Wall clock time and date at job start Tue Mar 31 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47013 * 2 1 4 4 C 1.52997 * 109.47455 * 239.99213 * 2 1 3 5 5 N 1.46504 * 109.47073 * 185.00153 * 4 2 1 6 6 C 1.34778 * 119.99744 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00402 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99780 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.73382 * 294.70639 * 8 6 5 10 10 C 1.53348 * 109.60042 * 55.11368 * 8 6 5 11 11 C 1.53067 * 108.42784 * 52.22732 * 10 8 6 12 12 C 1.50177 * 109.89104 * 48.89436 * 11 10 8 13 13 O 1.21283 * 118.24084 * 162.41840 * 12 11 10 14 14 N 1.33354 * 123.50823 * 342.70590 * 12 11 10 15 15 C 1.45731 * 124.11953 * 1.64296 * 14 12 11 16 16 N 1.46506 * 109.46747 * 119.99314 * 2 1 3 17 17 C 1.46500 * 120.00134 * 60.00322 * 16 2 1 18 18 C 1.36938 * 119.99789 * 240.00138 * 16 2 1 19 19 H 1.07998 * 120.00262 * 21.45991 * 18 16 2 20 20 C 1.38814 * 119.99822 * 201.46162 * 18 16 2 21 21 N 1.31624 * 120.00153 * 13.43501 * 20 18 16 22 22 Si 1.86801 * 120.00127 * 193.43347 * 20 18 16 23 23 H 1.48499 * 109.47040 * 59.99872 * 22 20 18 24 24 H 1.48498 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46815 * 299.99763 * 22 20 18 26 26 H 1.08992 * 109.47514 * 300.00761 * 1 2 3 27 27 H 1.09004 * 109.46695 * 60.01070 * 1 2 3 28 28 H 1.09004 * 109.47013 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46918 * 65.00304 * 4 2 1 30 30 H 1.08994 * 109.47354 * 305.00366 * 4 2 1 31 31 H 0.96997 * 120.00231 * 359.97438 * 5 4 2 32 32 H 1.09007 * 109.47363 * 180.40753 * 9 8 6 33 33 H 1.08999 * 109.47326 * 300.40515 * 9 8 6 34 34 H 1.09001 * 109.47436 * 60.41256 * 9 8 6 35 35 H 1.08996 * 109.67580 * 292.49058 * 10 8 6 36 36 H 1.09008 * 109.66765 * 171.96068 * 10 8 6 37 37 H 1.09004 * 109.39678 * 288.76997 * 11 10 8 38 38 H 1.08998 * 109.33178 * 168.98151 * 11 10 8 39 39 H 0.97004 * 117.94199 * 181.91864 * 14 12 11 40 40 H 1.09006 * 109.44364 * 220.98728 * 15 14 12 41 41 H 1.09002 * 109.08957 * 101.65313 * 15 14 12 42 42 H 1.08999 * 109.46848 * 95.08975 * 17 16 2 43 43 H 1.08998 * 109.47325 * 215.09086 * 17 16 2 44 44 H 1.08998 * 109.46523 * 335.09414 * 17 16 2 45 45 H 0.96996 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1903 6 6 4.1732 -1.4285 -2.1908 7 8 3.5702 -1.8836 -3.1395 8 6 5.6752 -1.5361 -2.1306 9 6 6.2963 -0.1396 -2.1988 10 6 6.0899 -2.2204 -0.8224 11 6 5.3128 -3.5331 -0.6955 12 6 5.4108 -4.3107 -1.9765 13 8 5.1401 -5.4927 -1.9525 14 7 5.7848 -3.7723 -3.1378 15 6 6.1766 -2.3786 -3.3042 16 7 2.0182 -0.6905 1.1963 17 6 1.6643 -2.0931 1.4283 18 6 2.8054 -0.0249 2.0977 19 1 2.7904 1.0544 2.1342 20 6 3.6228 -0.7374 2.9644 21 7 3.8474 -2.0172 2.7545 22 14 4.4041 0.1202 4.4285 23 1 3.3396 0.6673 5.3076 24 1 5.2254 -0.8533 5.1920 25 1 5.2688 1.2284 3.9495 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1585 -2.1369 30 1 1.6054 -1.7199 -1.2950 31 1 3.9824 -0.4622 -0.4317 32 1 7.3826 -0.2228 -2.1623 33 1 6.0002 0.3447 -3.1293 34 1 5.9489 0.4543 -1.3534 35 1 5.8549 -1.5718 0.0215 36 1 7.1599 -2.4276 -0.8400 37 1 4.2661 -3.3150 -0.4835 38 1 5.7321 -4.1232 0.1193 39 1 5.7928 -4.3434 -3.9219 40 1 5.7549 -1.9913 -4.2318 41 1 7.2638 -2.3173 -3.3531 42 1 2.4602 -2.7356 1.0517 43 1 1.5350 -2.2632 2.4971 44 1 0.7345 -2.3238 0.9085 45 1 4.4182 -2.5152 3.3604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755314784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:33 Heat of formation + Delta-G solvation = -61.503668 kcal Electronic energy + Delta-G solvation = -26633.052726 eV Core-core repulsion = 23071.754987 eV Total energy + Delta-G solvation = -3561.297739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80000 -38.77772 -36.94365 -35.98781 -33.95407 -33.15737 -31.85609 -31.10153 -29.33334 -26.24088 -26.08912 -25.94648 -24.01695 -23.22931 -22.50566 -20.35851 -19.47485 -18.25144 -17.00109 -16.95134 -16.13242 -15.87132 -15.47335 -15.45261 -15.05434 -14.63458 -14.03472 -13.79871 -13.75799 -13.20805 -13.02568 -12.79418 -12.76005 -12.51143 -12.27697 -12.25019 -12.03112 -12.00019 -11.63944 -11.23308 -11.07127 -10.97801 -10.83242 -10.73146 -10.59681 -10.45402 -10.35539 -9.90800 -9.84097 -9.42237 -9.28588 -8.84998 -8.64161 -8.40415 -6.87925 -5.80643 -3.27579 2.99672 3.06252 3.29859 3.37972 3.39537 3.55935 3.67935 4.39588 4.50264 4.71443 4.86123 5.00966 5.24620 5.31373 5.34878 5.40748 5.52046 5.55487 5.58566 5.61079 5.75561 5.83494 5.92231 6.05309 6.09236 6.11424 6.14730 6.27222 6.32907 6.35207 6.41965 6.66092 6.76793 6.86577 7.00918 7.08917 7.35993 7.58010 7.67623 7.74680 8.14898 8.28861 8.51281 8.74373 9.14100 9.77209 10.26915 11.21552 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.006297 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.990719 B = 4445.713716 C = 5074.764020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.068 0.932 4 C 0.107 3.893 5 N -0.696 5.696 6 C 0.518 3.482 7 O -0.555 6.555 8 C -0.098 4.098 9 C -0.136 4.136 10 C -0.108 4.108 11 C -0.132 4.132 12 C 0.523 3.477 13 O -0.567 6.567 14 N -0.712 5.712 15 C 0.137 3.863 16 N -0.593 5.593 17 C 0.163 3.837 18 C -0.262 4.262 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.897 5.897 22 Si 0.899 3.101 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.285 1.285 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.414 0.586 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.396 0.604 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.041 0.959 44 H -0.002 1.002 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 4.346 -9.115 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.303 3.697 7 O -0.434 6.434 8 C -0.102 4.102 9 C -0.194 4.194 10 C -0.146 4.146 11 C -0.172 4.172 12 C 0.311 3.689 13 O -0.446 6.446 14 N -0.363 5.363 15 C 0.012 3.988 16 N -0.316 5.316 17 C 0.019 3.981 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.191 4.191 21 N -0.541 5.541 22 Si 0.729 3.271 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.211 1.211 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.230 0.770 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.364 3.437 -9.417 10.933 hybrid contribution 0.604 0.416 0.967 1.213 sum 4.967 3.853 -8.450 10.532 Atomic orbital electron populations 1.22177 0.97569 1.01469 1.00615 1.20628 0.92575 0.95809 0.85985 0.91411 1.21942 0.80131 1.00945 0.98911 1.45831 1.08002 1.57851 1.22970 1.20155 0.88896 0.77926 0.82702 1.90656 1.70034 1.48606 1.34136 1.21172 0.93685 0.97817 0.97524 1.21754 1.01072 0.93414 1.03145 1.21737 1.00102 0.96588 0.96199 1.21616 1.04705 0.96230 0.94630 1.20354 0.75032 0.87758 0.85759 1.90708 1.50463 1.16848 1.86612 1.45256 1.68584 1.11683 1.10775 1.21168 0.98608 0.80730 0.98262 1.43931 1.57818 1.09634 1.20212 1.20759 0.94113 0.84415 0.98821 1.19144 1.17168 0.90810 1.12050 0.91620 1.24926 0.98033 0.96089 1.00014 1.70060 1.39490 1.07203 1.37377 0.86446 0.78913 0.78466 0.83269 1.21312 1.21745 1.21092 0.92437 0.93629 0.92966 0.92980 0.92520 0.74800 0.91209 0.91896 0.90948 0.88568 0.90751 0.87139 0.87829 0.76962 0.89972 0.91346 0.95145 0.94029 0.98395 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.18 37.15 0.34 -2.20 16 2 C 0.16 2.86 2.87 -67.93 -0.19 2.67 16 3 H 0.07 1.20 7.85 -51.93 -0.41 0.80 16 4 C 0.11 1.89 4.97 -4.04 -0.02 1.87 16 5 N -0.70 -12.03 5.15 -60.29 -0.31 -12.34 16 6 C 0.52 8.72 4.74 -10.98 -0.05 8.67 16 7 O -0.56 -10.96 15.59 5.56 0.09 -10.88 16 8 C -0.10 -1.29 0.65 -155.52 -0.10 -1.39 16 9 C -0.14 -1.40 8.45 37.16 0.31 -1.08 16 10 C -0.11 -1.53 4.73 -26.52 -0.13 -1.65 16 11 C -0.13 -2.29 5.50 -28.10 -0.15 -2.44 16 12 C 0.52 9.42 7.44 -11.87 -0.09 9.34 16 13 O -0.57 -12.33 17.78 5.56 0.10 -12.23 16 14 N -0.71 -10.35 5.11 -61.40 -0.31 -10.66 16 15 C 0.14 1.64 5.40 -4.50 -0.02 1.61 16 16 N -0.59 -12.85 2.29 -173.48 -0.40 -13.25 16 17 C 0.16 3.73 8.10 59.85 0.48 4.21 16 18 C -0.26 -6.22 9.34 -15.06 -0.14 -6.37 16 19 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.01 0.21 5.09 -17.43 -0.09 0.12 16 21 N -0.90 -22.73 10.64 55.49 0.59 -22.14 16 22 Si 0.90 19.88 29.57 -169.99 -5.03 14.85 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.11 7.84 -51.93 -0.41 0.70 16 31 H 0.41 7.48 7.04 -40.82 -0.29 7.19 16 32 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.79 7.98 -51.93 -0.41 0.37 16 35 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 36 H 0.07 0.89 8.13 -51.92 -0.42 0.46 16 37 H 0.11 2.25 7.37 -51.93 -0.38 1.87 16 38 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.40 5.26 8.80 -40.82 -0.36 4.90 16 40 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 41 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 42 H 0.03 0.75 7.38 -51.93 -0.38 0.37 16 43 H 0.04 1.04 7.24 -51.93 -0.38 0.66 16 44 H 0.00 -0.05 6.44 -51.93 -0.33 -0.39 16 45 H 0.25 6.44 8.31 -40.82 -0.34 6.11 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -29.44 355.06 -7.19 -36.63 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.42 Total: 11.31 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 0.15 Total: 13.35 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.43 Total: -58.39 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.19 Total: -23.11 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.44 -7.19 -36.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755314784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.869 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds