Wall clock time and date at job start Tue Mar 31 2020 03:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48559 * 111.00063 * 2 1 4 4 C 1.54375 * 104.59488 * 200.95970 * 3 2 1 5 5 C 1.54258 * 105.06267 * 23.85682 * 4 3 2 6 6 C 1.48568 * 110.99638 * 244.58208 * 2 1 3 7 7 H 1.08993 * 110.51465 * 40.21694 * 6 2 1 8 8 C 1.50695 * 110.41511 * 277.81674 * 6 2 1 9 9 O 1.21286 * 119.99596 * 344.83022 * 8 6 2 10 10 N 1.34766 * 120.00492 * 164.82877 * 8 6 2 11 11 C 1.46493 * 120.00526 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47423 * 179.97438 * 11 10 8 13 13 O 1.42897 * 110.64310 * 298.31491 * 12 11 10 14 14 C 1.55157 * 110.72409 * 174.97553 * 12 11 10 15 15 C 1.55127 * 101.49189 * 205.97241 * 14 12 11 16 16 N 1.47427 * 104.71790 * 37.29648 * 15 14 12 17 17 C 1.36942 * 125.64570 * 155.81805 * 16 15 14 18 18 H 1.07993 * 119.99748 * 196.01564 * 17 16 15 19 19 C 1.38814 * 119.99909 * 16.02045 * 17 16 15 20 20 N 1.31614 * 119.99615 * 201.19526 * 19 17 16 21 21 Si 1.86794 * 120.00045 * 21.19658 * 19 17 16 22 22 H 1.48500 * 109.47126 * 275.67470 * 21 19 17 23 23 H 1.48500 * 109.47392 * 35.67395 * 21 19 17 24 24 H 1.48501 * 109.47066 * 155.67393 * 21 19 17 25 25 C 1.47023 * 108.70338 * 335.55334 * 16 15 14 26 26 H 1.09000 * 109.47087 * 175.41283 * 1 2 3 27 27 H 1.08997 * 109.46887 * 295.41594 * 1 2 3 28 28 H 1.08996 * 109.47061 * 55.41810 * 1 2 3 29 29 H 1.09003 * 110.41111 * 82.18493 * 3 2 1 30 30 H 1.08999 * 110.51571 * 319.79051 * 3 2 1 31 31 H 1.08999 * 110.32509 * 264.95898 * 4 3 2 32 32 H 1.09000 * 110.40889 * 142.79699 * 4 3 2 33 33 H 1.09003 * 110.32524 * 241.10539 * 5 4 3 34 34 H 1.09002 * 110.41307 * 118.93912 * 5 4 3 35 35 H 0.97005 * 119.99589 * 0.02562 * 10 8 6 36 36 H 1.09005 * 109.47145 * 60.00281 * 11 10 8 37 37 H 1.08998 * 109.47414 * 300.00264 * 11 10 8 38 38 H 0.96702 * 113.99733 * 61.68828 * 13 12 11 39 39 H 1.09004 * 111.00314 * 324.21791 * 14 12 11 40 40 H 1.09007 * 111.00338 * 88.02322 * 14 12 11 41 41 H 1.08995 * 110.49589 * 278.45403 * 15 14 12 42 42 H 1.08999 * 110.34197 * 156.05693 * 15 14 12 43 43 H 0.97003 * 119.99617 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.87848 * 120.71062 * 25 16 15 45 45 H 1.08997 * 109.88156 * 241.71531 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0538 -1.3586 6 6 2.0014 -0.5953 -1.2528 7 1 1.4105 -0.2730 -2.1100 8 6 2.0104 -2.0993 -1.1576 9 8 1.8829 -2.6394 -0.0792 10 7 2.1600 -2.8441 -2.2707 11 6 2.1682 -4.3061 -2.1783 12 6 2.3508 -4.9044 -3.5746 13 8 1.2658 -4.5335 -4.4274 14 6 2.4900 -6.4477 -3.4967 15 6 3.3058 -6.7497 -4.7811 16 7 4.2549 -5.6273 -4.8945 17 6 5.4532 -5.6593 -5.5567 18 1 6.1912 -4.8921 -5.3748 19 6 5.7191 -6.6777 -6.4617 20 7 6.9630 -6.9663 -6.7807 21 14 4.3116 -7.6383 -7.2268 22 1 3.9038 -8.7333 -6.3102 23 1 3.1594 -6.7301 -7.4563 24 1 4.7527 -8.2155 -8.5220 25 6 3.6990 -4.4662 -4.1843 26 1 -0.3633 -1.0244 -0.0822 27 1 -0.3633 0.4411 0.9282 28 1 -0.3633 0.5833 -0.8461 29 1 2.0080 1.7916 1.0121 30 1 1.4105 2.0229 -0.6590 31 1 4.1483 1.1747 0.2934 32 1 3.6954 2.0993 -1.1695 33 1 4.1483 -0.7693 -0.9352 34 1 3.6943 0.1538 -2.3987 35 1 2.2623 -2.4120 -3.1332 36 1 1.2230 -4.6488 -1.7574 37 1 2.9890 -4.6249 -1.5359 38 1 1.1848 -3.5803 -4.5688 39 1 3.0378 -6.7460 -2.6027 40 1 1.5133 -6.9305 -3.5330 41 1 2.6500 -6.7813 -5.6511 42 1 3.8434 -7.6920 -4.6757 43 1 7.1488 -7.6782 -7.4128 44 1 4.3804 -4.1550 -3.3925 45 1 3.5429 -3.6443 -4.8830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754750480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:44 Heat of formation + Delta-G solvation = -42.176504 kcal Electronic energy + Delta-G solvation = -25094.718761 eV Core-core repulsion = 21534.259111 eV Total energy + Delta-G solvation = -3560.459650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45413 -39.16370 -37.87951 -35.42245 -34.24880 -32.52628 -32.24668 -30.51725 -29.65205 -28.39696 -26.18375 -25.85832 -23.67846 -22.23374 -21.29157 -21.17388 -20.13269 -20.06754 -17.90250 -17.10636 -16.59440 -16.17195 -15.94231 -15.36620 -15.13313 -14.78260 -14.51385 -14.39756 -14.10347 -14.04417 -13.56820 -13.45562 -13.05785 -12.79245 -12.65934 -12.27280 -12.17567 -11.97141 -11.82252 -11.73162 -11.66066 -11.41493 -11.21536 -11.08812 -10.96623 -10.74443 -10.13808 -10.05154 -9.83655 -9.70456 -9.40816 -9.13854 -8.80550 -8.76025 -7.09955 -5.96126 -3.27379 2.56294 2.88256 3.34006 3.48353 3.51185 3.77142 4.21965 4.26902 4.28601 4.52822 4.56583 4.61043 4.77461 4.82856 4.95399 5.05415 5.05916 5.08195 5.13422 5.18155 5.29736 5.40236 5.45692 5.56657 5.62531 5.63198 5.74581 5.77441 5.82413 5.85532 6.03023 6.14982 6.25845 6.34791 6.36771 6.41468 6.58996 6.61368 6.72548 7.38132 7.63066 7.72231 8.18112 8.27812 8.78768 9.65740 10.12255 11.19728 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026808 B = 0.003458 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.226579 B = 8096.111386 C = 8699.958118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.490 5.490 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.114 4.114 6 C 0.042 3.958 7 H 0.074 0.926 8 C 0.522 3.478 9 O -0.517 6.517 10 N -0.730 5.730 11 C 0.107 3.893 12 C 0.104 3.896 13 O -0.545 6.545 14 C -0.113 4.113 15 C 0.109 3.891 16 N -0.606 5.606 17 C -0.244 4.244 18 H 0.093 0.907 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 0.886 3.114 22 H -0.285 1.285 23 H -0.274 1.274 24 H -0.303 1.303 25 C 0.116 3.884 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.397 0.603 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.368 0.632 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.264 0.736 44 H 0.042 0.958 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 15.952 10.958 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.214 5.214 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.153 4.153 6 C -0.070 4.070 7 H 0.091 0.909 8 C 0.307 3.693 9 O -0.391 6.391 10 N -0.383 5.383 11 C -0.017 4.017 12 C 0.063 3.937 13 O -0.349 6.349 14 C -0.152 4.152 15 C -0.016 4.016 16 N -0.333 5.333 17 C -0.371 4.371 18 H 0.111 0.889 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.200 1.200 24 H -0.231 1.231 25 C -0.010 4.010 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.215 0.785 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.459 14.497 12.086 22.616 hybrid contribution -0.920 0.697 -1.770 2.113 sum -13.379 15.194 10.317 22.722 Atomic orbital electron populations 1.22537 0.87385 1.02416 1.01065 1.65083 1.08533 1.14778 1.33040 1.23168 0.95280 0.89502 1.01646 1.22287 0.96707 0.97161 0.99922 1.22262 0.94124 0.97642 1.01234 1.22657 0.98242 0.92578 0.93497 0.90858 1.20229 0.76462 0.88602 0.84030 1.90712 1.47443 1.73419 1.27526 1.45971 1.75201 1.07251 1.09910 1.21997 1.03108 0.78990 0.97567 1.22522 0.87091 0.96777 0.87329 1.86601 1.50975 1.27743 1.69621 1.22778 1.00877 0.91415 1.00148 1.22080 0.91850 0.93137 0.94553 1.44711 1.19895 1.06182 1.62487 1.18635 0.88798 1.12076 1.17580 0.88943 1.24937 0.96092 0.98051 0.98661 1.69825 1.17383 1.31739 1.36417 0.86992 0.82952 0.79923 0.78485 1.21185 1.20010 1.23134 1.21980 0.91941 0.91586 0.95461 0.91031 0.90819 0.95357 0.89619 0.93582 0.90523 0.90820 0.90180 0.90110 0.76880 0.90707 0.90116 0.78535 0.89476 0.90344 0.94735 0.91914 0.92663 0.94021 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.44 60.07 0.57 0.70 16 2 N -0.49 -5.09 4.92 -231.72 -1.14 -6.23 16 3 C 0.03 0.24 6.49 -2.18 -0.01 0.23 16 4 C -0.12 -0.89 7.00 -25.35 -0.18 -1.07 16 5 C -0.11 -0.98 6.54 -25.35 -0.17 -1.15 16 6 C 0.04 0.41 2.68 -67.22 -0.18 0.23 16 7 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 8 C 0.52 6.61 6.72 -10.99 -0.07 6.54 16 9 O -0.52 -8.70 16.56 5.55 0.09 -8.61 16 10 N -0.73 -8.22 5.17 -60.30 -0.31 -8.53 16 11 C 0.11 1.43 4.73 -4.05 -0.02 1.41 16 12 C 0.10 1.60 0.91 -88.79 -0.08 1.52 16 13 O -0.54 -8.07 13.10 -35.23 -0.46 -8.53 16 14 C -0.11 -1.91 6.27 -24.46 -0.15 -2.06 16 15 C 0.11 2.38 4.67 -2.41 -0.01 2.37 16 16 N -0.61 -14.45 3.24 -169.94 -0.55 -15.00 16 17 C -0.24 -6.88 10.60 -15.06 -0.16 -7.04 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.02 0.61 5.45 -17.43 -0.09 0.52 16 20 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16 21 Si 0.89 22.78 24.23 -169.99 -4.12 18.66 16 22 H -0.28 -7.03 6.39 56.52 0.36 -6.67 16 23 H -0.27 -7.03 6.45 56.52 0.36 -6.66 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 C 0.12 2.15 6.02 -3.06 -0.02 2.13 16 26 H 0.07 0.74 7.96 -51.93 -0.41 0.33 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.03 0.21 7.98 -51.93 -0.41 -0.21 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.30 7.91 -51.93 -0.41 -0.11 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.40 3.56 7.38 -40.82 -0.30 3.26 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 38 H 0.37 3.91 8.12 45.56 0.37 4.28 16 39 H 0.09 1.35 8.04 -51.93 -0.42 0.93 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.81 5.55 -51.93 -0.29 0.52 16 42 H 0.06 1.46 6.24 -51.93 -0.32 1.13 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.04 0.77 7.82 -51.93 -0.41 0.36 16 45 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -35.19 351.05 -7.87 -43.06 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.86 Total: 2.83 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.58 Total: 4.33 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -1.23 Total: -57.02 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.37 Total: -17.14 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.12 Total: 18.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.19 -7.87 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754750480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.881 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds