Wall clock time and date at job start Tue Mar 31 2020 03:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21275 * 119.99632 * 2 1 4 4 N 1.34769 * 119.99690 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99686 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.47068 * 324.99893 * 5 4 2 7 7 C 1.53002 * 109.47411 * 84.99974 * 5 4 2 8 8 C 1.52997 * 109.47415 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46978 * 300.00098 * 8 7 5 10 10 C 1.53002 * 109.47128 * 59.99726 * 9 8 7 11 11 C 1.52992 * 109.47106 * 300.00123 * 10 9 8 12 12 H 1.09002 * 109.47103 * 299.99915 * 11 10 9 13 13 C 1.52999 * 109.46961 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47552 * 64.99810 * 13 11 10 15 15 C 1.46897 * 111.00002 * 180.02562 * 14 13 11 16 16 C 1.50711 * 109.47169 * 179.97438 * 15 14 13 17 17 O 1.21291 * 119.99369 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00007 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99591 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00320 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99626 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00258 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99927 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47099 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47425 * 119.99699 * 23 21 19 26 26 H 1.48510 * 109.46709 * 239.99448 * 23 21 19 27 27 H 1.09006 * 109.47337 * 239.99996 * 1 2 3 28 28 H 1.09006 * 109.47422 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47353 * 120.00431 * 1 2 3 30 30 H 0.97000 * 120.00680 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.46986 * 300.00092 * 7 5 4 32 32 H 1.09002 * 109.47075 * 59.99363 * 7 5 4 33 33 H 1.09002 * 109.47045 * 59.99931 * 8 7 5 34 34 H 1.08998 * 109.47171 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.46698 * 179.97438 * 9 8 7 36 36 H 1.09002 * 109.46838 * 299.99316 * 9 8 7 37 37 H 1.09002 * 109.47070 * 60.00059 * 10 9 8 38 38 H 1.08996 * 109.46550 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.47565 * 185.00168 * 13 11 10 40 40 H 1.09000 * 109.46738 * 304.99649 * 13 11 10 41 41 H 1.00899 * 110.99931 * 56.04384 * 14 13 11 42 42 H 1.08992 * 109.47483 * 299.99823 * 15 14 13 43 43 H 1.08998 * 109.47598 * 60.00204 * 15 14 13 44 44 H 0.97000 * 119.99655 * 359.97438 * 18 16 15 45 45 H 0.96993 * 120.00017 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0089 -0.3252 -0.5905 7 6 4.1565 -1.0418 1.4357 8 6 5.6864 -1.0424 1.4352 9 6 6.1957 -2.3499 0.8253 10 6 5.6850 -2.4753 -0.6116 11 6 4.1551 -2.4747 -0.6109 12 1 3.7916 -3.3164 -0.0214 13 6 3.6445 -2.6007 -2.0477 14 7 4.0323 -3.9087 -2.5923 15 6 3.5584 -4.0652 -3.9739 16 6 3.9746 -5.4156 -4.4979 17 8 4.6038 -6.1732 -3.7898 18 7 3.6478 -5.7814 -5.7532 19 6 4.0260 -7.0100 -6.2296 20 1 4.5862 -7.6846 -5.5992 21 6 3.6895 -7.3868 -7.5240 22 7 3.0083 -6.5658 -8.2913 23 14 4.2042 -9.0612 -8.1729 24 1 4.9554 -9.7906 -7.1200 25 1 2.9965 -9.8391 -8.5489 26 1 5.0705 -8.8846 -9.3662 27 1 -0.3634 -0.5139 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3634 -0.5139 -0.8899 30 1 1.6958 -2.0072 -0.0005 31 1 3.7933 -0.1105 1.8704 32 1 3.7933 -1.8837 2.0252 33 1 6.0499 -0.2007 0.8457 34 1 6.0502 -0.9526 2.4588 35 1 7.2856 -2.3502 0.8245 36 1 5.8322 -3.1916 1.4149 37 1 6.0485 -1.6336 -1.2011 38 1 6.0482 -3.4066 -1.0461 39 1 2.5583 -2.5111 -2.0565 40 1 4.0792 -1.8094 -2.6584 41 1 3.6955 -4.6584 -2.0070 42 1 2.4716 -3.9857 -3.9964 43 1 3.9928 -3.2842 -4.5978 44 1 3.1443 -5.1756 -6.3193 45 1 2.7731 -6.8290 -9.1948 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754337326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:22 Heat of formation + Delta-G solvation = -100.323043 kcal Electronic energy + Delta-G solvation = -24154.548102 eV Core-core repulsion = 20591.567029 eV Total energy + Delta-G solvation = -3562.981073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35549 -38.59356 -38.09710 -35.35005 -34.36778 -33.85397 -31.44998 -31.09281 -30.85512 -28.71796 -27.02553 -24.84596 -23.45685 -22.64459 -21.19018 -20.69935 -19.99628 -19.22174 -17.90330 -17.04509 -16.65918 -16.15039 -15.52472 -15.44610 -14.85494 -14.61875 -14.39406 -14.24869 -14.04992 -13.89009 -13.66874 -13.40711 -13.11241 -12.84100 -12.70395 -12.46016 -12.20891 -11.96961 -11.87434 -11.56148 -11.49194 -11.34500 -11.08627 -11.02146 -10.68463 -10.58197 -10.35497 -10.32857 -10.23036 -9.96938 -9.52917 -9.21955 -8.46030 -8.05155 -7.96526 -6.42744 -3.83611 2.43915 3.00034 3.15490 3.26135 3.33342 3.89934 4.03770 4.24753 4.51653 4.57878 4.65021 4.79944 4.93263 5.00667 5.03418 5.08531 5.17696 5.20261 5.24902 5.31004 5.34859 5.36000 5.52948 5.57207 5.66477 5.74662 5.79579 5.86391 5.94715 5.97896 5.98169 6.06096 6.07298 6.25416 6.29859 6.37587 6.44497 7.20057 7.28982 7.54444 7.65182 8.01868 8.05645 8.60258 9.17029 9.53514 10.04794 10.75096 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.002801 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.813328 B = 9993.640980 C =11042.318300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.727 5.727 5 C 0.150 3.850 6 H 0.088 0.912 7 C -0.125 4.125 8 C -0.117 4.117 9 C -0.123 4.123 10 C -0.105 4.105 11 C -0.088 4.088 12 H 0.075 0.925 13 C 0.064 3.936 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.347 0.653 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 11.903 17.134 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.378 5.378 5 C 0.045 3.955 6 H 0.107 0.893 7 C -0.164 4.164 8 C -0.155 4.155 9 C -0.160 4.160 10 C -0.143 4.143 11 C -0.107 4.107 12 H 0.093 0.907 13 C -0.066 4.066 14 N -0.298 5.298 15 C -0.081 4.081 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.234 0.766 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.167 0.833 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.089 12.328 17.210 21.273 hybrid contribution -1.411 -0.968 -0.713 1.854 sum -3.501 11.361 16.496 20.333 Atomic orbital electron populations 1.21936 0.91892 1.05469 1.04280 1.20798 0.90558 0.83575 0.75348 1.90718 1.70891 1.31418 1.49554 1.46192 1.07490 1.08688 1.75419 1.21037 0.78916 0.98920 0.96660 0.89348 1.21879 0.96148 1.02068 0.96317 1.21505 0.94711 0.98398 1.00864 1.21606 1.00457 0.97265 0.96689 1.21465 0.93024 1.03757 0.96005 1.21396 0.97411 0.96277 0.95663 0.90708 1.22002 0.97125 0.92791 0.94687 1.60033 1.64188 1.03201 1.02338 1.21660 0.97598 0.97996 0.90892 1.19817 0.85526 0.88513 0.83489 1.90520 1.44075 1.54316 1.57818 1.41878 1.49524 1.17082 1.11620 1.19753 1.32810 0.92972 0.97288 0.87870 1.25267 0.96945 0.99699 0.96075 1.69621 1.39002 1.36493 1.09221 0.85803 0.78269 0.81496 0.78800 1.19204 1.20779 1.20732 0.89501 0.89065 0.89337 0.76574 0.91710 0.91900 0.91827 0.92017 0.91852 0.92014 0.92035 0.89480 0.95592 0.91089 0.83341 0.94061 0.89695 0.77481 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 10.32 36.01 0.37 -0.72 16 2 C 0.51 5.11 7.90 -10.99 -0.09 5.03 16 3 O -0.55 -7.93 16.75 5.56 0.09 -7.84 16 4 N -0.73 -6.13 4.31 -53.80 -0.23 -6.37 16 5 C 0.15 1.44 1.90 -67.93 -0.13 1.31 16 6 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 7 C -0.13 -1.14 5.49 -26.73 -0.15 -1.28 16 8 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 9 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 10 C -0.10 -1.11 5.09 -26.73 -0.14 -1.25 16 11 C -0.09 -0.87 1.90 -90.63 -0.17 -1.04 16 12 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 13 C 0.06 0.74 4.99 -3.83 -0.02 0.72 16 14 N -0.67 -10.12 5.58 -115.06 -0.64 -10.76 16 15 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.28 7.82 -10.98 -0.09 10.20 16 17 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 18 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 2.52 8.39 -40.82 -0.34 2.17 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.11 7.75 -51.93 -0.40 0.71 16 39 H 0.03 0.28 7.30 -51.93 -0.38 -0.10 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -32.85 367.03 -8.11 -40.96 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.60 Total: 12.69 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -0.99 Total: 3.43 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.21 Total: -55.18 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.85 -8.11 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754337326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.363 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds