Wall clock time and date at job start Tue Mar 31 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47609 * 2 1 4 4 C 1.46759 * 124.34821 * 89.99641 * 3 2 1 5 5 C 1.54481 * 105.47319 * 196.99952 * 4 3 2 6 6 H 1.08994 * 110.96937 * 92.74626 * 5 4 3 7 7 C 1.50697 * 110.96853 * 216.46763 * 5 4 3 8 8 O 1.21280 * 120.00450 * 0.02562 * 7 5 4 9 9 N 1.34781 * 120.00106 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00367 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47113 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47375 * 305.00376 * 11 10 9 13 13 C 1.52997 * 109.47232 * 65.00243 * 11 10 9 14 14 C 1.53006 * 109.47164 * 185.00342 * 11 10 9 15 15 N 1.46497 * 109.47007 * 175.00315 * 14 11 10 16 16 C 1.36945 * 119.99639 * 179.97438 * 15 14 11 17 17 H 1.07995 * 120.00064 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99933 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00266 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00031 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47151 * 89.99500 * 20 18 16 22 22 H 1.48498 * 109.47201 * 209.99821 * 20 18 16 23 23 H 1.48504 * 109.46997 * 329.99474 * 20 18 16 24 24 C 1.54629 * 101.76749 * 334.58800 * 5 4 3 25 25 C 1.34418 * 124.34938 * 269.98434 * 3 2 1 26 26 O 1.21282 * 124.94263 * 359.60570 * 25 3 2 27 27 H 1.09001 * 109.47560 * 59.99707 * 1 2 3 28 28 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46989 * 299.99985 * 1 2 3 30 30 H 1.09006 * 109.47078 * 240.00361 * 2 1 3 31 31 H 1.09001 * 109.47560 * 120.00293 * 2 1 3 32 32 H 1.09000 * 110.24244 * 78.00670 * 4 3 2 33 33 H 1.09000 * 110.32590 * 316.04259 * 4 3 2 34 34 H 0.97004 * 119.99479 * 0.02562 * 9 7 5 35 35 H 1.08998 * 109.46647 * 60.00468 * 10 9 7 36 36 H 1.09002 * 109.47421 * 300.00442 * 10 9 7 37 37 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47153 * 299.99992 * 13 11 10 39 39 H 1.09001 * 109.47289 * 60.00075 * 13 11 10 40 40 H 1.09007 * 109.46744 * 294.99886 * 14 11 10 41 41 H 1.08995 * 109.46794 * 55.00131 * 14 11 10 42 42 H 0.96993 * 120.00553 * 359.97438 * 15 14 11 43 43 H 0.96997 * 120.00431 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.48630 * 143.47297 * 24 5 4 45 45 H 1.09002 * 110.48688 * 266.12128 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1618 1.2117 5 6 2.3535 3.6344 0.7486 6 1 1.3791 4.1131 0.8451 7 6 3.4044 4.3982 1.5124 8 8 4.0653 3.8372 2.3606 9 7 3.6106 5.7044 1.2522 10 6 4.6318 6.4471 1.9950 11 6 4.6611 7.8979 1.5101 12 1 4.8090 7.9172 0.4303 13 6 3.3348 8.5779 1.8554 14 6 5.8092 8.6416 2.1955 15 7 5.9124 9.9950 1.6441 16 6 6.8747 10.8518 2.1081 17 1 7.5577 10.5296 2.8801 18 6 6.9728 12.1339 1.5854 19 7 7.8980 12.9573 2.0309 20 14 5.7918 12.6909 0.2495 21 1 4.5925 13.3050 0.8737 22 1 6.4636 13.6897 -0.6202 23 1 5.3806 11.5206 -0.5670 24 6 2.7512 3.4818 -0.7379 25 6 2.2716 2.0961 -1.1098 26 8 2.1353 1.6894 -2.2442 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.2500 1.8635 1.6430 33 1 1.4942 2.0271 1.9394 34 1 3.0823 6.1530 0.5735 35 1 5.6067 5.9886 1.8295 36 1 4.3956 6.4246 3.0589 37 1 3.3558 9.6117 1.5104 38 1 2.5169 8.0481 1.3672 39 1 3.1869 8.5587 2.9352 40 1 5.6164 8.6995 3.2668 41 1 6.7430 8.1067 2.0227 42 1 5.2992 10.2842 0.9505 43 1 7.9663 13.8533 1.6659 44 1 2.2503 4.2349 -1.3460 45 1 3.8327 3.5548 -0.8529 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:06 Heat of formation + Delta-G solvation = -93.026199 kcal Electronic energy + Delta-G solvation = -23783.642047 eV Core-core repulsion = 20220.977389 eV Total energy + Delta-G solvation = -3562.664658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89394 -40.41533 -38.37734 -37.41382 -36.02742 -34.95754 -34.07281 -32.38816 -30.74171 -28.78686 -27.85175 -27.25756 -24.90184 -24.01817 -23.35326 -21.62476 -21.07498 -20.42704 -19.61878 -18.45005 -18.00643 -17.21456 -16.96978 -16.52405 -16.45296 -16.09459 -15.67562 -15.54183 -15.07727 -14.96540 -14.74591 -14.70148 -14.43280 -14.18005 -13.95916 -13.70936 -13.56453 -13.32081 -13.17092 -12.86988 -12.85104 -12.52842 -12.39471 -12.24249 -12.05437 -11.99646 -11.94994 -11.73657 -11.65496 -11.17568 -10.97140 -10.77444 -10.08058 -9.78670 -9.28687 -8.01791 -5.35763 1.38248 1.43385 1.45301 1.50708 1.56720 1.86648 2.20515 2.49727 3.17230 3.29457 3.33292 3.58476 3.74139 3.87957 3.98181 4.04490 4.10337 4.14562 4.21560 4.24295 4.46873 4.55433 4.56468 4.60041 4.73656 4.74509 4.82540 4.83921 4.93850 4.94469 4.96991 5.06985 5.13415 5.26512 5.32640 5.41690 5.51374 5.53176 5.76709 6.03568 6.21840 6.54180 7.05661 7.09233 7.22218 7.84576 8.04833 9.19775 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033103 B = 0.002402 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.651940 B =11653.711743 C =12054.446786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.616 5.616 4 C 0.115 3.885 5 C -0.109 4.109 6 H 0.153 0.847 7 C 0.526 3.474 8 O -0.575 6.575 9 N -0.709 5.709 10 C 0.136 3.864 11 C -0.099 4.099 12 H 0.087 0.913 13 C -0.142 4.142 14 C 0.157 3.843 15 N -0.754 5.754 16 C -0.237 4.237 17 H 0.053 0.947 18 C -0.069 4.069 19 N -0.986 5.986 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.246 1.246 24 C -0.139 4.139 25 C 0.510 3.490 26 O -0.578 6.578 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.025 0.975 41 H 0.022 0.978 42 H 0.368 0.632 43 H 0.258 0.742 44 H 0.135 0.865 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 -24.955 -3.736 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.349 5.349 4 C -0.007 4.007 5 C -0.131 4.131 6 H 0.170 0.830 7 C 0.313 3.687 8 O -0.455 6.455 9 N -0.361 5.361 10 C 0.012 3.988 11 C -0.118 4.118 12 H 0.105 0.895 13 C -0.200 4.200 14 C 0.031 3.969 15 N -0.400 5.400 16 C -0.368 4.368 17 H 0.071 0.929 18 C -0.260 4.260 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.170 1.170 24 C -0.179 4.179 25 C 0.299 3.701 26 O -0.459 6.459 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.255 0.745 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.040 0.960 42 H 0.202 0.798 43 H 0.066 0.934 44 H 0.153 0.847 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.548 -25.606 -3.558 32.410 hybrid contribution -0.047 1.054 -0.784 1.314 sum -19.595 -24.552 -4.342 31.712 Atomic orbital electron populations 1.22097 0.94629 1.03338 1.01985 1.21534 0.95244 0.80348 1.03677 1.48521 1.64692 1.14512 1.07159 1.22058 1.03743 0.88178 0.86747 1.22210 1.00684 0.96135 0.94027 0.82953 1.20423 0.83656 0.82045 0.82615 1.90735 1.50028 1.69270 1.35435 1.45849 1.39211 1.09824 1.41176 1.21133 0.91538 0.89941 0.96219 1.21401 0.95855 0.93293 1.01239 0.89494 1.21817 0.95829 1.00298 1.02019 1.20734 0.96102 0.84045 0.96064 1.42637 1.38684 1.12013 1.46707 1.19035 1.08087 0.93608 1.16047 0.92919 1.25595 1.00880 0.96607 1.02891 1.69897 1.38079 1.07777 1.47848 0.85355 0.78510 0.78350 0.79247 1.20163 1.22516 1.17016 1.22356 1.04528 0.95509 0.95486 1.21260 0.75998 0.88769 0.84096 1.90714 1.55641 1.76609 1.22900 0.94161 0.89866 0.91240 0.91434 0.88012 0.90357 0.87415 0.74528 0.92148 0.91507 0.93649 0.89800 0.92751 0.95680 0.96005 0.79768 0.93357 0.84741 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.24 71.98 0.74 -0.76 16 2 C 0.11 1.30 6.65 86.38 0.57 1.88 16 3 N -0.62 -8.65 2.93 -817.99 -2.40 -11.05 16 4 C 0.12 1.25 6.71 86.83 0.58 1.83 16 5 C -0.11 -0.99 3.54 -10.48 -0.04 -1.02 16 6 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 7 C 0.53 8.28 7.06 87.66 0.62 8.90 16 8 O -0.58 -14.19 15.50 -3.03 -0.05 -14.23 16 9 N -0.71 -9.84 5.28 -463.07 -2.45 -12.29 16 10 C 0.14 2.76 5.06 86.38 0.44 3.20 16 11 C -0.10 -2.30 2.46 -10.79 -0.03 -2.33 16 12 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 13 C -0.14 -2.96 8.94 71.98 0.64 -2.32 16 14 C 0.16 5.52 5.65 86.38 0.49 6.01 16 15 N -0.75 -33.62 5.13 -343.44 -1.76 -35.38 16 16 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.99 -63.10 13.97 21.65 0.30 -62.80 16 20 Si 0.96 44.14 27.74 68.60 1.90 46.05 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.25 -9.91 6.52 99.48 0.65 -9.26 16 24 C -0.14 -1.55 6.41 30.59 0.20 -1.35 16 25 C 0.51 9.45 8.02 87.90 0.71 10.16 16 26 O -0.58 -15.95 17.59 -3.04 -0.05 -16.00 16 27 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.99 7.92 -2.38 -0.02 0.97 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.16 6.96 -2.39 -0.02 1.14 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 3.33 7.65 -92.71 -0.71 2.62 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.13 7.18 -2.38 -0.02 1.11 16 38 H 0.08 1.11 7.18 -2.39 -0.02 1.09 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.37 15.26 4.71 -92.71 -0.44 14.82 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.11 1.33 7.89 -2.39 -0.02 1.31 16 Total: -1.00 -80.22 367.32 1.54 -78.68 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.22 Total: 18.88 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.27 Total: 8.14 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -6.31 Total: -121.51 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.10 Total: -30.23 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.05 kcal Total: -80.22 1.54 -78.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.349 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds