 0.91681 0.89990 0.95842 1.21333 1.00036 0.93745 0.96212 0.90124 1.21743 1.01415 1.01505 0.94773 1.20753 0.96633 0.83754 0.96072 1.42515 1.48967 1.02905 1.44107 1.19623 1.15440 0.88979 1.13668 0.90864 1.25535 1.01755 0.99099 1.00379 1.69799 1.42193 1.15869 1.33954 0.85163 0.77957 0.78392 0.78389 1.21518 1.22147 1.19573 1.22351 1.04595 0.95531 0.95386 1.21243 0.75999 0.88724 0.84105 1.90714 1.55635 1.76585 1.22869 0.94186 0.89824 0.91310 0.91365 0.87971 0.90234 0.87483 0.74633 0.91791 0.91768 0.90218 0.94172 0.93121 0.96166 0.96230 0.79067 0.94000 0.84863 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.24 71.98 0.74 -0.88 16 2 C 0.11 1.37 6.65 86.38 0.57 1.94 16 3 N -0.62 -9.12 2.93 -817.97 -2.40 -11.51 16 4 C 0.12 1.37 6.71 86.83 0.58 1.96 16 5 C -0.11 -1.16 3.54 -10.49 -0.04 -1.19 16 6 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 7 C 0.53 9.10 7.06 87.66 0.62 9.72 16 8 O -0.58 -14.80 15.50 -3.04 -0.05 -14.85 16 9 N -0.71 -11.45 5.28 -463.05 -2.45 -13.90 16 10 C 0.14 3.10 5.06 86.38 0.44 3.54 16 11 C -0.09 -2.53 2.46 -10.79 -0.03 -2.56 16 12 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.14 -3.54 8.94 71.98 0.64 -2.90 16 14 C 0.15 5.81 5.65 86.38 0.49 6.30 16 15 N -0.74 -36.32 5.33 -343.44 -1.83 -38.15 16 16 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 17 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.97 -58.11 13.06 21.65 0.28 -57.83 16 20 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C -0.14 -1.70 6.41 30.58 0.20 -1.50 16 25 C 0.51 9.88 8.02 87.90 0.71 10.58 16 26 O -0.58 -16.31 17.59 -3.05 -0.05 -16.37 16 27 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 1.03 7.92 -2.39 -0.02 1.01 16 31 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 1.23 6.96 -2.39 -0.02 1.22 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.42 4.54 7.65 -92.71 -0.71 3.83 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 37 H 0.08 1.46 7.18 -2.39 -0.02 1.44 16 38 H 0.04 1.30 7.18 -2.39 -0.02 1.28 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.38 19.34 6.85 -92.71 -0.63 18.70 16 43 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 44 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 1.43 7.89 -2.38 -0.02 1.41 16 Total: -1.00 -75.35 370.43 1.40 -73.95 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.36 Total: 22.39 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.23 Total: 8.52 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -6.39 Total: -121.39 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.10 Total: -31.21 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -75.35 1.40 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.902 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds