Wall clock time and date at job start Tue Mar 31 2020 03:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21282 * 120.00220 * 2 1 4 4 N 1.34775 * 120.00132 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99659 * 359.97438 * 4 2 1 6 6 C 1.46501 * 120.00329 * 180.02562 * 4 2 1 7 7 C 1.50694 * 109.47371 * 89.99920 * 6 4 2 8 8 O 1.21279 * 120.00135 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99853 * 180.02562 * 7 6 4 10 10 C 1.46502 * 119.99565 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.81794 * 31.65839 * 10 9 7 12 12 C 1.54895 * 110.75342 * 268.32017 * 10 9 7 13 13 C 1.54259 * 104.19373 * 203.74566 * 12 10 9 14 14 C 1.53871 * 106.60160 * 23.61345 * 13 12 10 15 15 C 1.54260 * 106.59937 * 359.97438 * 14 13 12 16 16 H 1.09008 * 110.48690 * 95.20309 * 15 14 13 17 17 C 1.53001 * 110.48860 * 217.71147 * 15 14 13 18 18 N 1.46490 * 109.47264 * 293.54505 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46685 * 269.99637 * 23 21 19 25 25 H 1.48494 * 109.47357 * 29.99716 * 23 21 19 26 26 H 1.48502 * 109.47120 * 150.00435 * 23 21 19 27 27 H 1.09000 * 109.47519 * 240.00126 * 1 2 3 28 28 H 1.09005 * 109.46932 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47314 * 120.00104 * 1 2 3 30 30 H 1.08997 * 109.47473 * 269.99971 * 5 4 2 31 31 H 1.08992 * 109.47367 * 30.00507 * 5 4 2 32 32 H 1.09005 * 109.46888 * 149.99808 * 5 4 2 33 33 H 1.09005 * 109.46971 * 329.99676 * 6 4 2 34 34 H 1.08997 * 109.47036 * 209.99990 * 6 4 2 35 35 H 0.96999 * 120.00166 * 359.97438 * 9 7 6 36 36 H 1.09004 * 110.48155 * 85.06826 * 12 10 9 37 37 H 1.09001 * 110.59996 * 322.48082 * 12 10 9 38 38 H 1.09005 * 110.03341 * 264.32198 * 13 12 10 39 39 H 1.09004 * 110.07194 * 142.92286 * 13 12 10 40 40 H 1.09000 * 110.03289 * 240.71026 * 14 13 12 41 41 H 1.08996 * 110.03704 * 119.28700 * 14 13 12 42 42 H 1.09003 * 109.46836 * 173.54212 * 17 15 14 43 43 H 1.08999 * 109.47071 * 53.55252 * 17 15 14 44 44 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 45 45 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4483 -2.4359 -0.0005 6 6 3.6458 -1.1672 0.0000 7 6 4.1476 -1.1682 1.4210 8 8 3.3592 -1.1683 2.3425 9 7 5.4727 -1.1679 1.6677 10 6 5.9605 -1.1693 3.0491 11 1 5.2720 -1.7052 3.7025 12 6 6.1826 0.2779 3.5543 13 6 7.2175 0.1281 4.6884 14 6 7.9796 -1.1810 4.4179 15 6 7.3809 -1.7813 3.1292 16 1 7.9730 -1.4897 2.2616 17 6 7.3027 -3.3056 3.2346 18 7 8.6570 -3.8622 3.2786 19 6 8.8381 -5.2162 3.3738 20 1 7.9825 -5.8738 3.4159 21 6 10.1215 -5.7436 3.4161 22 7 11.1643 -4.9421 3.3652 23 14 10.3684 -7.5907 3.5451 24 1 10.4277 -7.9833 4.9761 25 1 9.2352 -8.2889 2.8868 26 1 11.6389 -7.9683 2.8753 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 1.2669 -2.7508 1.0271 31 1 0.4957 -2.3055 -0.5140 32 1 2.0371 -3.1954 -0.5148 33 1 4.0094 -0.2769 -0.5131 34 1 4.0093 -2.0568 -0.5142 35 1 6.1033 -1.1674 0.9306 36 1 5.2519 0.6945 3.9397 37 1 6.5791 0.9060 2.7566 38 1 6.7104 0.0727 5.6517 39 1 7.9082 0.9713 4.6784 40 1 7.8425 -1.8716 5.2499 41 1 9.0401 -0.9731 4.2757 42 1 6.7745 -3.7031 2.3678 43 1 6.7673 -3.5800 4.1435 44 1 9.4256 -3.2716 3.2412 45 1 11.0360 -3.9830 3.2978 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753881222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:29 Heat of formation + Delta-G solvation = -96.774466 kcal Electronic energy + Delta-G solvation = -24458.176914 eV Core-core repulsion = 20895.349719 eV Total energy + Delta-G solvation = -3562.827195 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48110 -40.48493 -39.16207 -36.70084 -36.43099 -34.84884 -33.33966 -31.77390 -30.06973 -29.53820 -28.23058 -26.82604 -26.00320 -24.24124 -22.29680 -21.67553 -20.89779 -20.24871 -19.42530 -18.37052 -18.11990 -17.80885 -17.08278 -16.84517 -16.36628 -15.99427 -15.79603 -15.55440 -15.25107 -15.08969 -14.86232 -14.42665 -14.35622 -13.92762 -13.76232 -13.53710 -13.39503 -13.19259 -13.08500 -12.76603 -12.72982 -12.64300 -12.43888 -12.18536 -11.94700 -11.86457 -11.75892 -11.40848 -11.28592 -11.22025 -11.00927 -10.95017 -10.10204 -9.77934 -9.13042 -8.41700 -5.35474 1.45144 1.54836 1.57835 1.68171 1.82787 1.88676 2.33739 2.69445 3.32766 3.38392 3.56081 3.66763 3.72224 3.78973 4.00840 4.14252 4.27471 4.29506 4.33754 4.36409 4.38537 4.42723 4.46521 4.54567 4.55689 4.60187 4.73431 4.84276 4.90906 4.92053 5.03406 5.06183 5.12962 5.14232 5.18150 5.29660 5.36947 5.51949 5.56345 6.28997 6.47651 6.48987 7.06436 7.07902 7.18288 7.98306 8.09432 9.10700 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.003211 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.222625 B = 8718.856587 C = 9881.782962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.598 6.598 4 N -0.603 5.603 5 C 0.073 3.927 6 C 0.094 3.906 7 C 0.494 3.506 8 O -0.578 6.578 9 N -0.710 5.710 10 C 0.155 3.845 11 H 0.074 0.926 12 C -0.123 4.123 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.091 4.091 16 H 0.087 0.913 17 C 0.171 3.829 18 N -0.751 5.751 19 C -0.337 4.337 20 H 0.062 0.938 21 C -0.101 4.101 22 N -0.973 5.973 23 Si 1.129 2.871 24 H -0.286 1.286 25 H -0.273 1.273 26 H -0.291 1.291 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.145 0.855 35 H 0.414 0.586 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.017 0.983 43 H 0.007 0.993 44 H 0.363 0.637 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.122 8.918 -9.015 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.335 5.335 5 C -0.069 4.069 6 C -0.033 4.033 7 C 0.281 3.719 8 O -0.457 6.457 9 N -0.362 5.362 10 C 0.049 3.951 11 H 0.092 0.908 12 C -0.162 4.162 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.110 4.110 16 H 0.105 0.895 17 C 0.044 3.956 18 N -0.396 5.396 19 C -0.468 4.468 20 H 0.080 0.920 21 C -0.293 4.293 22 N -0.621 5.621 23 Si 0.954 3.046 24 H -0.213 1.213 25 H -0.199 1.199 26 H -0.217 1.217 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.140 0.860 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.162 0.838 35 H 0.251 0.749 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.196 0.804 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.500 8.081 -8.283 22.675 hybrid contribution -0.280 1.327 0.019 1.357 sum -19.780 9.408 -8.264 23.411 Atomic orbital electron populations 1.21949 0.88086 1.06007 1.06228 1.21689 0.92613 0.82412 0.73825 1.90681 1.72125 1.32966 1.52181 1.47660 1.05371 1.07949 1.72480 1.22124 0.98571 0.83652 1.02530 1.21466 0.82070 1.07423 0.92326 1.21796 0.82313 0.74753 0.93073 1.90658 1.56278 1.51092 1.47693 1.45904 1.07051 1.74465 1.08767 1.21761 0.93773 0.96402 0.83146 0.90822 1.22627 0.99046 0.95720 0.98830 1.22040 0.97444 0.97181 0.98384 1.22023 0.99775 0.96799 0.96375 1.22265 0.95440 0.93703 0.99577 0.89513 1.20666 0.86077 0.91937 0.96891 1.42496 1.02948 1.03984 1.90195 1.20386 0.94704 0.85053 1.46679 0.92031 1.27195 0.91041 1.10604 1.00432 1.70964 1.31380 1.03936 1.55859 0.82602 0.75636 0.69569 0.76787 1.21285 1.19857 1.21683 0.88081 0.89355 0.86022 0.93319 0.87491 0.89069 0.86724 0.83780 0.74898 0.92214 0.90188 0.91391 0.89923 0.93143 0.91777 0.96521 0.97508 0.80440 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.87 71.23 0.63 -1.32 16 2 C 0.50 11.11 7.78 87.65 0.68 11.79 16 3 O -0.60 -18.93 16.66 -3.04 -0.05 -18.98 16 4 N -0.60 -11.13 2.36 -851.16 -2.01 -13.14 16 5 C 0.07 0.79 10.29 127.77 1.31 2.11 16 6 C 0.09 1.74 5.93 85.63 0.51 2.25 16 7 C 0.49 13.01 7.90 87.65 0.69 13.70 16 8 O -0.58 -20.05 16.08 -3.03 -0.05 -20.09 16 9 N -0.71 -17.08 5.18 -436.46 -2.26 -19.35 16 10 C 0.16 4.36 2.69 46.28 0.12 4.49 16 11 H 0.07 2.46 7.47 -2.39 -0.02 2.44 16 12 C -0.12 -3.10 6.51 31.67 0.21 -2.89 16 13 C -0.11 -2.74 6.80 31.31 0.21 -2.53 16 14 C -0.11 -3.39 6.05 31.32 0.19 -3.20 16 15 C -0.09 -2.81 2.55 -9.73 -0.02 -2.84 16 16 H 0.09 2.57 8.02 -2.38 -0.02 2.55 16 17 C 0.17 6.96 5.57 86.38 0.48 7.44 16 18 N -0.75 -37.99 5.44 -343.47 -1.87 -39.86 16 19 C -0.34 -19.17 9.99 84.03 0.84 -18.33 16 20 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 21 C -0.10 -5.89 5.50 84.86 0.47 -5.42 16 22 N -0.97 -60.61 13.70 21.65 0.30 -60.31 16 23 Si 1.13 51.92 29.92 68.60 2.05 53.98 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 H 0.10 1.01 8.11 -2.39 -0.02 0.99 16 28 H 0.09 1.12 8.12 -2.38 -0.02 1.10 16 29 H 0.12 0.61 7.40 -2.39 -0.02 0.59 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.48 6.44 -2.39 -0.02 0.46 16 32 H 0.09 0.69 7.89 -2.38 -0.02 0.67 16 33 H 0.11 2.13 7.42 -2.38 -0.02 2.11 16 34 H 0.14 1.61 7.89 -2.39 -0.02 1.59 16 35 H 0.41 7.74 8.57 -92.71 -0.79 6.95 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.05 1.74 7.77 -2.39 -0.02 1.72 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.01 0.30 8.05 -2.39 -0.02 0.28 16 44 H 0.36 18.74 6.35 -92.71 -0.59 18.15 16 45 H 0.25 15.15 6.77 -92.71 -0.63 14.52 16 Total: -1.00 -82.53 368.20 2.18 -80.34 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: -0.25 Total: 32.17 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 6.32 Total: 5.24 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -5.84 Total: -132.65 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.10 Total: -39.08 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.98 kcal Total: -82.53 2.18 -80.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.433 kcal (2) G-P(sol) polarization free energy of solvation -82.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds