Wall clock time and date at job start Tue Mar 31 2020 03:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47209 * 2 1 4 4 C 1.46503 * 119.99668 * 269.99952 * 3 2 1 5 5 C 1.50704 * 109.47464 * 269.99959 * 4 3 2 6 6 H 1.08001 * 119.99471 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00256 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47327 * 89.99736 * 9 7 5 11 11 H 1.48497 * 109.47196 * 209.99520 * 9 7 5 12 12 H 1.48510 * 109.47246 * 329.99754 * 9 7 5 13 13 C 1.34776 * 120.00324 * 90.00124 * 3 2 1 14 14 O 1.21279 * 119.99904 * 180.02562 * 13 3 2 15 15 C 1.50692 * 119.99938 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47476 * 180.02562 * 15 13 3 17 17 C 1.47485 * 111.00094 * 265.97021 * 16 15 13 18 18 C 1.53514 * 87.93428 * 221.29311 * 17 16 15 19 19 N 1.46497 * 114.17173 * 139.67032 * 18 17 16 20 20 C 1.46501 * 119.99613 * 326.16338 * 19 18 17 21 21 C 1.34769 * 120.00009 * 146.15744 * 19 18 17 22 22 C 1.50706 * 120.00014 * 185.22381 * 21 19 18 23 23 O 1.21278 * 120.00192 * 5.23084 * 21 19 18 24 24 C 1.47478 * 111.00514 * 169.99801 * 16 15 13 25 25 H 1.09006 * 109.46980 * 300.00013 * 1 2 3 26 26 H 1.08997 * 109.47433 * 59.99903 * 1 2 3 27 27 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47087 * 239.99645 * 2 1 3 29 29 H 1.09005 * 109.47240 * 119.99888 * 2 1 3 30 30 H 1.09002 * 109.47251 * 29.99984 * 4 3 2 31 31 H 1.09007 * 109.46711 * 149.99930 * 4 3 2 32 32 H 0.96995 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47287 * 300.00093 * 15 13 3 34 34 H 1.09000 * 109.47542 * 59.99793 * 15 13 3 35 35 H 1.08994 * 113.47477 * 336.06403 * 17 16 15 36 36 H 1.09001 * 113.47374 * 106.52578 * 17 16 15 37 37 H 1.08999 * 114.17057 * 272.37785 * 18 17 16 38 38 H 1.08992 * 109.47703 * 95.22768 * 20 19 18 39 39 H 1.09010 * 109.46935 * 215.22450 * 20 19 18 40 40 H 1.08997 * 109.47468 * 335.21847 * 20 19 18 41 41 H 1.09005 * 109.46811 * 5.27127 * 22 21 19 42 42 H 1.09003 * 109.46965 * 125.26844 * 22 21 19 43 43 H 1.08996 * 109.47111 * 245.27199 * 22 21 19 44 44 H 1.08993 * 113.48043 * 253.47017 * 24 16 15 45 45 H 1.09005 * 113.47684 * 23.93822 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3904 -2.8776 8 7 3.3493 3.1264 -3.6178 9 14 5.9133 2.0962 -3.4173 10 1 5.9759 0.8757 -4.2608 11 1 6.3928 3.2637 -4.1997 12 1 6.7735 1.9154 -2.2203 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9924 1.3061 2.4722 16 7 2.3099 2.2063 3.5887 17 6 3.6950 2.0040 4.0533 18 6 3.1720 2.1286 5.4912 19 7 3.7792 1.1862 6.4343 20 6 4.1653 -0.1535 5.9846 21 6 3.9827 1.5518 7.7154 22 6 4.7131 0.6279 8.6557 23 8 3.5779 2.6242 8.1116 24 6 1.8559 1.6379 4.8716 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6752 3.5168 -4.4437 33 1 0.9446 1.0115 2.5302 34 1 2.6229 0.4188 2.5298 35 1 4.0914 1.0159 3.8196 36 1 4.3713 2.8090 3.7660 37 1 3.1348 3.1517 5.8655 38 1 5.2205 -0.1552 5.7117 39 1 3.9971 -0.8694 6.7892 40 1 3.5656 -0.4330 5.1184 41 1 5.0791 -0.2376 8.1033 42 1 5.5552 1.1562 9.1029 43 1 4.0333 0.2969 9.4408 44 1 0.9737 2.1325 5.2778 45 1 1.7616 0.5520 4.8563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754569045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:59 Heat of formation + Delta-G solvation = -17.467438 kcal Electronic energy + Delta-G solvation = -24663.244218 eV Core-core repulsion = 21103.856033 eV Total energy + Delta-G solvation = -3559.388185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03970 -39.39601 -38.42052 -35.38754 -35.11568 -32.83595 -31.16345 -30.09918 -29.48645 -27.55991 -26.94237 -26.06042 -24.60537 -23.02324 -22.28134 -20.47148 -19.33065 -18.37918 -17.46748 -16.71031 -16.62079 -16.32641 -16.12452 -15.40674 -15.31159 -14.78080 -14.46583 -14.15665 -13.82813 -13.47279 -13.36543 -13.33761 -13.11575 -12.87595 -12.70298 -12.48756 -12.33360 -12.27771 -12.02960 -11.89226 -11.50875 -11.23534 -11.07968 -10.95468 -10.90281 -10.70189 -10.53064 -10.12405 -10.10167 -9.62764 -9.14146 -8.92999 -8.61691 -8.43247 -7.63093 -6.03731 -4.08567 2.31567 2.62163 3.28982 3.35965 3.38963 3.47386 3.70021 4.17037 4.23800 4.36213 4.45176 4.60696 4.67758 4.81397 4.95534 4.96857 5.02482 5.10980 5.15175 5.18338 5.25122 5.28110 5.30831 5.42944 5.47040 5.56934 5.61484 5.73753 5.75389 5.89026 5.98642 6.16707 6.20845 6.23112 6.45778 6.81894 7.07206 7.12711 7.47535 7.57830 7.87473 7.93109 8.24689 8.45874 8.91730 9.16603 9.56615 11.04339 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003356 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.140834 B = 8340.104346 C = 9041.155587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.003 3.997 16 N -0.439 5.439 17 C -0.007 4.007 18 C 0.118 3.882 19 N -0.608 5.608 20 C 0.073 3.927 21 C 0.513 3.487 22 C -0.176 4.176 23 O -0.543 6.543 24 C -0.017 4.017 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -12.879 19.547 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.394 6.394 15 C -0.129 4.129 16 N -0.161 5.161 17 C -0.137 4.137 18 C 0.014 3.986 19 N -0.341 5.341 20 C -0.070 4.070 21 C 0.302 3.698 22 C -0.236 4.236 23 O -0.420 6.420 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.632 -10.925 19.308 22.244 hybrid contribution 1.157 -1.310 -0.486 1.814 sum -0.475 -12.235 18.822 22.454 Atomic orbital electron populations 1.22231 0.96855 1.01307 1.02405 1.21378 0.93476 0.84430 1.02378 1.48271 1.64381 1.13149 1.07708 1.19244 0.96140 0.93686 0.78074 1.21427 0.96961 1.31836 1.06201 0.92615 1.24936 0.97806 0.94933 0.96448 1.69929 1.35683 1.33415 1.14318 0.86510 0.84744 0.77671 0.78558 1.20681 1.21064 1.19959 1.19991 0.79132 0.87131 0.84478 1.90682 1.44367 1.17570 1.86762 1.22709 1.02694 0.94826 0.92679 1.68790 1.06136 1.40953 1.00211 1.24408 0.93903 1.02469 0.92930 1.22756 0.92829 0.95288 0.87726 1.47914 1.61708 1.14706 1.09816 1.21849 1.00935 0.83077 1.01156 1.20860 0.79125 0.87549 0.82264 1.21983 1.01996 0.99975 0.99604 1.90731 1.50915 1.24368 1.75979 1.24392 0.99591 0.99233 0.91492 0.93142 0.91930 0.92253 0.89980 0.92201 0.95099 0.93905 0.92719 0.88536 0.91547 0.90820 0.88458 0.84942 0.91952 0.90634 0.90759 0.90113 0.88679 0.88810 0.88919 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.59 2.46 -175.06 -0.43 -13.02 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.47 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 10.61 7.74 -10.99 -0.09 10.53 16 14 O -0.52 -13.47 16.01 5.56 0.09 -13.38 16 15 C 0.00 0.04 3.85 -4.98 -0.02 0.02 16 16 N -0.44 -6.49 5.82 -246.10 -1.43 -7.92 16 17 C -0.01 -0.10 7.11 -7.54 -0.05 -0.15 16 18 C 0.12 1.37 4.52 -67.71 -0.31 1.07 16 19 N -0.61 -5.69 3.11 -173.62 -0.54 -6.23 16 20 C 0.07 0.42 8.44 59.85 0.51 0.92 16 21 C 0.51 5.37 7.77 -10.99 -0.09 5.29 16 22 C -0.18 -1.03 9.90 36.01 0.36 -0.68 16 23 O -0.54 -8.17 16.64 5.56 0.09 -8.08 16 24 C -0.02 -0.19 7.23 -7.55 -0.05 -0.24 16 25 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 1.22 7.12 -51.93 -0.37 0.85 16 34 H 0.07 0.82 6.56 -51.93 -0.34 0.48 16 35 H 0.07 0.82 5.72 -51.93 -0.30 0.52 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.13 1.82 7.34 -51.93 -0.38 1.43 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.26 6.63 -51.92 -0.34 -0.08 16 40 H 0.07 0.42 5.99 -51.93 -0.31 0.11 16 41 H 0.08 0.29 5.82 -51.93 -0.30 -0.01 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -36.78 363.26 -8.00 -44.78 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -7.14 Total: -1.92 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 0.17 Total: 9.48 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -1.67 Total: -53.17 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.18 Total: -21.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.78 -8.00 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754569045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.315 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds