Wall clock time and date at job start Tue Mar 31 2020 03:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00140 * 2 1 4 4 N 1.34777 * 119.99913 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00070 * 174.83134 * 4 2 1 6 6 C 1.46494 * 120.00090 * 354.82596 * 4 2 1 7 7 C 1.50700 * 109.47336 * 90.00253 * 6 4 2 8 8 O 1.21285 * 119.99731 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00427 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99950 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.02102 * 326.39152 * 10 9 7 12 12 C 1.53871 * 110.03152 * 87.83514 * 10 9 7 13 13 C 1.54262 * 106.59849 * 119.28359 * 12 10 9 14 14 C 1.54882 * 104.19808 * 23.60997 * 13 12 10 15 15 C 1.54267 * 110.03119 * 205.00160 * 10 9 7 16 16 H 1.09003 * 110.48512 * 335.91553 * 15 10 9 17 17 C 1.52994 * 110.48903 * 98.42933 * 15 10 9 18 18 N 1.46498 * 109.47306 * 184.99883 * 17 15 10 19 19 C 1.36942 * 119.99957 * 179.71960 * 18 17 15 20 20 H 1.07993 * 119.99943 * 0.28279 * 19 18 17 21 21 C 1.38814 * 119.99858 * 180.27191 * 19 18 17 22 22 N 1.31622 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99663 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47106 * 90.00636 * 23 21 19 25 25 H 1.48510 * 109.46982 * 210.00300 * 23 21 19 26 26 H 1.48492 * 109.47294 * 330.00192 * 23 21 19 27 27 H 1.08994 * 109.46819 * 274.82255 * 1 2 3 28 28 H 1.09004 * 109.46603 * 34.82364 * 1 2 3 29 29 H 1.08999 * 109.47223 * 154.81791 * 1 2 3 30 30 H 1.08994 * 109.47146 * 275.05011 * 5 4 2 31 31 H 1.09002 * 109.47215 * 35.05049 * 5 4 2 32 32 H 1.09005 * 109.47219 * 155.05093 * 5 4 2 33 33 H 1.08998 * 109.47348 * 330.00404 * 6 4 2 34 34 H 1.09001 * 109.47774 * 210.00547 * 6 4 2 35 35 H 0.96994 * 120.00033 * 0.02562 * 9 7 6 36 36 H 1.09003 * 110.03319 * 238.57031 * 12 10 9 37 37 H 1.09005 * 110.03291 * 359.94719 * 12 10 9 38 38 H 1.09004 * 110.48630 * 142.29098 * 13 12 10 39 39 H 1.09004 * 110.48876 * 264.79426 * 13 12 10 40 40 H 1.08997 * 110.76000 * 203.74329 * 14 13 12 41 41 H 1.09008 * 110.75832 * 80.37199 * 14 13 12 42 42 H 1.08998 * 109.47322 * 64.99757 * 17 15 10 43 43 H 1.09004 * 109.46701 * 304.99753 * 17 15 10 44 44 H 0.96998 * 119.99851 * 0.02562 * 18 17 15 45 45 H 0.96998 * 119.99543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6414 -1.1698 -0.1148 6 6 1.4529 -2.4334 0.1133 7 6 1.0923 -2.9310 -1.2627 8 8 1.4124 -2.2912 -2.2421 9 7 0.4142 -4.0870 -1.4050 10 6 0.0632 -4.5704 -2.7427 11 1 -0.1384 -3.7272 -3.4033 12 6 1.2093 -5.4249 -3.3119 13 6 0.6285 -6.8322 -3.5602 14 6 -0.8940 -6.5931 -3.7140 15 6 -1.1742 -5.4884 -2.6650 16 1 -1.2667 -5.9204 -1.6685 17 6 -2.4408 -4.7119 -3.0304 18 7 -3.6126 -5.5691 -2.8347 19 6 -4.8667 -5.0840 -3.0941 20 1 -4.9915 -4.0712 -3.4474 21 6 -5.9775 -5.8944 -2.9033 22 7 -5.8253 -7.1288 -2.4725 23 14 -7.6880 -5.2330 -3.2579 24 1 -8.0409 -5.5070 -4.6741 25 1 -8.6709 -5.8984 -2.3653 26 1 -7.7123 -3.7681 -3.0162 27 1 -0.3633 0.0864 1.0240 28 1 -0.3633 0.8437 -0.5869 29 1 -0.3633 -0.9300 -0.4373 30 1 3.9236 -1.1257 -1.1667 31 1 4.0483 -0.3036 0.4071 32 1 4.0391 -2.0820 0.3301 33 1 0.5432 -2.2786 0.6936 34 1 2.0815 -3.1704 0.6131 35 1 0.1578 -4.5985 -0.6218 36 1 1.5643 -4.9966 -4.2493 37 1 2.0271 -5.4791 -2.5932 38 1 1.0417 -7.2597 -4.4738 39 1 0.8304 -7.4838 -2.7100 40 1 -1.4530 -7.4990 -3.4796 41 1 -1.1303 -6.2410 -4.7182 42 1 -2.3882 -4.4011 -4.0738 43 1 -2.5239 -3.8317 -2.3928 44 1 -3.5005 -6.4787 -2.5171 45 1 -6.6015 -7.6949 -2.3388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:28 Heat of formation + Delta-G solvation = -66.988060 kcal Electronic energy + Delta-G solvation = -24540.819249 eV Core-core repulsion = 20979.283689 eV Total energy + Delta-G solvation = -3561.535560 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58551 -39.50234 -38.00741 -35.55222 -34.53127 -33.63819 -31.44526 -30.74096 -29.25247 -28.60632 -27.14826 -25.87618 -24.46762 -22.24185 -21.45964 -20.23719 -19.93087 -19.30249 -17.60279 -17.34463 -17.00125 -16.63757 -16.13166 -15.44113 -15.20320 -14.77716 -14.43239 -14.27177 -13.74148 -13.58355 -13.50564 -13.24102 -13.21807 -12.91453 -12.85556 -12.71010 -12.20348 -12.18721 -12.11585 -11.73246 -11.39878 -11.00132 -10.89149 -10.79844 -10.54365 -10.43982 -10.37000 -10.23261 -10.07146 -10.01941 -9.74241 -9.07319 -8.93429 -8.89655 -6.95247 -5.80042 -3.08383 2.32492 2.44524 2.65076 3.19311 3.41613 3.47283 3.48406 4.32000 4.46923 4.55717 4.57560 4.74420 4.78636 4.82064 4.97431 4.98422 5.12500 5.20723 5.35988 5.40382 5.51285 5.57933 5.60359 5.61401 5.70008 5.72711 5.76268 5.86067 5.99882 6.07531 6.12817 6.16429 6.23801 6.47616 6.49703 6.51943 6.72131 6.85338 6.99924 7.40105 7.67713 7.91731 8.10044 8.39147 9.50621 10.07818 10.42791 11.42812 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.003491 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.626185 B = 8018.276973 C = 9486.594373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.522 3.478 3 O -0.545 6.545 4 N -0.602 5.602 5 C 0.087 3.913 6 C 0.089 3.911 7 C 0.487 3.513 8 O -0.528 6.528 9 N -0.717 5.717 10 C 0.146 3.854 11 H 0.093 0.907 12 C -0.130 4.130 13 C -0.125 4.125 14 C -0.111 4.111 15 C -0.101 4.101 16 H 0.080 0.920 17 C 0.161 3.839 18 N -0.730 5.730 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.829 3.858 6.679 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.312 3.688 3 O -0.422 6.422 4 N -0.335 5.335 5 C -0.055 4.055 6 C -0.039 4.039 7 C 0.271 3.729 8 O -0.404 6.404 9 N -0.369 5.369 10 C 0.041 3.959 11 H 0.111 0.889 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.149 4.149 15 C -0.121 4.121 16 H 0.098 0.902 17 C 0.034 3.966 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.264 5.034 5.922 19.849 hybrid contribution -1.157 -0.478 0.219 1.271 sum 17.107 4.556 6.142 18.738 Atomic orbital electron populations 1.21964 0.91498 1.05350 1.04777 1.20791 0.90708 0.82743 0.74559 1.90700 1.70865 1.30876 1.49718 1.47434 1.07479 1.05130 1.73458 1.21659 0.78851 1.02667 1.02334 1.21566 0.99825 0.87411 0.95074 1.21226 0.78454 0.81151 0.92059 1.90745 1.52893 1.56430 1.40304 1.46212 1.57285 1.23642 1.09780 1.21724 0.93758 0.97166 0.83231 0.88927 1.22526 0.97571 0.95687 1.01089 1.22384 0.96467 0.96148 1.01272 1.22455 0.94420 0.98785 0.99214 1.22432 0.93825 0.95662 1.00148 0.90197 1.20676 0.85606 0.92931 0.97425 1.42320 1.00967 1.13608 1.80570 1.19229 0.83731 0.97145 1.36922 0.91262 1.24723 0.97857 0.96124 1.02230 1.69655 1.29156 1.06964 1.52488 0.86200 0.84508 0.77930 0.77629 1.21715 1.21774 1.20763 0.88612 0.88513 0.90222 0.92321 0.90583 0.91241 0.86917 0.87068 0.76449 0.91437 0.91840 0.91858 0.91837 0.90687 0.91057 0.96184 0.96539 0.78277 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.35 36.01 0.34 -1.35 16 2 C 0.52 6.49 7.77 -10.99 -0.09 6.41 16 3 O -0.54 -8.80 16.73 5.56 0.09 -8.71 16 4 N -0.60 -6.12 2.36 -182.95 -0.43 -6.55 16 5 C 0.09 0.79 10.46 59.85 0.63 1.42 16 6 C 0.09 0.64 5.51 -5.20 -0.03 0.61 16 7 C 0.49 5.25 7.16 -10.99 -0.08 5.17 16 8 O -0.53 -8.08 16.09 5.55 0.09 -7.99 16 9 N -0.72 -7.10 4.98 -52.72 -0.26 -7.37 16 10 C 0.15 1.81 2.82 -66.81 -0.19 1.62 16 11 H 0.09 1.37 7.26 -51.93 -0.38 0.99 16 12 C -0.13 -1.45 6.59 -25.62 -0.17 -1.62 16 13 C -0.12 -1.37 6.83 -25.08 -0.17 -1.55 16 14 C -0.11 -1.54 6.19 -24.74 -0.15 -1.69 16 15 C -0.10 -1.45 2.59 -88.96 -0.23 -1.68 16 16 H 0.08 1.11 7.74 -51.93 -0.40 0.71 16 17 C 0.16 3.08 5.54 -4.05 -0.02 3.05 16 18 N -0.73 -17.67 5.49 -59.91 -0.33 -17.99 16 19 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.74 6.01 -51.93 -0.31 0.43 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.73 7.51 -51.93 -0.39 0.34 16 32 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 33 H 0.11 0.58 6.70 -51.93 -0.35 0.23 16 34 H 0.11 0.46 7.86 -51.93 -0.41 0.05 16 35 H 0.40 2.95 8.36 -40.82 -0.34 2.61 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.06 7.97 -51.92 -0.41 0.65 16 42 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 9.66 7.64 -40.82 -0.31 9.34 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -35.38 367.97 -7.47 -42.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.47 Total: 6.72 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.41 Total: 3.22 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.30 Total: -58.71 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.18 Total: -16.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.38 -7.47 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.134 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds