Wall clock time and date at job start Tue Mar 31 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.36934 * 119.99594 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00731 * 359.97438 * 6 5 4 8 8 C 1.38821 * 119.99751 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99681 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46999 * 90.00100 * 10 8 6 12 12 H 1.48498 * 109.47119 * 209.99823 * 10 8 6 13 13 H 1.48506 * 109.46976 * 330.00001 * 10 8 6 14 14 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 15 15 C 1.46502 * 119.99711 * 60.00297 * 14 2 1 16 16 C 1.34769 * 120.00163 * 240.00131 * 14 2 1 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 2 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 2 19 19 C 1.53004 * 109.46861 * 180.02562 * 18 16 14 20 20 N 1.46505 * 109.46869 * 179.97438 * 19 18 16 21 21 C 1.46760 * 124.34850 * 269.72558 * 20 19 18 22 22 C 1.54661 * 105.38275 * 162.85781 * 21 20 19 23 23 C 1.54631 * 101.68420 * 25.76670 * 22 21 20 24 24 C 1.34421 * 124.35021 * 90.02648 * 20 19 18 25 25 O 1.21286 * 124.94110 * 0.42848 * 24 20 19 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 31 31 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 32 32 H 0.96997 * 119.99598 * 180.02562 * 9 8 6 33 33 H 1.08993 * 109.47565 * 90.00263 * 15 14 2 34 34 H 1.09007 * 109.46761 * 210.00296 * 15 14 2 35 35 H 1.09002 * 109.46792 * 329.99948 * 15 14 2 36 36 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 37 37 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 38 38 H 1.08994 * 109.47252 * 299.99766 * 19 18 16 39 39 H 1.09004 * 109.47385 * 59.99984 * 19 18 16 40 40 H 1.09005 * 110.24386 * 281.98341 * 21 20 19 41 41 H 1.08992 * 110.24751 * 43.98166 * 21 20 19 42 42 H 1.08998 * 111.18792 * 267.58867 * 22 21 20 43 43 H 1.08995 * 110.82320 * 143.77440 * 22 21 20 44 44 H 1.09007 * 110.48164 * 216.31366 * 23 22 21 45 45 H 1.08989 * 110.60155 * 93.72528 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1837 -1.4387 -2.2069 7 1 3.6467 -1.8445 -3.0514 8 6 5.5673 -1.5378 -2.1516 9 7 6.2219 -1.0428 -1.1226 10 14 6.5001 -2.3726 -3.5381 11 1 6.8617 -1.3656 -4.5678 12 1 7.7358 -2.9950 -2.9990 13 1 5.6441 -3.4207 -4.1498 14 7 2.0184 -0.6906 1.1961 15 6 1.6645 -2.0933 1.4279 16 6 2.7932 -0.0357 2.0832 17 8 3.0858 1.1256 1.8917 18 6 3.2951 -0.7460 3.3139 19 6 4.1447 0.2158 4.1471 20 7 4.6321 -0.4745 5.3438 21 6 3.9207 -0.5098 6.6269 22 6 4.5592 -1.6752 7.4182 23 6 5.9704 -1.7442 6.7899 24 6 5.7912 -1.1522 5.4093 25 8 6.5789 -1.2713 4.4948 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.6055 -1.7197 -1.2953 30 1 1.7516 -0.1582 -2.1371 31 1 3.9824 -0.4621 -0.4320 32 1 7.1886 -1.1118 -1.0841 33 1 2.4158 -2.7377 0.9716 34 1 1.6239 -2.2853 2.5001 35 1 0.6905 -2.3002 0.9845 36 1 2.4471 -1.0881 3.9072 37 1 3.9005 -1.6025 3.0176 38 1 4.9927 0.5584 3.5541 39 1 3.5390 1.0722 4.4435 40 1 4.0574 0.4312 7.1600 41 1 2.8601 -0.7018 6.4650 42 1 4.0146 -2.6056 7.2573 43 1 4.6163 -1.4370 8.4802 44 1 6.3070 -2.7787 6.7206 45 1 6.6779 -1.1519 7.3701 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753726968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:53 Heat of formation + Delta-G solvation = -82.423497 kcal Electronic energy + Delta-G solvation = -25018.907621 eV Core-core repulsion = 21456.702730 eV Total energy + Delta-G solvation = -3562.204891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50839 -40.90826 -37.99157 -37.47558 -35.87067 -34.84794 -33.55436 -31.98548 -30.59165 -28.42828 -27.83403 -27.39054 -25.65397 -24.45292 -22.70691 -22.16471 -20.38152 -20.03991 -19.13682 -18.51011 -17.66745 -17.25983 -17.05284 -16.95516 -16.53423 -16.19245 -15.44167 -15.32082 -15.03449 -14.82803 -14.66195 -14.39333 -14.09975 -13.93712 -13.80372 -13.67595 -13.40577 -13.29133 -13.18313 -12.97675 -12.90082 -12.81216 -12.52280 -12.34252 -12.17515 -12.14757 -11.82569 -11.80140 -11.73042 -11.04277 -10.90485 -10.79222 -9.76355 -9.59303 -9.04549 -7.96966 -5.28100 1.40583 1.44385 1.52072 1.53028 1.61245 1.87486 2.26099 2.52249 3.35917 3.44444 3.57761 3.67725 3.81600 3.93658 3.96027 4.08746 4.11342 4.25608 4.28150 4.31542 4.39456 4.46344 4.65608 4.69247 4.70340 4.76849 4.78825 4.84500 4.87914 4.90680 4.91633 5.01882 5.14162 5.15104 5.27899 5.31700 5.43351 5.55990 5.65761 6.17194 6.21243 6.43231 7.14214 7.19859 7.27795 8.05727 8.27732 9.25748 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.004597 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.923559 B = 6089.745704 C = 7764.836110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.127 3.873 3 H 0.066 0.934 4 C 0.141 3.859 5 N -0.744 5.744 6 C -0.245 4.245 7 H 0.081 0.919 8 C -0.081 4.081 9 N -0.972 5.972 10 Si 0.977 3.023 11 H -0.287 1.287 12 H -0.299 1.299 13 H -0.261 1.261 14 N -0.597 5.597 15 C 0.078 3.922 16 C 0.511 3.489 17 O -0.588 6.588 18 C -0.136 4.136 19 C 0.147 3.853 20 N -0.618 5.618 21 C 0.092 3.908 22 C -0.115 4.115 23 C -0.147 4.147 24 C 0.489 3.511 25 O -0.596 6.596 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.029 0.971 31 H 0.369 0.631 32 H 0.247 0.753 33 H 0.032 0.968 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 -3.028 21.288 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.023 3.977 3 H 0.084 0.916 4 C 0.014 3.986 5 N -0.387 5.387 6 C -0.377 4.377 7 H 0.099 0.901 8 C -0.273 4.273 9 N -0.622 5.622 10 Si 0.806 3.194 11 H -0.214 1.214 12 H -0.226 1.226 13 H -0.186 1.186 14 N -0.329 5.329 15 C -0.064 4.064 16 C 0.300 3.700 17 O -0.469 6.469 18 C -0.177 4.177 19 C 0.024 3.976 20 N -0.351 5.351 21 C -0.029 4.029 22 C -0.152 4.152 23 C -0.187 4.187 24 C 0.278 3.722 25 O -0.477 6.477 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.201 0.799 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.123 0.877 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.350 -2.560 20.495 25.150 hybrid contribution 1.527 -0.032 -1.158 1.916 sum -12.823 -2.592 19.338 23.347 Atomic orbital electron populations 1.21955 0.90819 1.03740 1.03290 1.21299 0.96342 0.96281 0.83755 0.91585 1.21234 0.83938 0.97856 0.95563 1.42556 1.02184 1.69816 1.24105 1.19675 0.89911 1.28430 0.99645 0.90106 1.25695 0.97684 1.03205 1.00667 1.69906 1.06810 1.52882 1.32646 0.85084 0.77842 0.78217 0.78284 1.21401 1.22613 1.18561 1.47809 1.50006 1.13401 1.21653 1.21927 1.01615 0.79629 1.03261 1.20945 0.77177 0.86537 0.85377 1.90659 1.58730 1.19415 1.78136 1.21895 1.02018 0.99469 0.94312 1.20849 0.97488 0.94196 0.85111 1.48526 1.21782 1.52038 1.12790 1.22550 0.98037 1.00806 0.81506 1.22689 0.92360 0.98788 1.01403 1.22382 1.01567 1.03583 0.91189 1.22148 0.80586 0.78010 0.91421 1.90789 1.48650 1.62433 1.45823 0.91381 0.90242 0.90252 0.94603 0.95289 0.79948 0.94414 0.94888 0.88352 0.88358 0.84379 0.90731 0.94349 0.87767 0.89333 0.87984 0.88762 0.85850 0.87680 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.17 71.98 0.66 -2.54 16 2 C 0.13 4.42 2.80 44.99 0.13 4.54 16 3 H 0.07 2.75 6.90 -2.39 -0.02 2.74 16 4 C 0.14 5.86 5.56 86.38 0.48 6.34 16 5 N -0.74 -41.19 5.43 -343.43 -1.87 -43.06 16 6 C -0.24 -14.58 9.99 84.04 0.84 -13.74 16 7 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 8 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 9 N -0.97 -66.21 13.06 21.65 0.28 -65.92 16 10 Si 0.98 49.43 29.55 68.60 2.03 51.46 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 13 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 14 N -0.60 -19.93 2.24 -822.59 -1.85 -21.78 16 15 C 0.08 1.96 9.40 127.77 1.20 3.16 16 16 C 0.51 19.04 7.38 87.66 0.65 19.69 16 17 O -0.59 -26.97 15.31 -3.03 -0.05 -27.02 16 18 C -0.14 -3.98 4.58 29.85 0.14 -3.85 16 19 C 0.15 4.46 5.22 86.38 0.45 4.91 16 20 N -0.62 -14.89 2.93 -817.61 -2.40 -17.29 16 21 C 0.09 1.02 7.36 86.90 0.64 1.65 16 22 C -0.11 -0.83 7.19 31.72 0.23 -0.61 16 23 C -0.15 -2.34 6.86 30.59 0.21 -2.13 16 24 C 0.49 14.61 8.02 87.90 0.71 15.32 16 25 O -0.60 -26.63 17.59 -3.05 -0.05 -26.69 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.49 6.66 -2.39 -0.02 1.47 16 28 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.37 22.82 7.06 -92.71 -0.65 22.16 16 32 H 0.25 16.50 8.31 -92.71 -0.77 15.73 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.76 6.44 -2.38 -0.02 1.75 16 35 H 0.10 1.90 6.43 -2.39 -0.02 1.88 16 36 H 0.14 2.56 7.40 -2.39 -0.02 2.54 16 37 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 38 H 0.04 1.59 7.88 -2.39 -0.02 1.57 16 39 H 0.10 2.69 8.10 -2.39 -0.02 2.67 16 40 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -93.60 366.84 3.21 -90.39 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.32 Total: 31.68 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 6.79 Total: 28.22 kcal Atomic # 7 Polarization: -142.22 SS G_CDS: -5.83 Total: -148.05 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -0.10 Total: -53.70 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Total: -93.60 3.21 -90.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753726968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -93.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds