Wall clock time and date at job start Tue Mar 31 2020 03:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48557 * 111.00300 * 2 1 4 4 C 1.54378 * 104.59677 * 200.96123 * 3 2 1 5 5 C 1.54258 * 105.05805 * 23.85213 * 4 3 2 6 6 C 1.48558 * 110.99749 * 244.58174 * 2 1 3 7 7 H 1.09001 * 110.51244 * 40.21560 * 6 2 1 8 8 C 1.50698 * 110.41460 * 277.82148 * 6 2 1 9 9 O 1.21285 * 119.99965 * 344.82579 * 8 6 2 10 10 N 1.34773 * 120.00391 * 164.82481 * 8 6 2 11 11 C 1.46506 * 120.00078 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46703 * 180.02562 * 11 10 8 13 13 O 1.42900 * 110.78051 * 61.76812 * 12 11 10 14 14 C 1.55161 * 110.71825 * 184.99988 * 12 11 10 15 15 C 1.54903 * 101.58272 * 153.86426 * 14 12 11 16 16 N 1.47428 * 104.83505 * 322.99377 * 15 14 12 17 17 C 1.36939 * 125.65061 * 204.09094 * 16 15 14 18 18 H 1.07997 * 119.99773 * 168.10139 * 17 16 15 19 19 C 1.38811 * 119.99509 * 348.09565 * 17 16 15 20 20 N 1.31613 * 120.00608 * 325.97825 * 19 17 16 21 21 Si 1.86806 * 119.99274 * 145.97884 * 19 17 16 22 22 H 1.48495 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47063 * 239.99759 * 21 19 17 24 24 H 1.48501 * 109.46672 * 120.00021 * 21 19 17 25 25 C 1.47029 * 108.69861 * 24.35538 * 16 15 14 26 26 H 1.08996 * 109.47559 * 175.41744 * 1 2 3 27 27 H 1.08998 * 109.46730 * 295.41796 * 1 2 3 28 28 H 1.09004 * 109.46653 * 55.41528 * 1 2 3 29 29 H 1.09007 * 110.40851 * 82.17841 * 3 2 1 30 30 H 1.08995 * 110.41401 * 319.74102 * 3 2 1 31 31 H 1.08997 * 110.32338 * 264.95874 * 4 3 2 32 32 H 1.09001 * 110.41090 * 142.79476 * 4 3 2 33 33 H 1.08999 * 110.32687 * 241.10083 * 5 4 3 34 34 H 1.09002 * 110.40758 * 118.94084 * 5 4 3 35 35 H 0.97003 * 120.00000 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.47037 * 60.00631 * 11 10 8 37 37 H 1.08995 * 109.47447 * 300.00192 * 11 10 8 38 38 H 0.96704 * 113.99601 * 303.23384 * 13 12 11 39 39 H 1.09001 * 110.99982 * 35.79493 * 14 12 11 40 40 H 1.08994 * 111.03804 * 271.95974 * 14 12 11 41 41 H 1.08994 * 110.37024 * 204.15487 * 15 14 12 42 42 H 1.09003 * 110.36525 * 81.82855 * 15 14 12 43 43 H 0.96997 * 119.99747 * 354.25193 * 20 19 17 44 44 H 1.09003 * 109.87931 * 118.13413 * 25 16 15 45 45 H 1.09003 * 109.87603 * 239.29537 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4434 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3585 6 6 2.0014 -0.5953 -1.2527 7 1 1.4104 -0.2729 -2.1100 8 6 2.0103 -2.0993 -1.1576 9 8 1.8828 -2.6394 -0.0792 10 7 2.1599 -2.8441 -2.2708 11 6 2.1691 -4.3062 -2.1781 12 6 2.3526 -4.9044 -3.5744 13 8 3.6039 -4.5044 -4.1369 14 6 2.2414 -6.4513 -3.5277 15 6 1.7721 -6.7730 -4.9685 16 7 0.8530 -5.6752 -5.3201 17 6 -0.1439 -5.7379 -6.2568 18 1 -0.8847 -4.9539 -6.3103 19 6 -0.2020 -6.8092 -7.1377 20 7 0.9090 -7.3689 -7.5675 21 14 -1.8572 -7.4563 -7.7131 22 1 -2.9442 -6.6607 -7.0882 23 1 -1.9966 -8.8807 -7.3170 24 1 -1.9465 -7.3425 -9.1910 25 6 1.1881 -4.4998 -4.5028 26 1 -0.3634 -1.0243 -0.0821 27 1 -0.3633 0.4411 0.9282 28 1 -0.3633 0.5834 -0.8461 29 1 2.0080 1.7916 1.0121 30 1 1.4100 2.0212 -0.6601 31 1 4.1484 1.1747 0.2934 32 1 3.6956 2.0993 -1.1695 33 1 4.1483 -0.7694 -0.9352 34 1 3.6943 0.1537 -2.3987 35 1 2.2622 -2.4121 -3.1332 36 1 1.2243 -4.6495 -1.7567 37 1 2.9904 -4.6244 -1.5361 38 1 3.7234 -3.5461 -4.1886 39 1 1.4987 -6.7676 -2.7952 40 1 3.2096 -6.9072 -3.3212 41 1 1.2484 -7.7285 -4.9925 42 1 2.6227 -6.7884 -5.6499 43 1 1.7679 -6.9822 -7.3360 44 1 1.4942 -3.6755 -5.1470 45 1 0.3252 -4.2056 -3.9053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754750479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:42 Heat of formation + Delta-G solvation = -50.187368 kcal Electronic energy + Delta-G solvation = -25030.648596 eV Core-core repulsion = 21469.841569 eV Total energy + Delta-G solvation = -3560.807027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44505 -39.07838 -37.84914 -35.37541 -34.21259 -32.54594 -32.27071 -30.29516 -29.36480 -28.15455 -26.01672 -25.50094 -23.83151 -22.29099 -21.32068 -20.65662 -20.08130 -19.93486 -17.93236 -17.47968 -16.74743 -16.15100 -15.92150 -15.26808 -14.85501 -14.65683 -14.42008 -14.17787 -14.08414 -13.81038 -13.55067 -13.27881 -13.15130 -12.88232 -12.73325 -12.36148 -12.24280 -11.85054 -11.83612 -11.75273 -11.42608 -11.05511 -11.01230 -10.77688 -10.63975 -10.48494 -10.39268 -10.07411 -9.83738 -9.72545 -9.56098 -9.12631 -8.79817 -8.35334 -7.00052 -6.17694 -3.11232 2.56144 2.89891 3.51435 3.54382 3.68338 3.77633 4.22899 4.25470 4.32523 4.51639 4.57027 4.71666 4.79411 4.85275 5.04821 5.06473 5.10801 5.17160 5.19980 5.24880 5.28977 5.41450 5.50205 5.51852 5.66101 5.70613 5.73519 5.77946 5.84583 5.98840 6.17384 6.25521 6.30943 6.38467 6.43011 6.47258 6.61934 6.94335 7.07142 7.39198 7.74890 7.79266 8.18648 8.45691 8.97795 9.79087 10.33997 11.17093 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.003293 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.371636 B = 8501.347758 C = 8974.516457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.490 5.490 3 C 0.031 3.969 4 C -0.122 4.122 5 C -0.113 4.113 6 C 0.041 3.959 7 H 0.075 0.925 8 C 0.522 3.478 9 O -0.517 6.517 10 N -0.730 5.730 11 C 0.107 3.893 12 C 0.106 3.894 13 O -0.543 6.543 14 C -0.119 4.119 15 C 0.148 3.852 16 N -0.598 5.598 17 C -0.347 4.347 18 H 0.066 0.934 19 C -0.021 4.021 20 N -0.907 5.907 21 Si 1.061 2.939 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.295 1.295 25 C 0.118 3.882 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.366 0.634 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.270 0.730 44 H 0.023 0.977 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 16.751 13.121 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.214 5.214 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.071 4.071 7 H 0.093 0.907 8 C 0.307 3.693 9 O -0.391 6.391 10 N -0.383 5.383 11 C -0.017 4.017 12 C 0.064 3.936 13 O -0.348 6.348 14 C -0.158 4.158 15 C 0.023 3.977 16 N -0.325 5.325 17 C -0.474 4.474 18 H 0.084 0.916 19 C -0.223 4.223 20 N -0.547 5.547 21 Si 0.891 3.109 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.222 1.222 25 C -0.009 4.009 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.212 0.788 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.876 14.206 13.398 19.908 hybrid contribution 0.292 2.563 -0.326 2.600 sum 4.168 16.769 13.072 21.667 Atomic orbital electron populations 1.22550 0.87215 1.02605 1.01117 1.65083 1.08696 1.14696 1.32965 1.23174 0.95193 0.89630 1.01652 1.22283 0.96812 0.97100 0.99855 1.22247 0.94203 0.97623 1.01070 1.22665 0.98135 0.92621 0.93676 0.90739 1.20228 0.76477 0.88595 0.84033 1.90709 1.47417 1.73423 1.27586 1.45996 1.75211 1.07307 1.09825 1.22017 1.03072 0.78924 0.97699 1.22531 0.84394 0.96721 0.89913 1.86627 1.36571 1.26690 1.84883 1.22819 1.01508 0.91106 1.00326 1.21500 0.93080 0.92689 0.90472 1.44534 1.37868 1.06447 1.43686 1.19701 1.03291 1.11493 1.12938 0.91586 1.25669 1.04116 0.97412 0.95125 1.70716 0.98712 1.45547 1.39683 0.83619 0.75246 0.76387 0.75640 1.21831 1.21572 1.22244 1.21919 0.94135 0.91879 0.92937 0.90916 0.90774 0.95245 0.89593 0.93539 0.90580 0.90845 0.90339 0.90233 0.76886 0.90311 0.90679 0.78801 0.90096 0.90538 0.92763 0.95236 0.91858 0.95873 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.44 60.07 0.57 0.70 16 2 N -0.49 -5.30 4.92 -231.72 -1.14 -6.44 16 3 C 0.03 0.24 6.49 -2.18 -0.01 0.23 16 4 C -0.12 -0.84 7.00 -25.35 -0.18 -1.02 16 5 C -0.11 -0.90 6.54 -25.35 -0.17 -1.07 16 6 C 0.04 0.42 2.68 -67.23 -0.18 0.24 16 7 H 0.07 0.66 7.97 -51.93 -0.41 0.24 16 8 C 0.52 6.88 6.72 -10.99 -0.07 6.81 16 9 O -0.52 -8.94 16.56 5.55 0.09 -8.85 16 10 N -0.73 -8.77 5.13 -60.29 -0.31 -9.08 16 11 C 0.11 1.52 4.74 -4.04 -0.02 1.50 16 12 C 0.11 1.75 0.93 -88.78 -0.08 1.66 16 13 O -0.54 -8.71 13.10 -35.23 -0.46 -9.17 16 14 C -0.12 -2.16 6.26 -24.58 -0.15 -2.31 16 15 C 0.15 3.48 5.33 -2.53 -0.01 3.47 16 16 N -0.60 -15.13 3.33 -170.07 -0.57 -15.69 16 17 C -0.35 -9.83 9.97 -15.06 -0.15 -9.98 16 18 H 0.07 1.87 8.02 -52.49 -0.42 1.45 16 19 C -0.02 -0.59 4.95 -17.43 -0.09 -0.68 16 20 N -0.91 -27.48 12.87 55.49 0.71 -26.76 16 21 Si 1.06 25.41 30.03 -169.99 -5.10 20.31 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.12 2.35 6.04 -3.06 -0.02 2.33 16 26 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.25 7.98 -51.93 -0.41 -0.17 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.32 7.90 -51.93 -0.41 -0.09 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 3.92 7.38 -40.82 -0.30 3.62 16 36 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.37 4.30 8.06 45.56 0.37 4.66 16 39 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 1.38 7.82 -51.93 -0.41 0.97 16 42 H 0.03 0.76 7.03 -51.93 -0.36 0.39 16 43 H 0.27 8.29 6.45 -40.82 -0.26 8.02 16 44 H 0.02 0.46 8.07 -51.93 -0.42 0.05 16 45 H 0.03 0.64 7.82 -51.93 -0.41 0.23 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -34.99 357.79 -8.82 -43.81 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.87 Total: 4.59 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.57 Total: 1.89 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -1.30 Total: -57.97 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.37 Total: -18.02 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.10 Total: 20.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.99 -8.82 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754750479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.376 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds