Wall clock time and date at job start Tue Mar 31 2020 03:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21275 * 120.00321 * 2 1 4 4 N 1.34781 * 119.99787 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00232 * 0.02562 * 4 2 1 6 6 C 1.46500 * 119.99775 * 179.97438 * 4 2 1 7 7 C 1.50697 * 109.47628 * 270.00561 * 6 4 2 8 8 O 1.21286 * 120.00188 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00075 * 180.02562 * 7 6 4 10 10 C 1.47019 * 125.64789 * 359.97157 * 9 7 6 11 11 C 1.54320 * 107.27236 * 181.10531 * 10 9 7 12 12 C 1.55166 * 102.94209 * 22.19556 * 11 10 9 13 13 H 1.08999 * 111.00205 * 82.60428 * 12 11 10 14 14 C 1.52992 * 111.00420 * 206.42346 * 12 11 10 15 15 C 1.53004 * 109.47319 * 293.54388 * 14 12 11 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 12 17 17 C 1.36931 * 120.00122 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47425 * 125.64641 * 180.02562 * 9 7 6 26 26 H 1.09005 * 109.47070 * 239.99383 * 1 2 3 27 27 H 1.09000 * 109.47355 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47598 * 120.00028 * 1 2 3 29 29 H 1.09000 * 109.46690 * 269.99425 * 5 4 2 30 30 H 1.09003 * 109.47353 * 29.98996 * 5 4 2 31 31 H 1.08994 * 109.47677 * 150.00006 * 5 4 2 32 32 H 1.09001 * 109.47092 * 150.00221 * 6 4 2 33 33 H 1.09003 * 109.46896 * 30.01115 * 6 4 2 34 34 H 1.08998 * 109.88094 * 61.69305 * 10 9 7 35 35 H 1.08994 * 109.88447 * 300.52764 * 10 9 7 36 36 H 1.08998 * 110.72428 * 263.83695 * 11 10 9 37 37 H 1.09001 * 110.87380 * 140.62892 * 11 10 9 38 38 H 1.09000 * 109.47364 * 173.54407 * 14 12 11 39 39 H 1.08998 * 109.47610 * 53.54470 * 14 12 11 40 40 H 1.08995 * 109.46638 * 60.00097 * 15 14 12 41 41 H 1.08998 * 109.46846 * 300.00550 * 15 14 12 42 42 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 43 43 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.36455 * 36.99069 * 25 9 7 45 45 H 1.08993 * 110.36942 * 274.66277 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4483 -2.4360 -0.0017 6 6 3.6458 -1.1673 -0.0011 7 6 4.1477 -1.1668 -1.4220 8 8 3.3593 -1.1670 -2.3437 9 7 5.4727 -1.1672 -1.6687 10 6 6.5338 -1.1676 -0.6510 11 6 7.8843 -1.1396 -1.3972 12 6 7.5038 -0.5539 -2.7827 13 1 7.4552 0.5344 -2.7468 14 6 8.4815 -1.0210 -3.8628 15 6 9.8639 -0.4237 -3.5923 16 7 10.7999 -0.8706 -4.6269 17 6 12.1060 -0.4609 -4.5916 18 1 12.4463 0.1913 -3.8009 19 6 12.9929 -0.8838 -5.5722 20 7 12.5783 -1.6791 -6.5357 21 14 14.7765 -0.3312 -5.5197 22 1 15.5116 -0.9218 -6.6668 23 1 14.8382 1.1503 -5.6022 24 1 15.3974 -0.7826 -4.2485 25 6 6.0981 -1.1663 -3.0038 26 1 -0.3633 -0.5140 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 1.2664 -2.7513 1.0258 30 1 0.4960 -2.3053 -0.5156 31 1 2.0375 -3.1953 -0.5157 32 1 4.0094 -2.0574 0.5124 33 1 4.0093 -0.2775 0.5130 34 1 6.4645 -2.0700 -0.0437 35 1 6.4412 -0.2847 -0.0187 36 1 8.2880 -2.1466 -1.5020 37 1 8.5966 -0.4912 -0.8869 38 1 8.1282 -0.6915 -4.8399 39 1 8.5466 -2.1090 -3.8481 40 1 10.2172 -0.7534 -2.6153 41 1 9.7988 0.6642 -3.6070 42 1 10.4946 -1.4572 -5.3365 43 1 13.1982 -1.9749 -7.2207 44 1 5.5202 -0.5506 -3.6929 45 1 6.1833 -2.1844 -3.3835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754904280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:03 Heat of formation + Delta-G solvation = -58.247525 kcal Electronic energy + Delta-G solvation = -23790.728352 eV Core-core repulsion = 20229.571811 eV Total energy + Delta-G solvation = -3561.156542 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66490 -39.60237 -37.80311 -35.71985 -35.14302 -33.06041 -31.31965 -30.70164 -29.59239 -28.64580 -27.33021 -26.12275 -23.86281 -23.03751 -21.58927 -20.20779 -20.13683 -19.08428 -17.60331 -17.34517 -17.10812 -16.75361 -15.94162 -15.80869 -15.20284 -14.69944 -14.61125 -14.12947 -13.77736 -13.59512 -13.55656 -13.33173 -13.21508 -13.05875 -12.93685 -12.79243 -12.62888 -12.46566 -12.21324 -12.06841 -11.64316 -11.30966 -11.06116 -10.80385 -10.65669 -10.48064 -10.34821 -10.28303 -10.19327 -10.02453 -9.67795 -9.05877 -8.85480 -8.78646 -6.90782 -5.75183 -3.03914 2.19012 2.44147 2.50760 2.98560 3.44849 3.48925 3.50255 4.21409 4.22508 4.49104 4.59236 4.62948 4.67113 4.72152 4.83673 4.86119 4.94168 4.98592 5.09345 5.12901 5.23827 5.26077 5.39959 5.48380 5.55498 5.62203 5.68303 5.80131 5.81841 5.88599 5.92542 6.11719 6.13181 6.26291 6.37003 6.40741 6.84952 6.89863 6.92973 7.33759 7.70228 7.79416 7.98645 8.43985 9.54641 10.13493 10.47705 11.47733 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.046773 B = 0.002172 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.497105 B =12887.032134 C =12972.022688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.542 6.542 4 N -0.604 5.604 5 C 0.082 3.918 6 C 0.100 3.900 7 C 0.512 3.488 8 O -0.536 6.536 9 N -0.617 5.617 10 C 0.097 3.903 11 C -0.127 4.127 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.115 4.115 15 C 0.155 3.845 16 N -0.735 5.735 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.110 3.890 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.020 -3.045 17.746 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.306 3.694 3 O -0.418 6.418 4 N -0.337 5.337 5 C -0.061 4.061 6 C -0.026 4.026 7 C 0.299 3.701 8 O -0.412 6.412 9 N -0.353 5.353 10 C -0.026 4.026 11 C -0.164 4.164 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.153 4.153 15 C 0.027 3.973 16 N -0.379 5.379 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.213 1.213 25 C -0.012 4.012 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.086 -2.415 17.331 29.771 hybrid contribution 1.034 -0.075 -0.306 1.081 sum -23.052 -2.490 17.024 28.765 Atomic orbital electron populations 1.21920 0.91307 1.05548 1.04186 1.20863 0.90850 0.82820 0.74898 1.90728 1.70774 1.31087 1.49252 1.47474 1.05181 1.07120 1.73955 1.21831 0.97600 0.84997 1.01665 1.21266 0.81504 1.05568 0.94291 1.20807 0.80831 0.76431 0.92080 1.90701 1.54392 1.49808 1.46299 1.48557 1.04826 1.73085 1.08782 1.22160 0.87585 1.01541 0.91341 1.22733 0.95134 1.02890 0.95688 1.22341 0.93236 1.00623 0.95212 0.89674 1.21663 0.95142 1.00993 0.97552 1.20623 0.87836 0.96145 0.92675 1.42371 1.06927 1.58928 1.29669 1.19189 0.85995 1.23858 1.08039 0.91253 1.24760 0.98336 1.00368 0.97698 1.69657 1.34659 1.38463 1.15518 0.86250 0.84895 0.78063 0.76870 1.21687 1.21273 1.21277 1.22351 0.93173 1.01330 0.84348 0.89355 0.88955 0.89111 0.92175 0.90521 0.90922 0.87486 0.86865 0.91319 0.91223 0.90005 0.89480 0.91528 0.91594 0.96247 0.96517 0.78317 0.93474 0.90499 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 8.87 36.00 0.32 -0.72 16 2 C 0.52 5.53 7.78 -10.99 -0.09 5.45 16 3 O -0.54 -8.23 16.66 5.56 0.09 -8.14 16 4 N -0.60 -5.39 2.36 -182.96 -0.43 -5.83 16 5 C 0.08 0.42 10.24 59.85 0.61 1.03 16 6 C 0.10 0.91 5.08 -5.19 -0.03 0.88 16 7 C 0.51 6.49 7.92 -10.99 -0.09 6.41 16 8 O -0.54 -8.86 16.69 5.55 0.09 -8.77 16 9 N -0.62 -7.18 3.33 -170.53 -0.57 -7.74 16 10 C 0.10 0.84 6.49 -3.07 -0.02 0.82 16 11 C -0.13 -1.30 5.59 -24.89 -0.14 -1.44 16 12 C -0.09 -1.17 3.07 -88.47 -0.27 -1.45 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.12 -1.78 4.84 -26.73 -0.13 -1.91 16 15 C 0.15 3.04 6.11 -4.04 -0.02 3.02 16 16 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 20 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.11 1.39 6.38 -2.53 -0.02 1.37 16 26 H 0.09 0.30 8.11 -51.93 -0.42 -0.12 16 27 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.09 0.46 7.40 -51.93 -0.38 0.07 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.31 6.44 -51.93 -0.33 -0.02 16 31 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.11 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 37 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 40 H 0.02 0.38 7.50 -51.93 -0.39 -0.01 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 10.30 7.67 -40.82 -0.31 9.99 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 1.07 8.04 -51.93 -0.42 0.66 16 45 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -37.41 370.55 -7.64 -45.05 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.66 Total: 3.31 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.11 Total: 5.97 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.61 Total: -60.53 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.19 Total: -16.91 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.41 -7.64 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754904280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.200 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds