Wall clock time and date at job start Tue Mar 31 2020 03:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48559 * 111.00063 * 2 1 4 4 C 1.54375 * 104.59488 * 200.95970 * 3 2 1 5 5 C 1.54258 * 105.06267 * 23.85682 * 4 3 2 6 6 C 1.48568 * 110.99638 * 244.58208 * 2 1 3 7 7 H 1.08993 * 110.51465 * 40.21694 * 6 2 1 8 8 C 1.50695 * 110.41511 * 277.81674 * 6 2 1 9 9 O 1.21286 * 119.99596 * 344.83022 * 8 6 2 10 10 N 1.34766 * 120.00492 * 164.82877 * 8 6 2 11 11 C 1.46493 * 120.00526 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47423 * 179.97438 * 11 10 8 13 13 O 1.42897 * 110.64310 * 298.31491 * 12 11 10 14 14 C 1.55157 * 110.72409 * 174.97553 * 12 11 10 15 15 C 1.55127 * 101.49189 * 205.97241 * 14 12 11 16 16 N 1.47427 * 104.71790 * 37.29648 * 15 14 12 17 17 C 1.36942 * 125.64570 * 155.81805 * 16 15 14 18 18 H 1.07993 * 119.99748 * 196.01564 * 17 16 15 19 19 C 1.38814 * 119.99909 * 16.02045 * 17 16 15 20 20 N 1.31614 * 119.99615 * 201.19526 * 19 17 16 21 21 Si 1.86794 * 120.00045 * 21.19658 * 19 17 16 22 22 H 1.48500 * 109.47126 * 275.67470 * 21 19 17 23 23 H 1.48500 * 109.47392 * 35.67395 * 21 19 17 24 24 H 1.48501 * 109.47066 * 155.67393 * 21 19 17 25 25 C 1.47023 * 108.70338 * 335.55334 * 16 15 14 26 26 H 1.09000 * 109.47087 * 175.41283 * 1 2 3 27 27 H 1.08997 * 109.46887 * 295.41594 * 1 2 3 28 28 H 1.08996 * 109.47061 * 55.41810 * 1 2 3 29 29 H 1.09003 * 110.41111 * 82.18493 * 3 2 1 30 30 H 1.08999 * 110.51571 * 319.79051 * 3 2 1 31 31 H 1.08999 * 110.32509 * 264.95898 * 4 3 2 32 32 H 1.09000 * 110.40889 * 142.79699 * 4 3 2 33 33 H 1.09003 * 110.32524 * 241.10539 * 5 4 3 34 34 H 1.09002 * 110.41307 * 118.93912 * 5 4 3 35 35 H 0.97005 * 119.99589 * 0.02562 * 10 8 6 36 36 H 1.09005 * 109.47145 * 60.00281 * 11 10 8 37 37 H 1.08998 * 109.47414 * 300.00264 * 11 10 8 38 38 H 0.96702 * 113.99733 * 61.68828 * 13 12 11 39 39 H 1.09004 * 111.00314 * 324.21791 * 14 12 11 40 40 H 1.09007 * 111.00338 * 88.02322 * 14 12 11 41 41 H 1.08995 * 110.49589 * 278.45403 * 15 14 12 42 42 H 1.08999 * 110.34197 * 156.05693 * 15 14 12 43 43 H 0.97003 * 119.99617 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.87848 * 120.71062 * 25 16 15 45 45 H 1.08997 * 109.88156 * 241.71531 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0538 -1.3586 6 6 2.0014 -0.5953 -1.2528 7 1 1.4105 -0.2730 -2.1100 8 6 2.0104 -2.0993 -1.1576 9 8 1.8829 -2.6394 -0.0792 10 7 2.1600 -2.8441 -2.2707 11 6 2.1682 -4.3061 -2.1783 12 6 2.3508 -4.9044 -3.5746 13 8 1.2658 -4.5335 -4.4274 14 6 2.4900 -6.4477 -3.4967 15 6 3.3058 -6.7497 -4.7811 16 7 4.2549 -5.6273 -4.8945 17 6 5.4532 -5.6593 -5.5567 18 1 6.1912 -4.8921 -5.3748 19 6 5.7191 -6.6777 -6.4617 20 7 6.9630 -6.9663 -6.7807 21 14 4.3116 -7.6383 -7.2268 22 1 3.9038 -8.7333 -6.3102 23 1 3.1594 -6.7301 -7.4563 24 1 4.7527 -8.2155 -8.5220 25 6 3.6990 -4.4662 -4.1843 26 1 -0.3633 -1.0244 -0.0822 27 1 -0.3633 0.4411 0.9282 28 1 -0.3633 0.5833 -0.8461 29 1 2.0080 1.7916 1.0121 30 1 1.4105 2.0229 -0.6590 31 1 4.1483 1.1747 0.2934 32 1 3.6954 2.0993 -1.1695 33 1 4.1483 -0.7693 -0.9352 34 1 3.6943 0.1538 -2.3987 35 1 2.2623 -2.4120 -3.1332 36 1 1.2230 -4.6488 -1.7574 37 1 2.9890 -4.6249 -1.5359 38 1 1.1848 -3.5803 -4.5688 39 1 3.0378 -6.7460 -2.6027 40 1 1.5133 -6.9305 -3.5330 41 1 2.6500 -6.7813 -5.6511 42 1 3.8434 -7.6920 -4.6757 43 1 7.1488 -7.6782 -7.4128 44 1 4.3804 -4.1550 -3.3925 45 1 3.5429 -3.6443 -4.8830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754750480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:43 Heat of formation + Delta-G solvation = -72.499139 kcal Electronic energy + Delta-G solvation = -25096.033649 eV Core-core repulsion = 21534.259111 eV Total energy + Delta-G solvation = -3561.774538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41483 -40.36922 -38.82242 -36.95617 -35.32964 -34.24394 -33.16232 -31.91476 -30.83521 -29.69108 -27.62334 -26.61940 -25.20319 -23.26945 -22.79341 -21.88998 -21.40974 -21.09653 -19.00711 -18.83856 -17.69895 -17.34401 -17.02597 -16.83091 -16.20598 -15.99666 -15.82106 -15.50952 -15.26294 -15.11235 -14.73377 -14.66007 -14.24006 -14.12426 -13.86267 -13.54368 -13.33371 -13.31655 -12.98077 -12.94678 -12.79237 -12.57046 -12.36937 -12.16330 -12.04376 -12.01478 -11.80967 -11.57036 -11.42261 -11.06404 -10.87962 -10.77074 -10.17309 -9.46538 -9.10359 -8.19189 -5.45974 1.29323 1.38468 1.46830 1.60305 1.97219 2.39483 2.96625 3.08132 3.13421 3.18212 3.50991 3.59631 3.62625 3.71425 3.75964 3.97105 4.04958 4.24653 4.33036 4.35904 4.42157 4.47097 4.55980 4.62141 4.71361 4.72956 4.74159 4.83510 4.88515 4.91872 4.96924 5.02856 5.04082 5.11350 5.14027 5.23812 5.32377 5.61990 5.74769 5.98987 6.07726 6.48897 6.71417 6.73452 7.23457 7.50926 8.05993 9.00345 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026808 B = 0.003458 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.226579 B = 8096.111386 C = 8699.958118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.033 3.967 4 C -0.120 4.120 5 C -0.115 4.115 6 C 0.046 3.954 7 H 0.100 0.900 8 C 0.521 3.479 9 O -0.564 6.564 10 N -0.719 5.719 11 C 0.120 3.880 12 C 0.126 3.874 13 O -0.552 6.552 14 C -0.108 4.108 15 C 0.101 3.899 16 N -0.625 5.625 17 C -0.234 4.234 18 H 0.064 0.936 19 C -0.037 4.037 20 N -0.957 5.957 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.309 1.309 25 C 0.112 3.888 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.411 0.589 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.388 0.612 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.026 0.974 42 H 0.044 0.956 43 H 0.263 0.737 44 H 0.043 0.957 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.951 17.491 11.115 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.246 5.246 3 C -0.094 4.094 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.066 4.066 7 H 0.118 0.882 8 C 0.308 3.692 9 O -0.441 6.441 10 N -0.373 5.373 11 C -0.005 4.005 12 C 0.084 3.916 13 O -0.360 6.360 14 C -0.147 4.147 15 C -0.024 4.024 16 N -0.352 5.352 17 C -0.362 4.362 18 H 0.082 0.918 19 C -0.232 4.232 20 N -0.604 5.604 21 Si 0.777 3.223 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.238 1.238 25 C -0.013 4.013 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.247 0.753 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.238 0.762 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.816 16.084 12.242 25.062 hybrid contribution -0.176 0.312 -1.753 1.789 sum -14.992 16.396 10.489 24.569 Atomic orbital electron populations 1.22501 0.86853 1.01530 1.02236 1.65034 1.09358 1.16506 1.33735 1.23216 0.95460 0.88393 1.02318 1.22307 0.96451 0.97210 0.99873 1.22301 0.92821 0.97650 1.02557 1.22691 0.99348 0.90188 0.94399 0.88217 1.20821 0.75125 0.89951 0.83346 1.90690 1.49675 1.74484 1.29269 1.45848 1.74508 1.06435 1.10481 1.21728 1.02887 0.80083 0.95755 1.22173 0.85568 0.95833 0.88029 1.86571 1.50109 1.29841 1.69472 1.22773 1.01273 0.92719 0.97902 1.22133 0.91603 0.91839 0.96809 1.44816 1.19295 1.08950 1.62178 1.18610 0.90034 1.10597 1.16981 0.91772 1.25556 0.98013 0.99808 0.99774 1.69947 1.19351 1.33246 1.37843 0.85992 0.79994 0.79039 0.77324 1.19657 1.19621 1.23783 1.22196 0.93611 0.90279 0.95239 0.93015 0.90244 0.93460 0.89439 0.91806 0.91283 0.88628 0.92529 0.88048 0.75273 0.90271 0.91210 0.76243 0.88244 0.88036 0.95596 0.93755 0.92849 0.93930 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.44 127.69 1.21 1.48 16 2 N -0.52 -9.91 4.92 -887.02 -4.36 -14.27 16 3 C 0.03 0.43 6.49 86.45 0.56 0.99 16 4 C -0.12 -1.47 7.00 31.49 0.22 -1.25 16 5 C -0.11 -1.73 6.54 31.49 0.21 -1.53 16 6 C 0.05 0.79 2.68 44.32 0.12 0.90 16 7 H 0.10 1.19 7.97 -2.39 -0.02 1.17 16 8 C 0.52 12.41 6.72 87.66 0.59 12.99 16 9 O -0.56 -18.71 16.56 -3.05 -0.05 -18.76 16 10 N -0.72 -14.50 5.17 -463.09 -2.40 -16.89 16 11 C 0.12 2.92 4.73 86.38 0.41 3.33 16 12 C 0.13 3.50 0.91 -9.61 -0.01 3.50 16 13 O -0.55 -14.36 13.10 -148.98 -1.95 -16.31 16 14 C -0.11 -3.36 6.27 32.06 0.20 -3.16 16 15 C 0.10 4.25 4.67 86.93 0.41 4.66 16 16 N -0.63 -29.36 3.24 -691.56 -2.24 -31.61 16 17 C -0.23 -13.35 10.60 84.03 0.89 -12.45 16 18 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 19 C -0.04 -2.20 5.45 84.86 0.46 -1.73 16 20 N -0.96 -60.52 13.97 21.65 0.30 -60.22 16 21 Si 0.95 47.51 24.23 68.60 1.66 49.17 16 22 H -0.27 -12.78 6.39 99.48 0.64 -12.15 16 23 H -0.27 -13.25 6.45 99.48 0.64 -12.61 16 24 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 25 C 0.11 3.93 6.02 86.73 0.52 4.45 16 26 H 0.05 1.02 7.96 -2.39 -0.02 1.00 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 0.56 7.98 -2.39 -0.02 0.54 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.60 7.91 -2.39 -0.02 0.58 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.12 7.85 -2.39 -0.02 1.10 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 6.06 7.38 -92.70 -0.68 5.37 16 36 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 38 H 0.39 6.68 8.12 -74.06 -0.60 6.08 16 39 H 0.10 2.84 8.04 -2.39 -0.02 2.83 16 40 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 41 H 0.03 1.16 5.55 -2.39 -0.01 1.15 16 42 H 0.04 2.01 6.24 -2.39 -0.01 2.00 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.04 1.50 7.82 -2.39 -0.02 1.49 16 45 H 0.04 1.47 8.06 -2.39 -0.02 1.45 16 Total: -1.00 -77.65 351.05 -3.68 -81.34 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -0.43 Total: 15.39 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.78 Total: 12.17 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -8.70 Total: -122.99 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -2.00 Total: -35.08 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.66 Total: 49.17 kcal Total: -77.65 -3.68 -81.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754750480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.839 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds