Wall clock time and date at job start Tue Mar 31 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21273 * 120.00046 * 2 1 4 4 N 1.34779 * 119.99792 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99963 * 0.02562 * 4 2 1 6 6 C 1.46493 * 119.99817 * 179.97438 * 4 2 1 7 7 C 1.50706 * 109.47433 * 270.00531 * 6 4 2 8 8 O 1.21274 * 119.99688 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99887 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99693 * 180.02562 * 9 7 6 11 11 H 1.09001 * 110.01610 * 326.38720 * 10 9 7 12 12 C 1.53868 * 110.03334 * 87.83049 * 10 9 7 13 13 C 1.54269 * 106.59896 * 119.28401 * 12 10 9 14 14 C 1.54881 * 104.19426 * 336.38907 * 13 12 10 15 15 C 1.54269 * 110.03014 * 205.00023 * 10 9 7 16 16 H 1.09000 * 110.48636 * 145.64714 * 15 10 9 17 17 C 1.52997 * 110.48655 * 23.13039 * 15 10 9 18 18 N 1.46501 * 109.46862 * 175.00113 * 17 15 10 19 19 C 1.36941 * 120.00031 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00020 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00160 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00185 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00125 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 90.00378 * 23 21 19 25 25 H 1.48498 * 109.46991 * 210.00189 * 23 21 19 26 26 H 1.48492 * 109.47027 * 330.00757 * 23 21 19 27 27 H 1.09000 * 109.47391 * 240.00100 * 1 2 3 28 28 H 1.09003 * 109.47576 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47199 * 119.99959 * 1 2 3 30 30 H 1.08994 * 109.47224 * 269.99259 * 5 4 2 31 31 H 1.08999 * 109.47814 * 29.99539 * 5 4 2 32 32 H 1.09006 * 109.47443 * 149.99289 * 5 4 2 33 33 H 1.08999 * 109.47106 * 150.00916 * 6 4 2 34 34 H 1.08994 * 109.47472 * 30.00509 * 6 4 2 35 35 H 0.97000 * 120.00190 * 359.97438 * 9 7 6 36 36 H 1.09006 * 110.03454 * 238.56804 * 12 10 9 37 37 H 1.08998 * 110.03410 * 0.02562 * 12 10 9 38 38 H 1.09001 * 110.48717 * 217.70688 * 13 12 10 39 39 H 1.09001 * 110.59681 * 95.12428 * 13 12 10 40 40 H 1.08995 * 110.75709 * 279.62546 * 14 13 12 41 41 H 1.09009 * 110.75741 * 156.25519 * 14 13 12 42 42 H 1.09002 * 109.47372 * 294.99905 * 17 15 10 43 43 H 1.08999 * 109.47182 * 55.00469 * 17 15 10 44 44 H 0.97001 * 120.00133 * 0.02562 * 18 17 15 45 45 H 0.96999 * 120.00349 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4483 -2.4359 0.0005 6 6 3.6458 -1.1672 0.0000 7 6 4.1476 -1.1681 -1.4211 8 8 3.3592 -1.1681 -2.3426 9 7 5.4726 -1.1687 -1.6678 10 6 5.9605 -1.1690 -3.0492 11 1 5.2802 -1.7356 -3.6850 12 6 6.0851 0.2755 -3.5644 13 6 7.5708 0.4898 -3.9204 14 6 8.3220 -0.5577 -3.0617 15 6 7.3747 -1.7822 -3.1101 16 1 7.5116 -2.3339 -4.0401 17 6 7.6143 -2.6960 -1.9066 18 7 8.9137 -3.3580 -2.0472 19 6 9.3464 -4.2288 -1.0829 20 1 8.7296 -4.4279 -0.2191 21 6 10.5773 -4.8564 -1.2164 22 7 11.3288 -4.6141 -2.2694 23 14 11.1678 -6.0437 0.0993 24 1 10.7108 -7.4172 -0.2323 25 1 12.6513 -6.0169 0.1603 26 1 10.6108 -5.6410 1.4155 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.2663 -2.7504 1.0281 31 1 0.4960 -2.3058 -0.5136 32 1 2.0375 -3.1958 -0.5130 33 1 4.0093 -2.0570 0.5141 34 1 4.0093 -0.2770 0.5131 35 1 6.1032 -1.1683 -0.9307 36 1 5.4655 0.4105 -4.4511 37 1 5.7831 0.9768 -2.7866 38 1 7.8854 1.4986 -3.6533 39 1 7.7412 0.3064 -4.9813 40 1 8.4429 -0.2030 -2.0382 41 1 9.2883 -0.7991 -3.5047 42 1 7.6060 -2.1025 -0.9923 43 1 6.8268 -3.4480 -1.8588 44 1 9.4679 -3.1789 -2.8229 45 1 12.1891 -5.0524 -2.3625 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:32 Heat of formation + Delta-G solvation = -63.560083 kcal Electronic energy + Delta-G solvation = -24673.888379 eV Core-core repulsion = 21112.501467 eV Total energy + Delta-G solvation = -3561.386912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48733 -39.48703 -37.82839 -35.56033 -34.40705 -33.44353 -31.44036 -30.96827 -28.74496 -28.50140 -27.31352 -25.93352 -24.49600 -22.33992 -21.28387 -20.29024 -19.49688 -19.16920 -17.64302 -17.21792 -17.08232 -16.47910 -15.79912 -15.33544 -15.04558 -14.83300 -14.55205 -14.22509 -13.73266 -13.59488 -13.53670 -13.25892 -13.05340 -12.90080 -12.85712 -12.69108 -12.39464 -12.29221 -11.98583 -11.48266 -11.25080 -10.89579 -10.85190 -10.78793 -10.48949 -10.35397 -10.32722 -10.11085 -10.02729 -10.00305 -9.71564 -8.91872 -8.90544 -8.86132 -6.95762 -5.79919 -3.08795 2.37043 2.68108 2.69751 3.40404 3.41413 3.45673 3.47574 4.37575 4.52079 4.67814 4.78892 4.83291 4.88095 4.92032 5.01784 5.07523 5.10076 5.16096 5.29827 5.40540 5.47558 5.52745 5.59271 5.65806 5.70248 5.80596 5.87218 5.95119 6.06451 6.09328 6.12996 6.22032 6.31456 6.50324 6.54058 6.68928 6.73572 6.81300 7.09242 7.60104 7.65470 7.94765 8.30402 8.38822 9.50124 10.07945 10.42505 11.42869 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.003549 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.057775 B = 7888.070842 C = 9216.341831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.545 6.545 4 N -0.601 5.601 5 C 0.081 3.919 6 C 0.092 3.908 7 C 0.498 3.502 8 O -0.540 6.540 9 N -0.716 5.716 10 C 0.150 3.850 11 H 0.087 0.913 12 C -0.131 4.131 13 C -0.125 4.125 14 C -0.112 4.112 15 C -0.107 4.107 16 H 0.087 0.913 17 C 0.165 3.835 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.404 0.596 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.015 0.985 43 H 0.019 0.981 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.060 7.885 3.239 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.306 3.694 3 O -0.422 6.422 4 N -0.334 5.334 5 C -0.062 4.062 6 C -0.034 4.034 7 C 0.282 3.718 8 O -0.417 6.417 9 N -0.369 5.369 10 C 0.045 3.955 11 H 0.105 0.895 12 C -0.170 4.170 13 C -0.163 4.163 14 C -0.150 4.150 15 C -0.126 4.126 16 H 0.105 0.895 17 C 0.037 3.963 18 N -0.374 5.374 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.242 0.758 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.315 8.339 2.738 21.216 hybrid contribution 0.928 -0.825 0.713 1.432 sum -18.387 7.514 3.451 20.161 Atomic orbital electron populations 1.21915 0.91528 1.05379 1.04146 1.20815 0.90759 0.82882 0.74986 1.90714 1.70788 1.31115 1.49549 1.47428 1.05290 1.07002 1.73679 1.21836 0.97526 0.85114 1.01677 1.21337 0.81445 1.05828 0.94825 1.21086 0.82750 0.76056 0.91871 1.90664 1.55410 1.49495 1.46091 1.46244 1.06662 1.74565 1.09477 1.21593 0.95569 0.96045 0.82332 0.89520 1.22562 0.96935 0.96405 1.01073 1.22386 0.94591 0.99255 1.00068 1.22504 0.98511 0.93932 1.00042 1.22477 0.92486 0.96626 1.01031 0.89494 1.20566 0.89439 0.92760 0.93500 1.42346 1.17081 1.51649 1.26321 1.19203 1.00533 1.17106 1.00370 0.91267 1.24741 0.97326 1.00807 0.98031 1.69657 1.12591 1.46838 1.28991 0.86197 0.77845 0.81112 0.81064 1.21738 1.21767 1.20773 0.89411 0.89089 0.89186 0.92213 0.90669 0.90725 0.87187 0.86898 0.75850 0.91642 0.91514 0.91933 0.91694 0.91445 0.90829 0.96736 0.96324 0.78188 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.87 36.00 0.32 -0.92 16 2 C 0.52 6.16 7.78 -10.99 -0.09 6.07 16 3 O -0.54 -8.82 16.66 5.56 0.09 -8.72 16 4 N -0.60 -6.31 2.36 -182.96 -0.43 -6.74 16 5 C 0.08 0.57 10.24 59.85 0.61 1.18 16 6 C 0.09 1.00 5.89 -5.19 -0.03 0.97 16 7 C 0.50 6.93 7.89 -10.98 -0.09 6.85 16 8 O -0.54 -9.32 16.08 5.56 0.09 -9.23 16 9 N -0.72 -9.50 4.34 -52.72 -0.23 -9.73 16 10 C 0.15 2.14 3.12 -66.81 -0.21 1.93 16 11 H 0.09 1.35 7.56 -51.93 -0.39 0.95 16 12 C -0.13 -1.74 6.59 -25.62 -0.17 -1.91 16 13 C -0.13 -1.58 6.83 -25.07 -0.17 -1.75 16 14 C -0.11 -1.66 6.20 -24.74 -0.15 -1.82 16 15 C -0.11 -1.68 2.84 -88.96 -0.25 -1.93 16 16 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 17 C 0.17 3.11 4.74 -4.04 -0.02 3.10 16 18 N -0.73 -17.80 5.49 -59.91 -0.33 -18.13 16 19 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 H 0.09 0.41 8.11 -51.93 -0.42 -0.01 16 28 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.09 0.55 7.40 -51.93 -0.38 0.17 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 32 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.11 0.88 8.07 -51.93 -0.42 0.47 16 34 H 0.11 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.40 4.91 6.57 -40.82 -0.27 4.64 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.02 7.97 -51.93 -0.41 0.60 16 41 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 42 H 0.02 0.27 6.42 -51.93 -0.33 -0.06 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 9.93 7.64 -40.82 -0.31 9.62 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -35.27 366.20 -7.50 -42.77 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.42 Total: 9.74 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.49 Total: 4.60 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.27 Total: -61.65 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.18 Total: -17.95 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.27 -7.50 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.787 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds