Wall clock time and date at job start Tue Mar 31 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.36934 * 119.99594 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00731 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99751 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99681 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46999 * 90.00100 * 10 8 6 12 12 H 1.48498 * 109.47119 * 209.99823 * 10 8 6 13 13 H 1.48506 * 109.46976 * 330.00001 * 10 8 6 14 14 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 15 15 C 1.46502 * 119.99711 * 60.00297 * 14 2 1 16 16 C 1.34769 * 120.00163 * 240.00131 * 14 2 1 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 2 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 2 19 19 C 1.53004 * 109.46861 * 180.02562 * 18 16 14 20 20 N 1.46505 * 109.46869 * 179.97438 * 19 18 16 21 21 C 1.46760 * 124.34850 * 269.72558 * 20 19 18 22 22 C 1.54661 * 105.38275 * 162.85781 * 21 20 19 23 23 C 1.54631 * 101.68420 * 25.76670 * 22 21 20 24 24 C 1.34421 * 124.35021 * 90.02648 * 20 19 18 25 25 O 1.21286 * 124.94110 * 0.42848 * 24 20 19 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 31 31 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 32 32 H 0.96997 * 119.99598 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47565 * 90.00263 * 15 14 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 15 14 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 15 14 2 36 36 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 37 37 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 38 38 H 1.08994 * 109.47252 * 299.99766 * 19 18 16 39 39 H 1.09004 * 109.47385 * 59.99984 * 19 18 16 40 40 H 1.09005 * 110.24386 * 281.98341 * 21 20 19 41 41 H 1.08992 * 110.24751 * 43.98166 * 21 20 19 42 42 H 1.08998 * 111.18792 * 267.58867 * 22 21 20 43 43 H 1.08995 * 110.82320 * 143.77440 * 22 21 20 44 44 H 1.09007 * 110.48164 * 216.31366 * 23 22 21 45 45 H 1.08989 * 110.60155 * 93.72528 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2069 7 1 3.6467 -1.8445 -3.0514 8 6 5.5673 -1.5378 -2.1516 9 7 6.2219 -1.0428 -1.1226 10 14 6.5001 -2.3726 -3.5381 11 1 6.8617 -1.3656 -4.5678 12 1 7.7358 -2.9950 -2.9990 13 1 5.6441 -3.4207 -4.1498 14 7 2.0184 -0.6906 1.1961 15 6 1.6645 -2.0933 1.4279 16 6 2.7932 -0.0357 2.0832 17 8 3.0858 1.1256 1.8917 18 6 3.2951 -0.7460 3.3139 19 6 4.1447 0.2158 4.1471 20 7 4.6321 -0.4745 5.3438 21 6 3.9207 -0.5098 6.6269 22 6 4.5592 -1.6752 7.4182 23 6 5.9704 -1.7442 6.7899 24 6 5.7912 -1.1522 5.4093 25 8 6.5789 -1.2713 4.4948 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6055 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1371 31 1 3.9824 -0.4621 -0.4320 32 1 7.1886 -1.1118 -1.0841 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 2.4471 -1.0881 3.9072 37 1 3.9005 -1.6025 3.0176 38 1 4.9927 0.5584 3.5541 39 1 3.5390 1.0722 4.4435 40 1 4.0574 0.4312 7.1600 41 1 2.8601 -0.7018 6.4650 42 1 4.0146 -2.6056 7.2573 43 1 4.6163 -1.4370 8.4802 44 1 6.3070 -2.7787 6.7206 45 1 6.6779 -1.1519 7.3701 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753726968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:53 Heat of formation + Delta-G solvation = -53.750314 kcal Electronic energy + Delta-G solvation = -25017.664258 eV Core-core repulsion = 21456.702730 eV Total energy + Delta-G solvation = -3560.961528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43254 -39.57993 -36.52090 -36.27388 -33.98267 -33.72306 -31.93284 -30.19960 -29.48622 -27.67632 -26.62111 -25.57534 -24.43792 -22.50624 -22.05006 -20.73203 -19.31376 -18.61495 -17.26811 -17.00068 -16.72166 -16.13394 -15.76093 -15.57228 -15.07269 -14.59511 -13.92193 -13.81625 -13.76332 -13.63595 -13.30385 -13.11809 -13.05277 -12.76367 -12.45105 -12.40252 -12.23388 -12.02932 -11.87609 -11.79029 -11.69714 -11.40781 -11.23650 -10.97787 -10.78819 -10.69562 -10.40773 -9.97829 -9.72942 -9.61852 -9.42225 -8.80246 -8.73299 -8.19931 -6.81863 -5.63868 -2.94267 2.62529 2.89185 3.05955 3.46785 3.50212 3.53990 3.57142 4.22635 4.26367 4.57097 4.66449 4.82737 4.90814 5.03065 5.09112 5.24002 5.27652 5.34113 5.36822 5.42815 5.44531 5.51782 5.58837 5.60034 5.67591 5.72197 5.75537 5.93462 6.01235 6.10181 6.13710 6.17646 6.22814 6.42536 6.52253 6.54026 6.78919 7.03902 7.13814 7.77241 7.78693 8.22901 8.52843 8.58872 9.64053 10.22905 10.57998 11.57829 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.004597 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.923559 B = 6089.745704 C = 7764.836110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.145 3.855 5 N -0.728 5.728 6 C -0.245 4.245 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.925 5.925 10 Si 0.905 3.095 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.597 5.597 15 C 0.080 3.920 16 C 0.523 3.477 17 O -0.543 6.543 18 C -0.152 4.152 19 C 0.143 3.857 20 N -0.622 5.622 21 C 0.101 3.899 22 C -0.131 4.131 23 C -0.156 4.156 24 C 0.509 3.491 25 O -0.516 6.516 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -1.509 19.493 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.376 4.376 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.573 5.573 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.330 5.330 15 C -0.063 4.063 16 C 0.311 3.689 17 O -0.420 6.420 18 C -0.193 4.193 19 C 0.021 3.979 20 N -0.357 5.357 21 C -0.022 4.022 22 C -0.169 4.169 23 C -0.196 4.196 24 C 0.296 3.704 25 O -0.390 6.390 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.221 0.779 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.040 -1.011 18.683 21.724 hybrid contribution 0.630 -0.552 -0.592 1.026 sum -10.411 -1.563 18.090 20.930 Atomic orbital electron populations 1.22056 0.95307 1.01932 1.01994 1.21385 0.93110 0.98572 0.84801 0.88205 1.20985 0.87210 0.96638 0.93559 1.42295 0.99633 1.70138 1.25184 1.19177 0.89417 1.29813 0.99220 0.91370 1.24768 0.96469 1.01609 0.97942 1.69683 1.07246 1.50368 1.29977 0.86232 0.79608 0.78990 0.81581 1.21761 1.21796 1.20864 1.47651 1.50663 1.12185 1.22456 1.21721 1.01399 0.82376 1.00792 1.20272 0.77638 0.86785 0.84213 1.90689 1.57175 1.17214 1.76934 1.21992 1.00977 1.01114 0.95262 1.21103 0.99418 0.93098 0.84321 1.48350 1.21886 1.53640 1.11858 1.22105 0.97130 0.99005 0.83975 1.22618 0.95264 0.98935 1.00111 1.22337 0.98700 1.03713 0.94841 1.20975 0.81027 0.78423 0.90014 1.90841 1.46019 1.59447 1.42716 0.92713 0.92422 0.91426 0.96352 0.95616 0.77931 0.93437 0.91661 0.91903 0.91285 0.89409 0.88240 0.88645 0.89750 0.91077 0.90466 0.89955 0.89332 0.88131 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.17 37.16 0.34 -1.65 16 2 C 0.12 2.19 2.80 -67.93 -0.19 2.00 16 3 H 0.10 2.00 6.90 -51.93 -0.36 1.65 16 4 C 0.14 3.03 5.56 -4.04 -0.02 3.00 16 5 N -0.73 -19.59 5.43 -59.90 -0.33 -19.92 16 6 C -0.25 -7.20 9.99 -15.06 -0.15 -7.35 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.92 -30.02 13.06 55.49 0.72 -29.29 16 10 Si 0.90 23.50 29.55 -169.99 -5.02 18.47 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.65 7.11 56.52 0.40 -7.24 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 N -0.60 -10.06 2.24 -173.93 -0.39 -10.45 16 15 C 0.08 1.09 9.40 59.85 0.56 1.66 16 16 C 0.52 9.48 7.38 -10.99 -0.08 9.40 16 17 O -0.54 -11.71 15.31 5.56 0.09 -11.63 16 18 C -0.15 -2.21 4.58 -27.88 -0.13 -2.34 16 19 C 0.14 2.07 5.22 -4.04 -0.02 2.04 16 20 N -0.62 -7.57 2.93 -172.30 -0.51 -8.07 16 21 C 0.10 0.73 7.36 -3.03 -0.02 0.71 16 22 C -0.13 -0.75 7.19 -25.00 -0.18 -0.93 16 23 C -0.16 -1.36 6.86 -26.74 -0.18 -1.54 16 24 C 0.51 7.31 8.02 -10.86 -0.09 7.22 16 25 O -0.52 -10.50 17.59 5.55 0.10 -10.40 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.39 11.33 7.06 -40.82 -0.29 11.04 16 32 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.67 6.44 -51.92 -0.33 0.33 16 35 H 0.07 0.80 6.43 -51.93 -0.33 0.46 16 36 H 0.09 0.95 7.40 -51.93 -0.38 0.57 16 37 H 0.10 1.65 8.11 -51.93 -0.42 1.23 16 38 H 0.10 1.76 7.88 -51.93 -0.41 1.36 16 39 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 45 H 0.10 0.75 8.14 -51.94 -0.42 0.33 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -38.55 366.84 -7.54 -46.09 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.48 Total: 7.88 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.26 Total: 11.79 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.50 Total: -67.73 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.18 Total: -22.03 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.55 -7.54 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753726968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.658 kcal (2) G-P(sol) polarization free energy of solvation -38.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds