Wall clock time and date at job start Tue Mar 31 2020 03:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21278 * 119.99656 * 2 1 4 4 N 1.34774 * 119.99672 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99918 * 180.02562 * 4 2 1 6 6 H 1.08999 * 109.46997 * 34.99873 * 5 4 2 7 7 C 1.53000 * 109.47006 * 274.99816 * 5 4 2 8 8 C 1.53002 * 109.46970 * 299.99997 * 7 5 4 9 9 C 1.52997 * 109.47133 * 299.99771 * 8 7 5 10 10 C 1.53000 * 109.47006 * 60.00251 * 9 8 7 11 11 C 1.52994 * 109.47085 * 300.00020 * 10 9 8 12 12 H 1.09005 * 109.47345 * 299.99857 * 11 10 9 13 13 C 1.53000 * 109.47085 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47234 * 64.99829 * 13 11 10 15 15 C 1.46902 * 110.99800 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46577 * 180.02562 * 15 14 13 17 17 O 1.21288 * 120.00224 * 359.72334 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00025 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99595 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00115 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99938 * 23 21 19 27 27 H 1.09003 * 109.47036 * 270.00426 * 1 2 3 28 28 H 1.09009 * 109.46618 * 29.99815 * 1 2 3 29 29 H 1.08999 * 109.47351 * 149.99418 * 1 2 3 30 30 H 0.97004 * 119.99896 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.47054 * 180.02562 * 7 5 4 32 32 H 1.09003 * 109.47135 * 59.99541 * 7 5 4 33 33 H 1.09002 * 109.46808 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47213 * 60.00121 * 8 7 5 35 35 H 1.08997 * 109.47356 * 300.00262 * 9 8 7 36 36 H 1.09003 * 109.47047 * 179.97438 * 9 8 7 37 37 H 1.09003 * 109.47125 * 179.97438 * 10 9 8 38 38 H 1.09010 * 109.47351 * 59.99992 * 10 9 8 39 39 H 1.08993 * 109.47319 * 304.99784 * 13 11 10 40 40 H 1.09002 * 109.47089 * 184.99839 * 13 11 10 41 41 H 1.00898 * 110.99743 * 56.04920 * 14 13 11 42 42 H 1.09000 * 109.47263 * 60.00269 * 15 14 13 43 43 H 1.09001 * 109.47582 * 299.99548 * 15 14 13 44 44 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 1 4.0090 -0.3259 0.5902 7 6 4.1564 -1.0407 -1.4367 8 6 3.6467 -2.2218 -2.2650 9 6 4.1564 -3.5295 -1.6560 10 6 3.6459 -3.6561 -0.2193 11 6 4.1556 -2.4751 0.6090 12 1 5.2456 -2.4751 0.6094 13 6 3.6456 -2.6020 2.0459 14 7 4.2315 -3.7959 2.6698 15 6 3.7637 -3.9500 4.0538 16 6 4.3850 -5.1821 4.6597 17 8 5.1390 -5.8673 4.0017 18 7 4.0988 -5.5253 5.9313 19 6 4.6636 -6.6463 6.4824 20 1 5.3381 -7.2543 5.8977 21 6 4.3681 -7.0005 7.7932 22 7 3.5470 -6.2610 8.5044 23 14 5.1382 -8.5276 8.5443 24 1 6.4234 -8.1654 9.1942 25 1 4.2155 -9.1002 9.5571 26 1 5.3880 -9.5313 7.4787 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6958 -2.0073 -0.0013 31 1 5.2464 -1.0412 -1.4363 32 1 3.7932 -0.1090 -1.8706 33 1 4.0100 -2.1313 -3.2887 34 1 2.5567 -2.2217 -2.2654 35 1 5.2464 -3.5295 -1.6556 36 1 3.7929 -4.3710 -2.2459 37 1 4.0087 -4.5880 0.2144 38 1 2.5558 -3.6561 -0.2197 39 1 2.5593 -2.6916 2.0393 40 1 3.9337 -1.7170 2.6132 41 1 5.2393 -3.7668 2.6303 42 1 2.6782 -4.0487 4.0615 43 1 4.0531 -3.0744 4.6348 44 1 3.4927 -4.9795 6.4562 45 1 3.3410 -6.5080 9.4195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754337329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:26 Heat of formation + Delta-G solvation = -121.176172 kcal Electronic energy + Delta-G solvation = -24299.494944 eV Core-core repulsion = 20735.609611 eV Total energy + Delta-G solvation = -3563.885333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34574 -40.14009 -39.20446 -36.65480 -35.79794 -34.66011 -33.28722 -32.30932 -31.62518 -29.65152 -28.43861 -26.43889 -24.67558 -23.46444 -22.23751 -21.89831 -21.05332 -20.03035 -19.87820 -18.03970 -17.79959 -16.98491 -16.90075 -16.51028 -16.36030 -16.04586 -15.80494 -15.30841 -15.21664 -14.94565 -14.82969 -14.66460 -14.15688 -13.64724 -13.52917 -13.40642 -13.25949 -13.19853 -12.97352 -12.90073 -12.82803 -12.64080 -12.56813 -12.41456 -12.11929 -11.84645 -11.50485 -11.38874 -11.24769 -10.95292 -10.87121 -10.34136 -10.01504 -9.97848 -9.31138 -8.46712 -5.95430 1.38130 1.42032 1.54787 1.71187 2.05546 2.29115 2.36115 2.89170 3.20712 3.48608 3.74179 3.83146 3.83949 4.02643 4.16924 4.27777 4.33124 4.36821 4.47320 4.50391 4.55743 4.56550 4.60600 4.66465 4.69703 4.71710 4.78721 4.91269 5.01469 5.10153 5.18934 5.23146 5.29233 5.37543 5.41004 5.53300 5.56500 5.63603 5.88519 6.09881 6.38885 6.60080 6.63787 7.12679 7.32689 7.56456 8.11570 8.70742 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.002742 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.200737 B =10207.418362 C =10993.510443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.710 5.710 5 C 0.156 3.844 6 H 0.066 0.934 7 C -0.124 4.124 8 C -0.110 4.110 9 C -0.118 4.118 10 C -0.103 4.103 11 C -0.081 4.081 12 H 0.082 0.918 13 C 0.068 3.932 14 N -0.673 5.673 15 C 0.065 3.935 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.412 0.588 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.026 0.974 41 H 0.343 0.657 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 10.622 -18.336 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.294 3.706 3 O -0.483 6.483 4 N -0.363 5.363 5 C 0.051 3.949 6 H 0.084 0.916 7 C -0.163 4.163 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.141 4.141 11 C -0.100 4.100 12 H 0.100 0.900 13 C -0.060 4.060 14 N -0.305 5.305 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.250 0.750 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.161 0.839 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.301 10.443 -18.827 22.432 hybrid contribution 0.509 -0.015 1.434 1.522 sum -5.792 10.428 -17.392 21.090 Atomic orbital electron populations 1.21915 0.88800 1.06066 1.05953 1.21494 0.92066 0.82954 0.74127 1.90695 1.72102 1.33225 1.52300 1.46178 1.06923 1.09013 1.74163 1.20801 0.80415 0.97131 0.96596 0.91608 1.21839 1.01169 0.98631 0.94638 1.21450 1.00978 0.93615 0.98685 1.21552 1.00806 0.97542 0.95633 1.21432 1.00614 0.97556 0.94448 1.21320 1.01091 0.94196 0.93394 0.90004 1.22033 1.00291 0.89632 0.94093 1.60111 1.13981 1.40614 1.15754 1.21526 1.01156 0.94153 0.89931 1.20864 0.85234 0.89096 0.82196 1.90489 1.41593 1.56606 1.62092 1.41941 1.42669 1.24889 1.11627 1.19670 1.26128 1.03716 0.96804 0.90288 1.26040 0.97117 1.01948 0.96175 1.69673 1.35484 1.40237 1.10808 0.84935 0.78097 0.77495 0.77866 1.19683 1.19543 1.19699 0.87696 0.89035 0.87586 0.75002 0.90739 0.92915 0.91520 0.91593 0.92248 0.91327 0.92010 0.91410 0.90081 0.95575 0.83908 0.87737 0.92192 0.77026 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.30 71.24 0.73 -0.95 16 2 C 0.50 9.41 7.90 87.66 0.69 10.10 16 3 O -0.60 -17.27 16.76 -3.02 -0.05 -17.32 16 4 N -0.71 -10.79 3.62 -442.53 -1.60 -12.39 16 5 C 0.16 2.81 2.23 44.99 0.10 2.91 16 6 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 7 C -0.12 -2.07 5.60 30.60 0.17 -1.90 16 8 C -0.11 -1.51 5.77 30.59 0.18 -1.34 16 9 C -0.12 -1.77 5.92 30.59 0.18 -1.59 16 10 C -0.10 -1.81 4.92 30.59 0.15 -1.66 16 11 C -0.08 -1.48 2.12 -10.80 -0.02 -1.50 16 12 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 13 C 0.07 1.48 4.84 86.30 0.42 1.90 16 14 N -0.67 -19.88 5.58 -517.91 -2.89 -22.77 16 15 C 0.06 2.16 6.17 85.56 0.53 2.69 16 16 C 0.44 20.60 7.82 87.66 0.69 21.28 16 17 O -0.62 -33.97 15.78 -3.05 -0.05 -34.02 16 18 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 19 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 23 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.41 4.51 6.67 -92.71 -0.62 3.89 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.84 7.60 -2.39 -0.02 0.82 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.44 7.75 -2.39 -0.02 1.43 16 38 H 0.07 1.01 6.51 -2.38 -0.02 0.99 16 39 H 0.08 1.59 7.61 -2.39 -0.02 1.57 16 40 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.34 10.87 8.43 -89.70 -0.76 10.11 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 45 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -71.55 362.96 0.09 -71.45 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -1.10 Total: 38.88 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.10 Total: 11.62 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -5.83 Total: -115.40 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.10 Total: -51.34 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.55 0.09 -71.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754337329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.724 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds