Wall clock time and date at job start Tue Mar 31 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47058 * 2 1 4 4 C 1.46759 * 124.35118 * 270.00099 * 3 2 1 5 5 C 1.54485 * 105.47189 * 162.96141 * 4 3 2 6 6 H 1.09000 * 110.96819 * 267.28988 * 5 4 3 7 7 C 1.50704 * 110.96852 * 143.53439 * 5 4 3 8 8 O 1.21288 * 119.99935 * 6.16500 * 7 5 4 9 9 N 1.34777 * 119.99871 * 186.16516 * 7 5 4 10 10 C 1.46505 * 119.99689 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.46629 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47130 * 304.99797 * 11 10 9 13 13 C 1.52998 * 109.47486 * 65.00395 * 11 10 9 14 14 C 1.52999 * 109.46904 * 185.00106 * 11 10 9 15 15 N 1.46501 * 109.47443 * 175.00125 * 14 11 10 16 16 C 1.36934 * 120.00194 * 180.02562 * 15 14 11 17 17 H 1.08000 * 119.99991 * 0.02562 * 16 15 14 18 18 C 1.38819 * 120.00006 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99719 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47390 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47097 * 119.99923 * 20 18 16 23 23 H 1.48503 * 109.46965 * 239.99637 * 20 18 16 24 24 C 1.54627 * 101.76594 * 25.41394 * 5 4 3 25 25 C 1.34426 * 124.34839 * 89.97254 * 3 2 1 26 26 O 1.21284 * 124.94089 * 0.39550 * 25 3 2 27 27 H 1.08990 * 109.47501 * 299.99780 * 1 2 3 28 28 H 1.09000 * 109.46946 * 60.00457 * 1 2 3 29 29 H 1.09001 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47676 * 240.00626 * 2 1 3 31 31 H 1.09001 * 109.47468 * 119.99589 * 2 1 3 32 32 H 1.08995 * 110.24700 * 43.95855 * 4 3 2 33 33 H 1.08999 * 110.24330 * 281.95626 * 4 3 2 34 34 H 0.97000 * 120.00042 * 359.97438 * 9 7 5 35 35 H 1.08999 * 109.47269 * 299.99856 * 10 9 7 36 36 H 1.09004 * 109.47101 * 60.00007 * 10 9 7 37 37 H 1.09007 * 109.46764 * 299.99811 * 13 11 10 38 38 H 1.08994 * 109.47532 * 59.99302 * 13 11 10 39 39 H 1.08996 * 109.47431 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47157 * 295.00217 * 14 11 10 41 41 H 1.09000 * 109.47219 * 54.99938 * 14 11 10 42 42 H 0.97003 * 120.00012 * 359.97438 * 15 14 11 43 43 H 0.96994 * 119.99248 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.48412 * 93.88154 * 24 5 4 45 45 H 1.09004 * 110.48022 * 216.39067 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 -1.2116 5 6 2.3523 3.6347 -0.7486 6 1 1.3773 4.1125 -0.8450 7 6 3.4030 4.3991 -1.5121 8 8 3.9862 3.8711 -2.4352 9 7 3.6946 5.6694 -1.1690 10 6 4.7164 6.4123 -1.9109 11 6 4.8520 7.8183 -1.3230 12 1 3.8772 8.3060 -1.3190 13 6 5.3808 7.7234 0.1095 14 6 5.8272 8.6348 -2.1735 15 7 5.8665 10.0145 -1.6826 16 6 6.6749 10.9358 -2.2932 17 1 7.2833 10.6453 -3.1370 18 6 6.7125 12.2430 -1.8277 19 7 5.9706 12.5971 -0.7997 20 14 7.8158 13.4996 -2.6602 21 1 8.5424 12.8538 -3.7828 22 1 6.9879 14.6161 -3.1829 23 1 8.7948 14.0277 -1.6763 24 6 2.7495 3.4824 0.7380 25 6 2.2706 2.0965 1.1099 26 8 2.1336 1.6900 2.2443 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.4935 2.0263 -1.9384 33 1 3.2502 1.8643 -1.6426 34 1 3.2279 6.0918 -0.4310 35 1 5.6715 5.8928 -1.8332 36 1 4.4252 6.4828 -2.9589 37 1 4.6861 7.1417 0.7155 38 1 6.3556 7.2357 0.1055 39 1 5.4779 8.7251 0.5282 40 1 6.8230 8.1966 -2.1060 41 1 5.4970 8.6280 -3.2123 42 1 5.3192 10.2757 -0.9254 43 1 5.9967 13.5106 -0.4747 44 1 3.8308 3.5562 0.8533 45 1 2.2495 4.2368 1.3455 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:08 Heat of formation + Delta-G solvation = -71.556284 kcal Electronic energy + Delta-G solvation = -23739.955511 eV Core-core repulsion = 20178.221858 eV Total energy + Delta-G solvation = -3561.733653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17322 -39.55162 -37.07766 -36.52247 -34.53795 -34.26311 -32.52683 -30.42266 -29.83813 -28.11734 -26.68423 -25.55110 -24.07783 -23.16900 -22.23790 -20.60903 -19.83262 -19.70147 -17.88608 -17.35220 -16.99968 -16.22399 -16.14753 -15.57996 -15.33341 -14.70295 -14.51792 -14.42063 -14.13947 -13.98049 -13.67368 -13.56561 -13.46846 -13.01129 -12.75114 -12.65439 -12.37724 -12.35333 -12.12748 -11.92558 -11.78662 -11.50167 -11.10157 -10.95716 -10.75860 -10.62366 -10.50120 -10.33523 -10.06262 -9.90671 -9.70185 -9.19307 -9.10813 -8.90987 -6.95273 -5.79918 -3.08360 2.21074 2.35377 2.51603 2.98454 3.41737 3.47784 3.49786 3.81125 3.92602 4.35168 4.45014 4.56666 4.61466 4.74035 4.77200 4.94316 4.99198 5.06510 5.14366 5.15329 5.26450 5.30874 5.32616 5.44130 5.48869 5.54979 5.73303 5.74743 5.89972 5.91311 6.05139 6.12916 6.18173 6.32382 6.38119 6.61188 6.69930 6.72668 6.81865 7.30063 7.68519 7.79031 7.97968 8.39248 9.50663 10.07609 10.42170 11.43103 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.043068 B = 0.002224 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.973910 B =12586.756529 C =12975.471686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.118 3.882 5 C -0.125 4.125 6 H 0.120 0.880 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.719 5.719 10 C 0.125 3.875 11 C -0.111 4.111 12 H 0.077 0.923 13 C -0.142 4.142 14 C 0.160 3.840 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.147 4.147 25 C 0.520 3.480 26 O -0.530 6.530 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.111 0.889 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 -23.515 1.236 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.005 4.005 5 C -0.147 4.147 6 H 0.138 0.862 7 C 0.308 3.692 8 O -0.414 6.414 9 N -0.370 5.370 10 C 0.002 3.998 11 C -0.130 4.130 12 H 0.095 0.905 13 C -0.200 4.200 14 C 0.032 3.968 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.187 4.187 25 C 0.308 3.692 26 O -0.406 6.406 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.237 0.763 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.020 -24.112 1.038 26.531 hybrid contribution 0.126 1.178 0.075 1.188 sum -10.893 -22.934 1.113 25.414 Atomic orbital electron populations 1.22163 0.95627 1.02482 1.02542 1.21364 0.94433 0.80878 1.03364 1.48379 1.65846 1.14044 1.07213 1.21968 1.03538 0.88071 0.86928 1.22254 1.00465 0.96682 0.95255 0.86233 1.20001 0.83224 0.81970 0.84014 1.90733 1.52297 1.68533 1.29815 1.46046 1.41241 1.13362 1.36361 1.21471 0.90985 0.91614 0.95732 1.21558 1.01134 0.93678 0.96616 0.90477 1.21798 1.00242 1.02759 0.95152 1.20575 0.95277 0.86114 0.94828 1.42343 1.52526 1.04278 1.38405 1.19282 1.17287 0.89907 1.10506 0.91086 1.24748 1.00357 0.97438 0.98545 1.69665 1.43378 1.18067 1.27154 0.86105 0.79889 0.81607 0.78526 1.20536 1.21878 1.21872 1.22373 1.04634 0.96726 0.95001 1.20751 0.76467 0.87561 0.84432 1.90742 1.53350 1.75458 1.21049 0.92185 0.92312 0.91306 0.90108 0.89895 0.89677 0.88977 0.76284 0.91168 0.91145 0.93869 0.92792 0.91098 0.95990 0.96132 0.78202 0.93562 0.87100 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.12 0.80 6.65 -4.04 -0.03 0.77 16 3 N -0.62 -5.03 2.93 -172.41 -0.51 -5.54 16 4 C 0.12 0.84 6.66 -3.12 -0.02 0.82 16 5 C -0.12 -0.85 3.54 -90.14 -0.32 -1.17 16 6 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 7 C 0.52 5.18 7.07 -10.98 -0.08 5.11 16 8 O -0.54 -7.33 15.57 5.55 0.09 -7.25 16 9 N -0.72 -6.82 5.23 -60.29 -0.32 -7.14 16 10 C 0.13 1.52 5.06 -4.04 -0.02 1.50 16 11 C -0.11 -1.57 2.46 -90.62 -0.22 -1.79 16 12 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.14 -1.94 8.94 37.16 0.33 -1.61 16 14 C 0.16 3.04 5.65 -4.04 -0.02 3.02 16 15 N -0.73 -17.84 5.33 -59.91 -0.32 -18.16 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.15 -1.06 6.37 -26.75 -0.17 -1.23 16 25 C 0.52 5.27 8.02 -10.86 -0.09 5.19 16 26 O -0.53 -7.42 17.59 5.55 0.10 -7.32 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.78 7.06 -51.93 -0.37 0.41 16 34 H 0.40 2.96 7.65 -40.82 -0.31 2.64 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 9.75 6.85 -40.82 -0.28 9.47 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 45 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -34.35 370.48 -7.74 -42.09 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.57 Total: 4.84 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.50 Total: 2.76 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.42 Total: -57.90 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.18 Total: -14.57 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.35 -7.74 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.464 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds