Wall clock time and date at job start Tue Mar 31 2020 03:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21282 * 120.00220 * 2 1 4 4 N 1.34775 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99659 * 359.97438 * 4 2 1 6 6 C 1.46501 * 120.00329 * 180.02562 * 4 2 1 7 7 C 1.50694 * 109.47371 * 89.99920 * 6 4 2 8 8 O 1.21279 * 120.00135 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99853 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99565 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.81794 * 31.65839 * 10 9 7 12 12 C 1.54895 * 110.75342 * 268.32017 * 10 9 7 13 13 C 1.54259 * 104.19373 * 203.74566 * 12 10 9 14 14 C 1.53871 * 106.60160 * 23.61345 * 13 12 10 15 15 C 1.54260 * 106.59937 * 359.97438 * 14 13 12 16 16 H 1.09008 * 110.48690 * 95.20309 * 15 14 13 17 17 C 1.53001 * 110.48860 * 217.71147 * 15 14 13 18 18 N 1.46490 * 109.47264 * 293.54505 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46685 * 269.99637 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99716 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00435 * 23 21 19 27 27 H 1.09000 * 109.47519 * 240.00126 * 1 2 3 28 28 H 1.09005 * 109.46932 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47314 * 120.00104 * 1 2 3 30 30 H 1.08997 * 109.47473 * 269.99971 * 5 4 2 31 31 H 1.08992 * 109.47367 * 30.00507 * 5 4 2 32 32 H 1.09005 * 109.46888 * 149.99808 * 5 4 2 33 33 H 1.09005 * 109.46971 * 329.99676 * 6 4 2 34 34 H 1.08997 * 109.47036 * 209.99990 * 6 4 2 35 35 H 0.96999 * 120.00166 * 359.97438 * 9 7 6 36 36 H 1.09004 * 110.48155 * 85.06826 * 12 10 9 37 37 H 1.09001 * 110.59996 * 322.48082 * 12 10 9 38 38 H 1.09005 * 110.03341 * 264.32198 * 13 12 10 39 39 H 1.09004 * 110.07194 * 142.92286 * 13 12 10 40 40 H 1.09000 * 110.03289 * 240.71026 * 14 13 12 41 41 H 1.08996 * 110.03704 * 119.28700 * 14 13 12 42 42 H 1.09003 * 109.46836 * 173.54212 * 17 15 14 43 43 H 1.08999 * 109.47071 * 53.55252 * 17 15 14 44 44 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 45 45 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4483 -2.4359 -0.0005 6 6 3.6458 -1.1672 0.0000 7 6 4.1476 -1.1682 1.4210 8 8 3.3592 -1.1683 2.3425 9 7 5.4727 -1.1679 1.6677 10 6 5.9605 -1.1693 3.0491 11 1 5.2720 -1.7052 3.7025 12 6 6.1826 0.2779 3.5543 13 6 7.2175 0.1281 4.6884 14 6 7.9796 -1.1810 4.4179 15 6 7.3809 -1.7813 3.1292 16 1 7.9730 -1.4897 2.2616 17 6 7.3027 -3.3056 3.2346 18 7 8.6570 -3.8622 3.2786 19 6 8.8381 -5.2162 3.3738 20 1 7.9825 -5.8738 3.4159 21 6 10.1215 -5.7436 3.4161 22 7 11.1643 -4.9421 3.3652 23 14 10.3684 -7.5907 3.5451 24 1 10.4277 -7.9833 4.9761 25 1 9.2352 -8.2889 2.8868 26 1 11.6389 -7.9683 2.8753 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 1.2669 -2.7508 1.0271 31 1 0.4957 -2.3055 -0.5140 32 1 2.0371 -3.1954 -0.5148 33 1 4.0094 -0.2769 -0.5131 34 1 4.0093 -2.0568 -0.5142 35 1 6.1033 -1.1674 0.9306 36 1 5.2519 0.6945 3.9397 37 1 6.5791 0.9060 2.7566 38 1 6.7104 0.0727 5.6517 39 1 7.9082 0.9713 4.6784 40 1 7.8425 -1.8716 5.2499 41 1 9.0401 -0.9731 4.2757 42 1 6.7745 -3.7031 2.3678 43 1 6.7673 -3.5800 4.1435 44 1 9.4256 -3.2716 3.2412 45 1 11.0360 -3.9830 3.2978 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:30 Heat of formation + Delta-G solvation = -69.739811 kcal Electronic energy + Delta-G solvation = -24457.004604 eV Core-core repulsion = 20895.349719 eV Total energy + Delta-G solvation = -3561.654885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50959 -39.44277 -37.93449 -35.64047 -34.73164 -33.67077 -31.45449 -31.04625 -28.75842 -28.34461 -27.34835 -25.99729 -24.13566 -22.43432 -21.25943 -20.46639 -19.77500 -19.27701 -17.54633 -17.30533 -17.14807 -16.77943 -16.04226 -15.51627 -15.25183 -14.90471 -14.23201 -14.09257 -13.71099 -13.63841 -13.47858 -13.37100 -13.25309 -13.12819 -13.00412 -12.73525 -12.45937 -12.28215 -12.15608 -11.86893 -11.13212 -11.00433 -10.77210 -10.67996 -10.53333 -10.42368 -10.20241 -10.13573 -10.10658 -10.01918 -9.21827 -8.97483 -8.90229 -8.88144 -7.00301 -6.11168 -3.10415 2.29853 2.59169 2.62678 3.29378 3.50788 3.55670 3.69594 4.30758 4.53172 4.65759 4.70335 4.77647 4.81382 4.84980 4.97738 4.99575 5.00901 5.10193 5.21675 5.39863 5.42104 5.53357 5.54407 5.59185 5.62493 5.69020 5.76643 5.87948 5.98265 6.01459 6.06841 6.21060 6.25291 6.40991 6.51103 6.54450 6.68982 6.83427 7.02333 7.48319 7.80828 7.88220 8.20473 8.75560 9.23026 10.09366 10.24723 11.37660 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003211 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.222625 B = 8718.856587 C = 9881.782962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.517 3.483 3 O -0.545 6.545 4 N -0.601 5.601 5 C 0.078 3.922 6 C 0.094 3.906 7 C 0.499 3.501 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.148 3.852 11 H 0.097 0.903 12 C -0.132 4.132 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.104 4.104 16 H 0.077 0.923 17 C 0.168 3.832 18 N -0.742 5.742 19 C -0.330 4.330 20 H 0.063 0.937 21 C -0.046 4.046 22 N -0.945 5.945 23 Si 1.083 2.917 24 H -0.295 1.295 25 H -0.295 1.295 26 H -0.288 1.288 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.401 0.599 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.367 0.633 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.971 9.358 -7.838 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.306 3.694 3 O -0.422 6.422 4 N -0.335 5.335 5 C -0.065 4.065 6 C -0.033 4.033 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.368 5.368 10 C 0.043 3.957 11 H 0.115 0.885 12 C -0.171 4.171 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.123 4.123 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.388 5.388 19 C -0.462 4.462 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.591 5.591 23 Si 0.914 3.086 24 H -0.223 1.223 25 H -0.222 1.222 26 H -0.214 1.214 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.200 0.800 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.311 8.533 -7.084 21.408 hybrid contribution -0.587 1.205 -0.365 1.389 sum -18.898 9.738 -7.449 22.527 Atomic orbital electron populations 1.21920 0.91435 1.05436 1.04197 1.20817 0.90796 0.82829 0.74939 1.90716 1.70795 1.31110 1.49564 1.47430 1.05238 1.07080 1.73706 1.21891 0.97038 0.84783 1.02749 1.21336 0.81569 1.05718 0.94686 1.21109 0.82621 0.75977 0.91959 1.90680 1.55289 1.49078 1.46103 1.45960 1.06746 1.75007 1.09090 1.22002 0.95469 0.95938 0.82299 0.88517 1.22696 0.99213 0.96708 0.98443 1.22095 0.97520 0.98103 0.98280 1.22067 0.99557 0.95910 0.97513 1.22431 0.94136 0.96901 0.98847 0.90483 1.20594 0.88545 0.88970 0.97822 1.42345 1.01298 1.04834 1.90314 1.20060 0.94687 0.83500 1.47903 0.91857 1.25770 0.91093 1.06917 1.00566 1.70854 1.30502 1.04145 1.53596 0.83197 0.75205 0.73995 0.76248 1.22315 1.22191 1.21381 0.89151 0.89048 0.89360 0.91833 0.90587 0.90772 0.86909 0.87253 0.76471 0.91603 0.91496 0.91865 0.91857 0.90978 0.91490 0.96472 0.96222 0.80004 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 8.87 36.00 0.32 -0.86 16 2 C 0.52 5.94 7.78 -10.99 -0.09 5.85 16 3 O -0.54 -8.55 16.66 5.56 0.09 -8.46 16 4 N -0.60 -6.01 2.36 -182.96 -0.43 -6.44 16 5 C 0.08 0.52 10.29 59.85 0.62 1.13 16 6 C 0.09 0.94 5.93 -5.20 -0.03 0.91 16 7 C 0.50 6.71 7.90 -10.99 -0.09 6.63 16 8 O -0.54 -9.22 16.08 5.56 0.09 -9.13 16 9 N -0.72 -8.95 5.18 -51.89 -0.27 -9.22 16 10 C 0.15 2.11 2.69 -65.94 -0.18 1.94 16 11 H 0.10 1.58 7.47 -51.93 -0.39 1.20 16 12 C -0.13 -1.73 6.51 -25.07 -0.16 -1.90 16 13 C -0.12 -1.57 6.80 -25.62 -0.17 -1.74 16 14 C -0.11 -1.72 6.05 -25.62 -0.15 -1.88 16 15 C -0.10 -1.63 2.55 -88.97 -0.23 -1.86 16 16 H 0.08 1.19 8.02 -51.92 -0.42 0.77 16 17 C 0.17 3.41 5.57 -4.05 -0.02 3.38 16 18 N -0.74 -18.61 5.44 -59.91 -0.33 -18.94 16 19 C -0.33 -9.39 9.99 -15.06 -0.15 -9.54 16 20 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 22 N -0.95 -29.22 13.70 55.49 0.76 -28.46 16 23 Si 1.08 26.03 29.92 -169.99 -5.09 20.95 16 24 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.09 0.64 8.12 -51.93 -0.42 0.21 16 29 H 0.09 0.37 7.40 -51.93 -0.38 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.30 6.44 -51.93 -0.33 -0.03 16 32 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 33 H 0.11 1.11 7.42 -51.93 -0.39 0.72 16 34 H 0.11 0.76 7.89 -51.93 -0.41 0.35 16 35 H 0.40 4.07 8.57 -40.82 -0.35 3.72 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.22 7.77 -51.93 -0.40 0.82 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.42 8.05 -51.93 -0.42 0.01 16 44 H 0.37 9.33 6.35 -40.82 -0.26 9.07 16 45 H 0.25 7.72 6.77 -40.82 -0.28 7.45 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -37.43 368.20 -7.50 -44.93 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.44 Total: 8.60 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.43 Total: 0.62 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.27 Total: -63.06 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.58 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.43 -7.50 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.811 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds