Wall clock time and date at job start Tue Mar 31 2020 03:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47209 * 2 1 4 4 C 1.46503 * 119.99668 * 269.99952 * 3 2 1 5 5 C 1.50704 * 109.47464 * 269.99959 * 4 3 2 6 6 H 1.08001 * 119.99471 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00256 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99700 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47327 * 89.99736 * 9 7 5 11 11 H 1.48497 * 109.47196 * 209.99520 * 9 7 5 12 12 H 1.48510 * 109.47246 * 329.99754 * 9 7 5 13 13 C 1.34776 * 120.00324 * 90.00124 * 3 2 1 14 14 O 1.21279 * 119.99904 * 180.02562 * 13 3 2 15 15 C 1.50692 * 119.99938 * 0.02562 * 13 3 2 16 16 N 1.46893 * 109.47476 * 180.02562 * 15 13 3 17 17 C 1.47485 * 111.00094 * 265.97021 * 16 15 13 18 18 C 1.53514 * 87.93428 * 221.29311 * 17 16 15 19 19 N 1.46497 * 114.17173 * 139.67032 * 18 17 16 20 20 C 1.46501 * 119.99613 * 326.16338 * 19 18 17 21 21 C 1.34769 * 120.00009 * 146.15744 * 19 18 17 22 22 C 1.50706 * 120.00014 * 185.22381 * 21 19 18 23 23 O 1.21278 * 120.00192 * 5.23084 * 21 19 18 24 24 C 1.47478 * 111.00514 * 169.99801 * 16 15 13 25 25 H 1.09006 * 109.46980 * 300.00013 * 1 2 3 26 26 H 1.08997 * 109.47433 * 59.99903 * 1 2 3 27 27 H 1.09002 * 109.47291 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47087 * 239.99645 * 2 1 3 29 29 H 1.09005 * 109.47240 * 119.99888 * 2 1 3 30 30 H 1.09002 * 109.47251 * 29.99984 * 4 3 2 31 31 H 1.09007 * 109.46711 * 149.99930 * 4 3 2 32 32 H 0.96995 * 120.00333 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47287 * 300.00093 * 15 13 3 34 34 H 1.09000 * 109.47542 * 59.99793 * 15 13 3 35 35 H 1.08994 * 113.47477 * 336.06403 * 17 16 15 36 36 H 1.09001 * 113.47374 * 106.52578 * 17 16 15 37 37 H 1.08999 * 114.17057 * 272.37785 * 18 17 16 38 38 H 1.08992 * 109.47703 * 95.22768 * 20 19 18 39 39 H 1.09010 * 109.46935 * 215.22450 * 20 19 18 40 40 H 1.08997 * 109.47468 * 335.21847 * 20 19 18 41 41 H 1.09005 * 109.46811 * 5.27127 * 22 21 19 42 42 H 1.09003 * 109.46965 * 125.26844 * 22 21 19 43 43 H 1.08996 * 109.47111 * 245.27199 * 22 21 19 44 44 H 1.08993 * 113.48043 * 253.47017 * 24 16 15 45 45 H 1.09005 * 113.47684 * 23.93822 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0959 7 6 4.1493 2.3904 -2.8776 8 7 3.3493 3.1264 -3.6178 9 14 5.9133 2.0962 -3.4173 10 1 5.9759 0.8757 -4.2608 11 1 6.3928 3.2637 -4.1997 12 1 6.7735 1.9154 -2.2203 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9924 1.3061 2.4722 16 7 2.3099 2.2063 3.5887 17 6 3.6950 2.0040 4.0533 18 6 3.1720 2.1286 5.4912 19 7 3.7792 1.1862 6.4343 20 6 4.1653 -0.1535 5.9846 21 6 3.9827 1.5518 7.7154 22 6 4.7131 0.6279 8.6557 23 8 3.5779 2.6242 8.1116 24 6 1.8559 1.6379 4.8716 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 3.6752 3.5168 -4.4437 33 1 0.9446 1.0115 2.5302 34 1 2.6229 0.4188 2.5298 35 1 4.0914 1.0159 3.8196 36 1 4.3713 2.8090 3.7660 37 1 3.1348 3.1517 5.8655 38 1 5.2205 -0.1552 5.7117 39 1 3.9971 -0.8694 6.7892 40 1 3.5656 -0.4330 5.1184 41 1 5.0791 -0.2376 8.1033 42 1 5.5552 1.1562 9.1029 43 1 4.0333 0.2969 9.4408 44 1 0.9737 2.1325 5.2778 45 1 1.7616 0.5520 4.8563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754569045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:59 Heat of formation + Delta-G solvation = -46.521562 kcal Electronic energy + Delta-G solvation = -24664.504099 eV Core-core repulsion = 21103.856033 eV Total energy + Delta-G solvation = -3560.648066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00294 -40.60399 -39.69816 -36.89274 -36.10743 -34.92050 -32.24128 -31.51604 -30.31961 -28.94429 -27.92539 -27.02270 -25.97218 -24.56374 -23.77047 -21.38088 -20.27412 -19.73731 -18.63096 -18.32552 -17.95827 -17.58972 -17.01876 -16.95694 -16.40583 -16.15453 -15.97379 -15.27487 -14.98005 -14.65006 -14.52417 -14.31645 -14.05148 -13.91909 -13.71165 -13.53979 -13.49997 -13.26753 -13.11683 -13.05022 -12.87234 -12.74050 -12.65564 -12.48672 -12.16624 -12.06508 -11.97917 -11.81254 -11.70985 -10.92964 -10.64737 -10.59133 -9.85765 -9.68847 -9.40633 -8.22375 -6.37695 1.35225 1.39002 1.48889 1.55114 1.88165 1.89608 2.27702 2.42372 3.05934 3.07571 3.35502 3.61572 3.71000 3.82232 4.00064 4.07417 4.13316 4.24649 4.27723 4.36503 4.45652 4.46958 4.57186 4.64608 4.65711 4.71157 4.75511 4.89705 4.93658 4.95954 5.00344 5.05883 5.11808 5.22327 5.23179 5.40078 5.42630 5.58418 5.83778 5.93388 6.06977 6.38412 6.71151 6.85149 7.12815 7.29180 7.56691 8.84769 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003356 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.140834 B = 8340.104346 C = 9041.155587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.495 3.505 14 O -0.586 6.586 15 C 0.020 3.980 16 N -0.481 5.481 17 C -0.004 4.004 18 C 0.122 3.878 19 N -0.604 5.604 20 C 0.062 3.938 21 C 0.503 3.497 22 C -0.167 4.167 23 O -0.602 6.602 24 C 0.000 4.000 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.020 0.980 31 H -0.010 1.010 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -17.135 21.049 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.283 3.717 14 O -0.465 6.465 15 C -0.111 4.111 16 N -0.204 5.204 17 C -0.134 4.134 18 C 0.017 3.983 19 N -0.336 5.336 20 C -0.079 4.079 21 C 0.294 3.706 22 C -0.225 4.225 23 O -0.483 6.483 24 C -0.129 4.129 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.038 0.962 31 H 0.008 0.992 32 H 0.075 0.925 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.021 -15.279 20.814 25.840 hybrid contribution 0.930 0.027 -0.961 1.338 sum -0.091 -15.252 19.853 25.035 Atomic orbital electron populations 1.22168 0.94791 1.03519 1.01537 1.21754 0.95149 0.81232 1.04045 1.48310 1.64318 1.15204 1.06051 1.18653 0.95307 0.91294 0.80589 1.21713 0.97833 1.31901 1.06441 0.92684 1.25906 1.02524 0.94463 0.96514 1.70062 1.37906 1.34297 1.14814 0.85390 0.78831 0.78194 0.78236 1.18565 1.20892 1.19631 1.21216 0.77440 0.86672 0.86335 1.90648 1.47284 1.20704 1.87875 1.22629 1.05129 0.94661 0.88686 1.68703 1.07362 1.42597 1.01728 1.24396 0.92863 1.02540 0.93581 1.22355 0.93727 0.94752 0.87502 1.48009 1.60858 1.15626 1.09103 1.22198 1.01693 0.81290 1.02719 1.21778 0.78504 0.87388 0.82925 1.22007 1.01674 0.99793 0.99067 1.90706 1.53432 1.27087 1.77118 1.24357 0.98705 1.01085 0.88762 0.92215 0.94668 0.88386 0.91009 0.87780 0.96174 0.99178 0.92462 0.85594 0.87944 0.88157 0.91956 0.88305 0.90993 0.87574 0.89830 0.87093 0.88456 0.87489 0.89215 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.85 5.93 86.38 0.51 3.37 16 3 N -0.61 -25.50 2.46 -826.15 -2.03 -27.52 16 4 C 0.26 14.48 5.16 85.63 0.44 14.92 16 5 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.50 20.79 7.74 87.65 0.68 21.46 16 14 O -0.59 -31.98 16.01 -3.03 -0.05 -32.03 16 15 C 0.02 0.54 3.85 85.56 0.33 0.86 16 16 N -0.48 -13.71 5.82 -932.53 -5.43 -19.14 16 17 C 0.00 -0.11 7.11 83.57 0.59 0.49 16 18 C 0.12 2.77 4.52 45.45 0.21 2.97 16 19 N -0.60 -9.99 3.11 -821.60 -2.56 -12.55 16 20 C 0.06 0.43 8.44 127.77 1.08 1.51 16 21 C 0.50 9.90 7.77 87.66 0.68 10.58 16 22 C -0.17 -1.46 9.90 71.24 0.70 -0.75 16 23 O -0.60 -18.60 16.64 -3.02 -0.05 -18.65 16 24 C 0.00 0.00 7.23 83.58 0.60 0.61 16 25 H 0.06 1.29 7.22 -2.38 -0.02 1.27 16 26 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.10 2.06 6.44 -2.38 -0.02 2.04 16 30 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 31 H -0.01 -0.64 7.42 -2.38 -0.02 -0.66 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.13 2.61 7.12 -2.39 -0.02 2.60 16 34 H 0.10 1.99 6.56 -2.39 -0.02 1.97 16 35 H 0.10 1.93 5.72 -2.39 -0.01 1.92 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 2.92 7.34 -2.39 -0.02 2.90 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.11 0.14 6.63 -2.38 -0.02 0.12 16 40 H 0.08 0.46 5.99 -2.39 -0.01 0.45 16 41 H 0.11 0.27 5.82 -2.38 -0.01 0.26 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.11 1.33 6.81 -2.38 -0.02 1.31 16 Total: -1.00 -88.90 363.26 0.45 -88.45 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.98 Total: 8.83 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.27 Total: 22.56 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -9.73 Total: -116.30 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.10 Total: -50.68 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -88.90 0.45 -88.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754569045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.929 kcal (2) G-P(sol) polarization free energy of solvation -88.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds