Wall clock time and date at job start Tue Mar 31 2020 03:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00140 * 2 1 4 4 N 1.34777 * 119.99913 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00070 * 174.83134 * 4 2 1 6 6 C 1.46494 * 120.00090 * 354.82596 * 4 2 1 7 7 C 1.50700 * 109.47336 * 90.00253 * 6 4 2 8 8 O 1.21285 * 119.99731 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00427 * 180.02562 * 7 6 4 10 10 C 1.46504 * 119.99950 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.02102 * 326.39152 * 10 9 7 12 12 C 1.53871 * 110.03152 * 87.83514 * 10 9 7 13 13 C 1.54262 * 106.59849 * 119.28359 * 12 10 9 14 14 C 1.54882 * 104.19808 * 23.60997 * 13 12 10 15 15 C 1.54267 * 110.03119 * 205.00160 * 10 9 7 16 16 H 1.09003 * 110.48512 * 335.91553 * 15 10 9 17 17 C 1.52994 * 110.48903 * 98.42933 * 15 10 9 18 18 N 1.46498 * 109.47306 * 184.99883 * 17 15 10 19 19 C 1.36942 * 119.99957 * 179.71960 * 18 17 15 20 20 H 1.07993 * 119.99943 * 0.28279 * 19 18 17 21 21 C 1.38814 * 119.99858 * 180.27191 * 19 18 17 22 22 N 1.31622 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99663 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47106 * 90.00636 * 23 21 19 25 25 H 1.48510 * 109.46982 * 210.00300 * 23 21 19 26 26 H 1.48492 * 109.47294 * 330.00192 * 23 21 19 27 27 H 1.08994 * 109.46819 * 274.82255 * 1 2 3 28 28 H 1.09004 * 109.46603 * 34.82364 * 1 2 3 29 29 H 1.08999 * 109.47223 * 154.81791 * 1 2 3 30 30 H 1.08994 * 109.47146 * 275.05011 * 5 4 2 31 31 H 1.09002 * 109.47215 * 35.05049 * 5 4 2 32 32 H 1.09005 * 109.47219 * 155.05093 * 5 4 2 33 33 H 1.08998 * 109.47348 * 330.00404 * 6 4 2 34 34 H 1.09001 * 109.47774 * 210.00547 * 6 4 2 35 35 H 0.96994 * 120.00033 * 0.02562 * 9 7 6 36 36 H 1.09003 * 110.03319 * 238.57031 * 12 10 9 37 37 H 1.09005 * 110.03291 * 359.94719 * 12 10 9 38 38 H 1.09004 * 110.48630 * 142.29098 * 13 12 10 39 39 H 1.09004 * 110.48876 * 264.79426 * 13 12 10 40 40 H 1.08997 * 110.76000 * 203.74329 * 14 13 12 41 41 H 1.09008 * 110.75832 * 80.37199 * 14 13 12 42 42 H 1.08998 * 109.47322 * 64.99757 * 17 15 10 43 43 H 1.09004 * 109.46701 * 304.99753 * 17 15 10 44 44 H 0.96998 * 119.99851 * 0.02562 * 18 17 15 45 45 H 0.96998 * 119.99543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6414 -1.1698 -0.1148 6 6 1.4529 -2.4334 0.1133 7 6 1.0923 -2.9310 -1.2627 8 8 1.4124 -2.2912 -2.2421 9 7 0.4142 -4.0870 -1.4050 10 6 0.0632 -4.5704 -2.7427 11 1 -0.1384 -3.7272 -3.4033 12 6 1.2093 -5.4249 -3.3119 13 6 0.6285 -6.8322 -3.5602 14 6 -0.8940 -6.5931 -3.7140 15 6 -1.1742 -5.4884 -2.6650 16 1 -1.2667 -5.9204 -1.6685 17 6 -2.4408 -4.7119 -3.0304 18 7 -3.6126 -5.5691 -2.8347 19 6 -4.8667 -5.0840 -3.0941 20 1 -4.9915 -4.0712 -3.4474 21 6 -5.9775 -5.8944 -2.9033 22 7 -5.8253 -7.1288 -2.4725 23 14 -7.6880 -5.2330 -3.2579 24 1 -8.0409 -5.5070 -4.6741 25 1 -8.6709 -5.8984 -2.3653 26 1 -7.7123 -3.7681 -3.0162 27 1 -0.3633 0.0864 1.0240 28 1 -0.3633 0.8437 -0.5869 29 1 -0.3633 -0.9300 -0.4373 30 1 3.9236 -1.1257 -1.1667 31 1 4.0483 -0.3036 0.4071 32 1 4.0391 -2.0820 0.3301 33 1 0.5432 -2.2786 0.6936 34 1 2.0815 -3.1704 0.6131 35 1 0.1578 -4.5985 -0.6218 36 1 1.5643 -4.9966 -4.2493 37 1 2.0271 -5.4791 -2.5932 38 1 1.0417 -7.2597 -4.4738 39 1 0.8304 -7.4838 -2.7100 40 1 -1.4530 -7.4990 -3.4796 41 1 -1.1303 -6.2410 -4.7182 42 1 -2.3882 -4.4011 -4.0738 43 1 -2.5239 -3.8317 -2.3928 44 1 -3.5005 -6.4787 -2.5171 45 1 -6.6015 -7.6949 -2.3388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753881221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:27 Heat of formation + Delta-G solvation = -92.471868 kcal Electronic energy + Delta-G solvation = -24541.924310 eV Core-core repulsion = 20979.283689 eV Total energy + Delta-G solvation = -3562.640621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47425 -40.48299 -39.09409 -36.50700 -36.22678 -34.66743 -33.27912 -31.51263 -30.28146 -29.94861 -28.05185 -26.69700 -26.17730 -23.90725 -22.37317 -21.37158 -20.91155 -20.21910 -19.19880 -18.20367 -18.19932 -17.60956 -17.07925 -16.54413 -16.37821 -16.16664 -15.69791 -15.28969 -15.14160 -15.03805 -14.61406 -14.39505 -14.37643 -14.03612 -13.60220 -13.49200 -13.36661 -13.13343 -13.02437 -12.92675 -12.80469 -12.61321 -12.42082 -12.16224 -11.94152 -11.84665 -11.60614 -11.56532 -11.41354 -11.19668 -11.03650 -10.91697 -10.01473 -9.77851 -8.97984 -7.94650 -5.22416 1.42018 1.48379 1.49264 1.57601 1.62535 1.89532 2.37301 2.56604 3.38711 3.48268 3.57860 3.70008 3.83106 3.95013 4.07114 4.19226 4.24173 4.37054 4.43328 4.45885 4.52209 4.52526 4.58511 4.61521 4.63988 4.69292 4.77399 4.89396 4.96868 5.00754 5.04465 5.14320 5.22432 5.27104 5.35390 5.35924 5.48342 5.52993 5.66321 6.18127 6.28265 6.61852 7.03155 7.30239 7.35523 8.10656 8.35776 9.28409 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015209 B = 0.003491 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.626185 B = 8018.276973 C = 9486.594373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.594 6.594 4 N -0.601 5.601 5 C 0.084 3.916 6 C 0.090 3.910 7 C 0.488 3.512 8 O -0.578 6.578 9 N -0.706 5.706 10 C 0.155 3.845 11 H 0.065 0.935 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.113 4.113 15 C -0.089 4.089 16 H 0.091 0.909 17 C 0.162 3.838 18 N -0.738 5.738 19 C -0.247 4.247 20 H 0.069 0.931 21 C -0.070 4.070 22 N -0.965 5.965 23 Si 0.968 3.032 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.272 1.272 27 H 0.124 0.876 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.417 0.583 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.008 0.992 43 H 0.015 0.985 44 H 0.377 0.623 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.497 3.056 8.144 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.475 6.475 4 N -0.332 5.332 5 C -0.058 4.058 6 C -0.036 4.036 7 C 0.274 3.726 8 O -0.458 6.458 9 N -0.359 5.359 10 C 0.049 3.951 11 H 0.083 0.917 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.108 4.108 16 H 0.109 0.891 17 C 0.035 3.965 18 N -0.381 5.381 19 C -0.379 4.379 20 H 0.087 0.913 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.798 3.202 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.197 1.197 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.255 0.745 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.033 0.967 44 H 0.210 0.790 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.945 4.204 7.407 20.771 hybrid contribution -1.343 -0.226 -0.282 1.390 sum 17.602 3.979 7.126 19.402 Atomic orbital electron populations 1.21971 0.89584 1.05101 1.06443 1.21343 0.91848 0.82766 0.73836 1.90671 1.71929 1.32708 1.52193 1.47571 1.08063 1.05614 1.71959 1.21744 0.78546 1.04210 1.01281 1.21893 1.01765 0.86860 0.93065 1.21855 0.77385 0.80478 0.92925 1.90743 1.54920 1.57791 1.42300 1.46068 1.56780 1.23698 1.09366 1.21415 0.93431 0.95975 0.84319 0.91677 1.22452 0.97271 0.95239 1.01122 1.22313 0.93662 0.96354 1.02617 1.22415 0.96804 0.97843 0.98093 1.22265 0.92235 0.95591 1.00701 0.89087 1.20781 0.86238 0.92877 0.96599 1.42464 1.01507 1.13849 1.80321 1.19575 0.85239 0.97136 1.35919 0.91293 1.25469 1.01336 0.96523 1.02903 1.69789 1.29786 1.08016 1.53940 0.85219 0.80155 0.77756 0.77110 1.21661 1.21925 1.19686 0.85786 0.89454 0.89825 0.94327 0.91602 0.87393 0.84122 0.82691 0.74508 0.92124 0.90205 0.90813 0.90063 0.92080 0.92709 0.97371 0.96723 0.79041 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.35 71.24 0.67 -2.39 16 2 C 0.51 12.38 7.77 87.66 0.68 13.06 16 3 O -0.59 -19.62 16.73 -3.04 -0.05 -19.67 16 4 N -0.60 -11.09 2.36 -851.13 -2.01 -13.10 16 5 C 0.08 1.41 10.46 127.77 1.34 2.75 16 6 C 0.09 0.98 5.51 85.63 0.47 1.45 16 7 C 0.49 9.37 7.16 87.66 0.63 10.00 16 8 O -0.58 -17.30 16.09 -3.04 -0.05 -17.34 16 9 N -0.71 -12.10 4.98 -439.10 -2.19 -14.28 16 10 C 0.15 3.62 2.82 45.71 0.13 3.75 16 11 H 0.06 1.93 7.26 -2.39 -0.02 1.91 16 12 C -0.12 -2.46 6.59 31.32 0.21 -2.25 16 13 C -0.11 -2.19 6.83 31.67 0.22 -1.97 16 14 C -0.11 -3.07 6.19 31.88 0.20 -2.88 16 15 C -0.09 -2.44 2.59 -9.72 -0.03 -2.46 16 16 H 0.09 2.34 7.74 -2.39 -0.02 2.32 16 17 C 0.16 6.17 5.54 86.38 0.48 6.65 16 18 N -0.74 -35.87 5.49 -343.46 -1.89 -37.76 16 19 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 20 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 21 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 22 N -0.96 -57.13 13.06 21.65 0.28 -56.84 16 23 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.40 6.01 -2.39 -0.01 1.39 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.24 7.51 -2.39 -0.02 1.22 16 32 H 0.11 0.92 7.84 -2.38 -0.02 0.91 16 33 H 0.14 0.82 6.70 -2.39 -0.02 0.80 16 34 H 0.16 0.41 7.86 -2.39 -0.02 0.39 16 35 H 0.42 4.55 8.36 -92.71 -0.77 3.78 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.38 7.92 -2.38 -0.02 1.36 16 38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.65 7.97 -2.38 -0.02 1.63 16 42 H 0.01 0.34 8.02 -2.39 -0.02 0.32 16 43 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 44 H 0.38 19.12 7.64 -92.71 -0.71 18.41 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -79.11 367.97 1.93 -77.18 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.49 Total: 24.90 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.29 Total: 9.55 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.80 Total: -121.99 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.10 Total: -37.02 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.11 1.93 -77.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.294 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds