Wall clock time and date at job start Tue Mar 31 2020 03:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48557 * 111.00300 * 2 1 4 4 C 1.54378 * 104.59677 * 200.96123 * 3 2 1 5 5 C 1.54258 * 105.05805 * 23.85213 * 4 3 2 6 6 C 1.48558 * 110.99749 * 244.58174 * 2 1 3 7 7 H 1.09001 * 110.51244 * 40.21560 * 6 2 1 8 8 C 1.50698 * 110.41460 * 277.82148 * 6 2 1 9 9 O 1.21285 * 119.99965 * 344.82579 * 8 6 2 10 10 N 1.34773 * 120.00391 * 164.82481 * 8 6 2 11 11 C 1.46506 * 120.00078 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46703 * 180.02562 * 11 10 8 13 13 O 1.42900 * 110.78051 * 61.76812 * 12 11 10 14 14 C 1.55161 * 110.71825 * 184.99988 * 12 11 10 15 15 C 1.54903 * 101.58272 * 153.86426 * 14 12 11 16 16 N 1.47428 * 104.83505 * 322.99377 * 15 14 12 17 17 C 1.36939 * 125.65061 * 204.09094 * 16 15 14 18 18 H 1.07997 * 119.99773 * 168.10139 * 17 16 15 19 19 C 1.38811 * 119.99509 * 348.09565 * 17 16 15 20 20 N 1.31613 * 120.00608 * 325.97825 * 19 17 16 21 21 Si 1.86806 * 119.99274 * 145.97884 * 19 17 16 22 22 H 1.48495 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47063 * 239.99759 * 21 19 17 24 24 H 1.48501 * 109.46672 * 120.00021 * 21 19 17 25 25 C 1.47029 * 108.69861 * 24.35538 * 16 15 14 26 26 H 1.08996 * 109.47559 * 175.41744 * 1 2 3 27 27 H 1.08998 * 109.46730 * 295.41796 * 1 2 3 28 28 H 1.09004 * 109.46653 * 55.41528 * 1 2 3 29 29 H 1.09007 * 110.40851 * 82.17841 * 3 2 1 30 30 H 1.08995 * 110.41401 * 319.74102 * 3 2 1 31 31 H 1.08997 * 110.32338 * 264.95874 * 4 3 2 32 32 H 1.09001 * 110.41090 * 142.79476 * 4 3 2 33 33 H 1.08999 * 110.32687 * 241.10083 * 5 4 3 34 34 H 1.09002 * 110.40758 * 118.94084 * 5 4 3 35 35 H 0.97003 * 120.00000 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.47037 * 60.00631 * 11 10 8 37 37 H 1.08995 * 109.47447 * 300.00192 * 11 10 8 38 38 H 0.96704 * 113.99601 * 303.23384 * 13 12 11 39 39 H 1.09001 * 110.99982 * 35.79493 * 14 12 11 40 40 H 1.08994 * 111.03804 * 271.95974 * 14 12 11 41 41 H 1.08994 * 110.37024 * 204.15487 * 15 14 12 42 42 H 1.09003 * 110.36525 * 81.82855 * 15 14 12 43 43 H 0.96997 * 119.99747 * 354.25193 * 20 19 17 44 44 H 1.09003 * 109.87931 * 118.13413 * 25 16 15 45 45 H 1.09003 * 109.87603 * 239.29537 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4434 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3585 6 6 2.0014 -0.5953 -1.2527 7 1 1.4104 -0.2729 -2.1100 8 6 2.0103 -2.0993 -1.1576 9 8 1.8828 -2.6394 -0.0792 10 7 2.1599 -2.8441 -2.2708 11 6 2.1691 -4.3062 -2.1781 12 6 2.3526 -4.9044 -3.5744 13 8 3.6039 -4.5044 -4.1369 14 6 2.2414 -6.4513 -3.5277 15 6 1.7721 -6.7730 -4.9685 16 7 0.8530 -5.6752 -5.3201 17 6 -0.1439 -5.7379 -6.2568 18 1 -0.8847 -4.9539 -6.3103 19 6 -0.2020 -6.8092 -7.1377 20 7 0.9090 -7.3689 -7.5675 21 14 -1.8572 -7.4563 -7.7131 22 1 -2.9442 -6.6607 -7.0882 23 1 -1.9966 -8.8807 -7.3170 24 1 -1.9465 -7.3425 -9.1910 25 6 1.1881 -4.4998 -4.5028 26 1 -0.3634 -1.0243 -0.0821 27 1 -0.3633 0.4411 0.9282 28 1 -0.3633 0.5834 -0.8461 29 1 2.0080 1.7916 1.0121 30 1 1.4100 2.0212 -0.6601 31 1 4.1484 1.1747 0.2934 32 1 3.6956 2.0993 -1.1695 33 1 4.1483 -0.7694 -0.9352 34 1 3.6943 0.1537 -2.3987 35 1 2.2622 -2.4121 -3.1332 36 1 1.2243 -4.6495 -1.7567 37 1 2.9904 -4.6244 -1.5361 38 1 3.7234 -3.5461 -4.1886 39 1 1.4987 -6.7676 -2.7952 40 1 3.2096 -6.9072 -3.3212 41 1 1.2484 -7.7285 -4.9925 42 1 2.6227 -6.7884 -5.6499 43 1 1.7679 -6.9822 -7.3360 44 1 1.4942 -3.6755 -5.1470 45 1 0.3252 -4.2056 -3.9053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754750479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:41 Heat of formation + Delta-G solvation = -78.853637 kcal Electronic energy + Delta-G solvation = -25031.891658 eV Core-core repulsion = 21469.841569 eV Total energy + Delta-G solvation = -3562.050090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44935 -40.36633 -38.84620 -37.04059 -35.37295 -34.19252 -33.17816 -31.54536 -30.82637 -29.49286 -27.25367 -26.65533 -25.46884 -23.31147 -22.29012 -21.90635 -21.48272 -21.10221 -19.58012 -18.87998 -17.88392 -17.14984 -16.81561 -16.54517 -16.26408 -15.85974 -15.62919 -15.59076 -15.24180 -15.08681 -14.78072 -14.72798 -14.63832 -14.22782 -13.66009 -13.40148 -13.35747 -12.99585 -12.76446 -12.62904 -12.55010 -12.53194 -12.38399 -12.27855 -12.06901 -11.93178 -11.88698 -11.70075 -11.55548 -11.10780 -10.83059 -10.47683 -10.22733 -9.51031 -9.07924 -8.42044 -5.31115 1.55819 1.57038 1.64259 1.81629 1.92848 2.60862 3.01152 3.04438 3.14335 3.28888 3.50133 3.57999 3.59110 3.73403 3.79065 3.95325 4.02239 4.22908 4.34430 4.36161 4.38377 4.43304 4.53676 4.58820 4.67271 4.71503 4.77951 4.82884 4.87063 4.91924 4.93022 5.00703 5.04730 5.10059 5.22851 5.23287 5.27089 5.63467 5.71531 5.94515 6.26034 6.43595 6.68266 6.83699 7.18478 7.67013 8.25325 8.92406 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.003293 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.371636 B = 8501.347758 C = 8974.516457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.031 3.969 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.043 3.957 7 H 0.093 0.907 8 C 0.522 3.478 9 O -0.563 6.563 10 N -0.719 5.719 11 C 0.121 3.879 12 C 0.128 3.872 13 O -0.553 6.553 14 C -0.111 4.111 15 C 0.152 3.848 16 N -0.622 5.622 17 C -0.356 4.356 18 H 0.062 0.938 19 C -0.074 4.074 20 N -0.935 5.935 21 Si 1.114 2.886 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.290 1.290 25 C 0.115 3.885 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.386 0.614 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.023 0.977 42 H 0.002 0.998 43 H 0.255 0.745 44 H 0.029 0.971 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.570 18.792 13.663 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.096 4.096 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.069 4.069 7 H 0.110 0.890 8 C 0.308 3.692 9 O -0.440 6.440 10 N -0.373 5.373 11 C -0.003 4.003 12 C 0.086 3.914 13 O -0.361 6.361 14 C -0.149 4.149 15 C 0.026 3.974 16 N -0.349 5.349 17 C -0.484 4.484 18 H 0.080 0.920 19 C -0.271 4.271 20 N -0.577 5.577 21 Si 0.939 3.061 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.217 1.217 25 C -0.011 4.011 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.020 0.980 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.883 16.310 13.938 21.803 hybrid contribution 0.328 1.999 -0.475 2.081 sum 4.211 18.309 13.463 23.113 Atomic orbital electron populations 1.22500 0.87179 1.01333 1.02215 1.65041 1.09068 1.16675 1.33639 1.23247 0.95783 0.88222 1.02363 1.22308 0.96115 0.97299 0.99982 1.22300 0.92234 0.97640 1.02748 1.22717 0.99900 0.90110 0.94198 0.88978 1.20843 0.75073 0.89987 0.83275 1.90688 1.49574 1.74486 1.29280 1.45871 1.74669 1.06359 1.10441 1.21711 1.02776 0.80162 0.95682 1.22176 0.83417 0.95569 0.90249 1.86599 1.35755 1.28833 1.84900 1.22756 1.02701 0.92669 0.96800 1.21360 0.91487 0.91238 0.93315 1.44801 1.37796 1.08837 1.43463 1.19966 1.03926 1.11406 1.13069 0.91995 1.27061 1.06403 0.97919 0.95698 1.70845 0.98664 1.46465 1.41693 0.82908 0.71732 0.75978 0.75531 1.19766 1.21392 1.21706 1.22104 0.95732 0.90317 0.92915 0.93384 0.90010 0.93759 0.89304 0.92144 0.90902 0.88539 0.91825 0.87715 0.75384 0.91235 0.90211 0.76452 0.88656 0.88653 0.95824 0.97999 0.93554 0.95349 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.44 127.69 1.21 1.51 16 2 N -0.52 -10.39 4.92 -887.03 -4.36 -14.75 16 3 C 0.03 0.41 6.49 86.45 0.56 0.97 16 4 C -0.12 -1.29 7.00 31.49 0.22 -1.07 16 5 C -0.11 -1.47 6.54 31.49 0.21 -1.26 16 6 C 0.04 0.77 2.68 44.32 0.12 0.89 16 7 H 0.09 1.34 7.97 -2.39 -0.02 1.32 16 8 C 0.52 13.03 6.72 87.66 0.59 13.62 16 9 O -0.56 -19.24 16.56 -3.05 -0.05 -19.29 16 10 N -0.72 -15.83 5.13 -463.05 -2.37 -18.20 16 11 C 0.12 3.24 4.74 86.38 0.41 3.64 16 12 C 0.13 4.01 0.93 -9.60 -0.01 4.00 16 13 O -0.55 -16.59 13.10 -148.98 -1.95 -18.54 16 14 C -0.11 -3.92 6.26 31.99 0.20 -3.72 16 15 C 0.15 7.29 5.33 86.85 0.46 7.75 16 16 N -0.62 -31.71 3.33 -691.97 -2.30 -34.01 16 17 C -0.36 -20.32 9.97 84.03 0.84 -19.48 16 18 H 0.06 3.51 8.02 -2.91 -0.02 3.48 16 19 C -0.07 -4.29 4.95 84.86 0.42 -3.87 16 20 N -0.94 -58.18 12.87 21.65 0.28 -57.90 16 21 Si 1.11 51.56 30.03 68.60 2.06 53.62 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 C 0.11 4.47 6.04 86.73 0.52 4.99 16 26 H 0.05 1.11 7.96 -2.39 -0.02 1.09 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 0.66 7.98 -2.39 -0.02 0.64 16 29 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 0.63 7.90 -2.39 -0.02 0.61 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 1.04 7.85 -2.39 -0.02 1.03 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.41 6.98 7.38 -92.71 -0.68 6.29 16 36 H 0.07 2.03 8.13 -2.39 -0.02 2.02 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.39 7.98 8.06 -74.05 -0.60 7.39 16 39 H 0.10 3.10 8.04 -2.39 -0.02 3.08 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.02 1.25 7.82 -2.39 -0.02 1.23 16 42 H 0.00 0.12 7.03 -2.39 -0.02 0.10 16 43 H 0.25 16.24 6.45 -92.71 -0.60 15.64 16 44 H 0.03 1.09 8.07 -2.39 -0.02 1.07 16 45 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 Total: -1.00 -77.64 357.79 -3.08 -80.72 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.12 Total: 20.40 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.75 Total: 7.96 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -8.76 Total: -124.87 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -2.00 Total: -37.83 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.06 Total: 53.62 kcal Total: -77.64 -3.08 -80.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754750479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.867 kcal (2) G-P(sol) polarization free energy of solvation -77.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds