Wall clock time and date at job start Tue Mar 31 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47609 * 2 1 4 4 C 1.46759 * 124.34821 * 89.99641 * 3 2 1 5 5 C 1.54481 * 105.47319 * 196.99952 * 4 3 2 6 6 H 1.08994 * 110.96937 * 92.74626 * 5 4 3 7 7 C 1.50697 * 110.96853 * 216.46763 * 5 4 3 8 8 O 1.21280 * 120.00450 * 0.02562 * 7 5 4 9 9 N 1.34781 * 120.00106 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00367 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47113 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47375 * 305.00376 * 11 10 9 13 13 C 1.52997 * 109.47232 * 65.00243 * 11 10 9 14 14 C 1.53006 * 109.47164 * 185.00342 * 11 10 9 15 15 N 1.46497 * 109.47007 * 175.00315 * 14 11 10 16 16 C 1.36945 * 119.99639 * 179.97438 * 15 14 11 17 17 H 1.07995 * 120.00064 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00266 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00031 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47151 * 89.99500 * 20 18 16 22 22 H 1.48498 * 109.47201 * 209.99821 * 20 18 16 23 23 H 1.48504 * 109.46997 * 329.99474 * 20 18 16 24 24 C 1.54629 * 101.76749 * 334.58800 * 5 4 3 25 25 C 1.34418 * 124.34938 * 269.98434 * 3 2 1 26 26 O 1.21282 * 124.94263 * 359.60570 * 25 3 2 27 27 H 1.09001 * 109.47560 * 59.99707 * 1 2 3 28 28 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46989 * 299.99985 * 1 2 3 30 30 H 1.09006 * 109.47078 * 240.00361 * 2 1 3 31 31 H 1.09001 * 109.47560 * 120.00293 * 2 1 3 32 32 H 1.09000 * 110.24244 * 78.00670 * 4 3 2 33 33 H 1.09000 * 110.32590 * 316.04259 * 4 3 2 34 34 H 0.97004 * 119.99479 * 0.02562 * 9 7 5 35 35 H 1.08998 * 109.46647 * 60.00468 * 10 9 7 36 36 H 1.09002 * 109.47421 * 300.00442 * 10 9 7 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47153 * 299.99992 * 13 11 10 39 39 H 1.09001 * 109.47289 * 60.00075 * 13 11 10 40 40 H 1.09007 * 109.46744 * 294.99886 * 14 11 10 41 41 H 1.08995 * 109.46794 * 55.00131 * 14 11 10 42 42 H 0.96993 * 120.00553 * 359.97438 * 15 14 11 43 43 H 0.96997 * 120.00431 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.48630 * 143.47297 * 24 5 4 45 45 H 1.09002 * 110.48688 * 266.12128 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1618 1.2117 5 6 2.3535 3.6344 0.7486 6 1 1.3791 4.1131 0.8451 7 6 3.4044 4.3982 1.5124 8 8 4.0653 3.8372 2.3606 9 7 3.6106 5.7044 1.2522 10 6 4.6318 6.4471 1.9950 11 6 4.6611 7.8979 1.5101 12 1 4.8090 7.9172 0.4303 13 6 3.3348 8.5779 1.8554 14 6 5.8092 8.6416 2.1955 15 7 5.9124 9.9950 1.6441 16 6 6.8747 10.8518 2.1081 17 1 7.5577 10.5296 2.8801 18 6 6.9728 12.1339 1.5854 19 7 7.8980 12.9573 2.0309 20 14 5.7918 12.6909 0.2495 21 1 4.5925 13.3050 0.8737 22 1 6.4636 13.6897 -0.6202 23 1 5.3806 11.5206 -0.5670 24 6 2.7512 3.4818 -0.7379 25 6 2.2716 2.0961 -1.1098 26 8 2.1353 1.6894 -2.2442 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.2500 1.8635 1.6430 33 1 1.4942 2.0271 1.9394 34 1 3.0823 6.1530 0.5735 35 1 5.6067 5.9886 1.8295 36 1 4.3956 6.4246 3.0589 37 1 3.3558 9.6117 1.5104 38 1 2.5169 8.0481 1.3672 39 1 3.1869 8.5587 2.9352 40 1 5.6164 8.6995 3.2668 41 1 6.7430 8.1067 2.0227 42 1 5.2992 10.2842 0.9505 43 1 7.9663 13.8533 1.6659 44 1 2.2503 4.2349 -1.3460 45 1 3.8327 3.5548 -0.8529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:07 Heat of formation + Delta-G solvation = -66.872668 kcal Electronic energy + Delta-G solvation = -23782.507945 eV Core-core repulsion = 20220.977389 eV Total energy + Delta-G solvation = -3561.530556 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22099 -39.61669 -37.21726 -36.58744 -34.64334 -34.33354 -32.56473 -30.71913 -30.08085 -28.17708 -26.84295 -25.82813 -24.09762 -23.12982 -21.92878 -20.70375 -20.03213 -19.76346 -18.02210 -17.47787 -17.29022 -16.29761 -16.23227 -15.63654 -15.40983 -14.71554 -14.54172 -14.46956 -14.17394 -14.12431 -13.83729 -13.58572 -13.51394 -13.19161 -12.79189 -12.64600 -12.53528 -12.38749 -12.25139 -12.00709 -11.82817 -11.53476 -11.49961 -11.10799 -10.83282 -10.68930 -10.68638 -10.38144 -10.16098 -9.96729 -9.61523 -9.26368 -9.14895 -8.93720 -7.27129 -5.79700 -3.15729 2.16668 2.28828 2.47978 2.91170 3.33175 3.35103 3.41999 3.76962 3.88768 4.29291 4.40665 4.55397 4.57831 4.69262 4.70900 4.81204 4.91300 5.00961 5.02621 5.10049 5.16045 5.22573 5.26849 5.40870 5.45007 5.50168 5.59581 5.66918 5.70103 5.78122 5.80736 6.00366 6.09354 6.15306 6.26241 6.38524 6.59936 6.66355 6.68940 7.21924 7.75299 7.91121 7.96369 8.39039 9.17784 9.89785 10.09107 11.38659 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033103 B = 0.002402 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.651940 B =11653.711743 C =12054.446786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.117 3.883 5 C -0.125 4.125 6 H 0.118 0.882 7 C 0.523 3.477 8 O -0.534 6.534 9 N -0.720 5.720 10 C 0.126 3.874 11 C -0.115 4.115 12 H 0.077 0.923 13 C -0.144 4.144 14 C 0.165 3.835 15 N -0.754 5.754 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.145 4.145 25 C 0.520 3.480 26 O -0.530 6.530 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.402 0.598 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.029 0.971 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 -24.101 -2.856 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.354 5.354 4 C -0.007 4.007 5 C -0.147 4.147 6 H 0.136 0.864 7 C 0.308 3.692 8 O -0.411 6.411 9 N -0.371 5.371 10 C 0.002 3.998 11 C -0.134 4.134 12 H 0.095 0.905 13 C -0.201 4.201 14 C 0.037 3.963 15 N -0.400 5.400 16 C -0.375 4.375 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.186 4.186 25 C 0.308 3.692 26 O -0.406 6.406 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.518 -24.703 -2.692 29.839 hybrid contribution -1.060 0.896 -1.188 1.826 sum -17.578 -23.808 -3.880 29.847 Atomic orbital electron populations 1.22163 0.95623 1.02505 1.02518 1.21367 0.94425 0.80856 1.03406 1.48365 1.65814 1.14060 1.07185 1.21985 1.03638 0.88048 0.86981 1.22243 1.00342 0.96732 0.95352 0.86404 1.19996 0.83818 0.82192 0.83191 1.90736 1.48459 1.68464 1.33463 1.46034 1.39858 1.09971 1.41281 1.21446 0.91173 0.90896 0.96249 1.21615 0.97449 0.93029 1.01357 0.90513 1.21817 0.95366 1.01052 1.01863 1.20552 0.94048 0.85780 0.95929 1.42681 1.39835 1.10938 1.46565 1.19058 1.08161 0.92784 1.17463 0.89170 1.24685 0.98499 0.96423 0.99613 1.69695 1.35430 1.07335 1.45654 0.86546 0.81188 0.78201 0.82550 1.21066 1.21701 1.20398 1.22356 1.04635 0.96735 0.94850 1.20747 0.76482 0.87553 0.84443 1.90744 1.53374 1.75426 1.21047 0.92207 0.91278 0.92319 0.89875 0.90076 0.88786 0.89706 0.76362 0.90958 0.90933 0.91822 0.93627 0.92313 0.95095 0.95265 0.80630 0.93026 0.86996 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.16 0.38 -0.55 16 2 C 0.12 0.77 6.65 -4.04 -0.03 0.74 16 3 N -0.62 -4.86 2.93 -172.42 -0.51 -5.37 16 4 C 0.12 0.78 6.71 -3.12 -0.02 0.76 16 5 C -0.12 -0.78 3.54 -90.14 -0.32 -1.10 16 6 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 7 C 0.52 4.87 7.06 -10.98 -0.08 4.79 16 8 O -0.53 -7.02 15.50 5.56 0.09 -6.93 16 9 N -0.72 -6.25 5.28 -60.30 -0.32 -6.57 16 10 C 0.13 1.42 5.06 -4.04 -0.02 1.40 16 11 C -0.12 -1.49 2.46 -90.62 -0.22 -1.72 16 12 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.14 -1.74 8.94 37.16 0.33 -1.41 16 14 C 0.16 2.95 5.65 -4.04 -0.02 2.93 16 15 N -0.75 -17.18 5.13 -59.91 -0.31 -17.49 16 16 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 19 N -0.93 -29.10 13.97 55.49 0.78 -28.33 16 20 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 24 C -0.15 -1.01 6.41 -26.74 -0.17 -1.18 16 25 C 0.52 5.14 8.02 -10.86 -0.09 5.05 16 26 O -0.53 -7.30 17.59 5.56 0.10 -7.21 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.77 6.96 -51.93 -0.36 0.41 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.40 2.57 7.65 -40.82 -0.31 2.26 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.90 7.18 -51.93 -0.37 0.53 16 38 H 0.04 0.42 7.18 -51.93 -0.37 0.04 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.36 7.93 4.71 -40.82 -0.19 7.74 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.11 0.81 7.89 -51.93 -0.41 0.40 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -35.39 367.32 -7.38 -42.77 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.52 Total: 3.92 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.51 Total: 2.74 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.36 Total: -57.75 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.18 Total: -14.14 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.39 -7.38 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.100 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds