Wall clock time and date at job start Tue Mar 31 2020 03:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21275 * 120.00321 * 2 1 4 4 N 1.34781 * 119.99787 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00232 * 0.02562 * 4 2 1 6 6 C 1.46500 * 119.99775 * 179.97438 * 4 2 1 7 7 C 1.50697 * 109.47628 * 270.00561 * 6 4 2 8 8 O 1.21286 * 120.00188 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00075 * 180.02562 * 7 6 4 10 10 C 1.47019 * 125.64789 * 359.97157 * 9 7 6 11 11 C 1.54320 * 107.27236 * 181.10531 * 10 9 7 12 12 C 1.55166 * 102.94209 * 22.19556 * 11 10 9 13 13 H 1.08999 * 111.00205 * 82.60428 * 12 11 10 14 14 C 1.52992 * 111.00420 * 206.42346 * 12 11 10 15 15 C 1.53004 * 109.47319 * 293.54388 * 14 12 11 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 12 17 17 C 1.36931 * 120.00122 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47425 * 125.64641 * 180.02562 * 9 7 6 26 26 H 1.09005 * 109.47070 * 239.99383 * 1 2 3 27 27 H 1.09000 * 109.47355 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47598 * 120.00028 * 1 2 3 29 29 H 1.09000 * 109.46690 * 269.99425 * 5 4 2 30 30 H 1.09003 * 109.47353 * 29.98996 * 5 4 2 31 31 H 1.08994 * 109.47677 * 150.00006 * 5 4 2 32 32 H 1.09001 * 109.47092 * 150.00221 * 6 4 2 33 33 H 1.09003 * 109.46896 * 30.01115 * 6 4 2 34 34 H 1.08998 * 109.88094 * 61.69305 * 10 9 7 35 35 H 1.08994 * 109.88447 * 300.52764 * 10 9 7 36 36 H 1.08998 * 110.72428 * 263.83695 * 11 10 9 37 37 H 1.09001 * 110.87380 * 140.62892 * 11 10 9 38 38 H 1.09000 * 109.47364 * 173.54407 * 14 12 11 39 39 H 1.08998 * 109.47610 * 53.54470 * 14 12 11 40 40 H 1.08995 * 109.46638 * 60.00097 * 15 14 12 41 41 H 1.08998 * 109.46846 * 300.00550 * 15 14 12 42 42 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 43 43 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.36455 * 36.99069 * 25 9 7 45 45 H 1.08993 * 110.36942 * 274.66277 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4483 -2.4360 -0.0017 6 6 3.6458 -1.1673 -0.0011 7 6 4.1477 -1.1668 -1.4220 8 8 3.3593 -1.1670 -2.3437 9 7 5.4727 -1.1672 -1.6687 10 6 6.5338 -1.1676 -0.6510 11 6 7.8843 -1.1396 -1.3972 12 6 7.5038 -0.5539 -2.7827 13 1 7.4552 0.5344 -2.7468 14 6 8.4815 -1.0210 -3.8628 15 6 9.8639 -0.4237 -3.5923 16 7 10.7999 -0.8706 -4.6269 17 6 12.1060 -0.4609 -4.5916 18 1 12.4463 0.1913 -3.8009 19 6 12.9929 -0.8838 -5.5722 20 7 12.5783 -1.6791 -6.5357 21 14 14.7765 -0.3312 -5.5197 22 1 15.5116 -0.9218 -6.6668 23 1 14.8382 1.1503 -5.6022 24 1 15.3974 -0.7826 -4.2485 25 6 6.0981 -1.1663 -3.0038 26 1 -0.3633 -0.5140 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 1.2664 -2.7513 1.0258 30 1 0.4960 -2.3053 -0.5156 31 1 2.0375 -3.1953 -0.5157 32 1 4.0094 -2.0574 0.5124 33 1 4.0093 -0.2775 0.5130 34 1 6.4645 -2.0700 -0.0437 35 1 6.4412 -0.2847 -0.0187 36 1 8.2880 -2.1466 -1.5020 37 1 8.5966 -0.4912 -0.8869 38 1 8.1282 -0.6915 -4.8399 39 1 8.5466 -2.1090 -3.8481 40 1 10.2172 -0.7534 -2.6153 41 1 9.7988 0.6642 -3.6070 42 1 10.4946 -1.4572 -5.3365 43 1 13.1982 -1.9749 -7.2207 44 1 5.5202 -0.5506 -3.6929 45 1 6.1833 -2.1844 -3.3835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754904280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:02 Heat of formation + Delta-G solvation = -84.690242 kcal Electronic energy + Delta-G solvation = -23791.874995 eV Core-core repulsion = 20229.571811 eV Total energy + Delta-G solvation = -3562.303184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52029 -40.46669 -38.85697 -36.85227 -36.46078 -34.59547 -32.76801 -31.63692 -30.60494 -29.54762 -28.34737 -26.94650 -25.56976 -24.01474 -23.15409 -21.27398 -21.01200 -19.89770 -19.13909 -18.45612 -18.04677 -17.63418 -16.81205 -16.70287 -16.59611 -16.13626 -15.62220 -15.37717 -15.26429 -15.04230 -14.42971 -14.37359 -14.03811 -13.97107 -13.77462 -13.50273 -13.40893 -13.24305 -13.08046 -13.03209 -12.86538 -12.75717 -12.73753 -12.34328 -12.23223 -11.96863 -11.65807 -11.57454 -11.51010 -11.26009 -11.01394 -10.90689 -9.78051 -9.72306 -8.99881 -7.95146 -5.24356 1.40718 1.47464 1.50951 1.51578 1.57085 1.83669 2.20204 2.56525 3.33924 3.38456 3.59966 3.66710 3.71087 3.81407 4.12634 4.15980 4.23982 4.28575 4.31467 4.35136 4.44984 4.47506 4.58047 4.58806 4.61080 4.76804 4.77040 4.83199 4.86461 4.89169 4.95828 5.06703 5.07865 5.19875 5.26593 5.35336 5.37907 5.45294 5.49604 6.27372 6.28855 6.44113 6.99966 7.10731 7.33022 8.10252 8.32355 9.28386 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.046773 B = 0.002172 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.497105 B =12887.032134 C =12972.022688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.600 6.600 4 N -0.605 5.605 5 C 0.075 3.925 6 C 0.103 3.897 7 C 0.504 3.496 8 O -0.584 6.584 9 N -0.618 5.618 10 C 0.098 3.902 11 C -0.123 4.123 12 C -0.087 4.087 13 H 0.082 0.918 14 C -0.101 4.101 15 C 0.154 3.846 16 N -0.751 5.751 17 C -0.247 4.247 18 H 0.077 0.923 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 0.976 3.024 22 H -0.296 1.296 23 H -0.278 1.278 24 H -0.275 1.275 25 C 0.112 3.888 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.015 0.985 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.055 0.945 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 -3.786 20.347 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.337 5.337 5 C -0.066 4.066 6 C -0.024 4.024 7 C 0.293 3.707 8 O -0.464 6.464 9 N -0.352 5.352 10 C -0.024 4.024 11 C -0.161 4.161 12 C -0.107 4.107 13 H 0.100 0.900 14 C -0.140 4.140 15 C 0.028 3.972 16 N -0.393 5.393 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.222 1.222 23 H -0.205 1.205 24 H -0.201 1.201 25 C -0.011 4.011 26 H 0.140 0.860 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.544 -3.178 19.997 31.818 hybrid contribution 1.132 0.141 -1.102 1.586 sum -23.412 -3.037 18.895 30.238 Atomic orbital electron populations 1.21946 0.88024 1.05938 1.06306 1.21728 0.92662 0.82472 0.73820 1.90691 1.72164 1.33134 1.52170 1.47708 1.05387 1.08013 1.72548 1.22104 0.97585 0.83118 1.03793 1.21397 0.81930 1.07272 0.91808 1.21565 0.80638 0.75343 0.93203 1.90670 1.55610 1.52156 1.48010 1.48668 1.05320 1.72316 1.08903 1.22350 0.85450 1.03927 0.90665 1.22741 0.96343 1.02887 0.94135 1.22170 0.92316 1.00439 0.95726 0.89976 1.21482 0.93603 1.00722 0.98157 1.20794 0.88793 0.96024 0.91612 1.42638 1.07175 1.58829 1.30685 1.19629 0.87251 1.23153 1.07816 0.90499 1.25636 1.02727 1.01099 0.97721 1.69823 1.35868 1.40129 1.16368 0.85169 0.79691 0.77755 0.76894 1.22187 1.20462 1.20072 1.22199 0.92965 1.00901 0.85040 0.86032 0.89564 0.87847 0.89074 0.89447 0.91174 0.83366 0.87201 0.88095 0.89716 0.89864 0.88593 0.92742 0.91499 0.94942 0.96738 0.79581 0.94004 0.92650 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.87 71.23 0.63 -1.09 16 2 C 0.50 10.41 7.78 87.65 0.68 11.10 16 3 O -0.60 -18.67 16.66 -3.01 -0.05 -18.72 16 4 N -0.60 -9.77 2.36 -851.15 -2.01 -11.78 16 5 C 0.08 0.56 10.24 127.77 1.31 1.87 16 6 C 0.10 1.65 5.08 85.63 0.43 2.09 16 7 C 0.50 12.42 7.92 87.66 0.69 13.11 16 8 O -0.58 -19.64 16.69 -3.05 -0.05 -19.69 16 9 N -0.62 -13.62 3.33 -811.81 -2.70 -16.32 16 10 C 0.10 1.42 6.49 86.73 0.56 1.98 16 11 C -0.12 -2.24 5.59 31.78 0.18 -2.07 16 12 C -0.09 -2.09 3.07 -9.40 -0.03 -2.12 16 13 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 14 C -0.10 -3.13 4.84 30.59 0.15 -2.98 16 15 C 0.15 5.97 6.11 86.38 0.53 6.50 16 16 N -0.75 -38.64 5.60 -343.46 -1.92 -40.56 16 17 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 18 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 21 Si 0.98 46.33 29.55 68.60 2.03 48.35 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 C 0.11 2.82 6.38 86.86 0.55 3.37 16 26 H 0.12 0.44 8.11 -2.38 -0.02 0.43 16 27 H 0.09 1.02 8.12 -2.39 -0.02 1.01 16 28 H 0.10 0.84 7.40 -2.38 -0.02 0.82 16 29 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.09 0.47 6.44 -2.39 -0.02 0.45 16 31 H 0.07 0.59 8.07 -2.39 -0.02 0.57 16 32 H 0.15 1.09 8.07 -2.39 -0.02 1.07 16 33 H 0.11 1.90 7.42 -2.39 -0.02 1.88 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.53 8.01 -2.39 -0.02 1.51 16 37 H 0.10 1.61 8.13 -2.39 -0.02 1.59 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 40 H 0.03 1.20 7.50 -2.39 -0.02 1.18 16 41 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 43 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 44 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 45 H 0.07 1.77 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -83.66 370.55 2.83 -80.83 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.26 Total: 23.27 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 7.00 Total: 14.52 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -6.35 Total: -128.56 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.10 Total: -38.42 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -83.66 2.83 -80.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754904280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.860 kcal (2) G-P(sol) polarization free energy of solvation -83.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds